Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G010400 Manihot esculenta HOM05D006572 ORTHO05D008181 1.4e-262 909.4 582 100.0
Potri.001G092000 Populus trichocarpa HOM05D006572 ORTHO05D008181 1.3e-167 594.0 578 73.4
Thecc.03G297200 Theobroma cacao HOM05D006572 ORTHO05D008181 2.7e-165 586.3 571 67.1
COL.COLO4_10694 Corchorus olitorius HOM05D006572 ORTHO05D008181 6.3e-159 565.1 594 56.1
TWI60G0540 Tripterygium wilfordii HOM05D006572 ORTHO05D008181 1.0e-156 557.8 572 70.5
Duzib205G1524 Durio zibethinus HOM05D006572 ORTHO05D008181 8.6e-156 554.7 568 67.4
Phvul.002G297700 Phaseolus vulgaris HOM05D006572 ORTHO05D008181 4.9e-151 538.9 570 67.2
Glyma.05G216500 Glycine max HOM05D006572 ORTHO05D008181 3.5e-149 532.7 570 66.1
Sabra01G0068400 Salix brachista HOM05D006572 ORTHO05D008181 4.6e-149 532.3 574 68.1
Ciclev10019283m.g Citrus clementina HOM05D006572 ORTHO05D008181 2.6e-144 516.5 618 61.2
Gorai.003G080600 Gossypium raimondii HOM05D006572 ORTHO05D008181 6.4e-143 511.9 571 65.0
VMungo0251G1431 Vigna mungo HOM05D006572 ORTHO05D008181 2.4e-142 510.0 605 56.4
Duzib068G0791 Durio zibethinus HOM05D006572 ORTHO05D008181 1.2e-141 507.7 570 65.4
Gohir.D03G082800 Gossypium hirsutum HOM05D006572 ORTHO05D008181 4.6e-141 505.8 571 58.7
SHI08936 Sapria himalayana HOM05D006572 ORTHO05D008181 5.0e-140 502.3 614 58.5
Gohir.A02G101400 Gossypium hirsutum HOM05D006572 ORTHO05D008181 5.6e-139 498.8 571 64.1
Lalb_Chr05g0224161 Lupinus albus HOM05D006572 ORTHO05D008181 7.3e-139 498.4 579 59.6
Lj4g0027687 Lotus japonicus HOM05D006572 ORTHO05D008181 2.1e-138 496.9 598 53.7
Rhsim02G0242800 Rhododendron simsii HOM05D006572 ORTHO05D008181 1.4e-137 494.2 574 63.6
Lj8C208G13 Lonicera japonica HOM05D006572 ORTHO05D008181 1.8e-137 493.8 574 63.9
FAN18G4203 Fragaria x ananassa HOM05D006572 ORTHO05D008181 6.8e-137 491.9 603 54.7
FAN18G3438 Fragaria x ananassa HOM05D006572 ORTHO05D008181 1.3e-135 487.6 588 52.0
CSS0002826 Camellia sinensis var. sinensis HOM05D006572 ORTHO05D008181 2.9e-135 486.5 584 62.2
CiPaw.12G083500 Carya illinoinensis HOM05D006572 ORTHO05D008181 4.9e-135 485.7 567 63.8
FAN04G0113 Fragaria x ananassa HOM05D006572 ORTHO05D008181 5.4e-134 482.3 592 46.8
Actinidia04204 Actinidia chinensis HOM05D006572 ORTHO05D008181 6.0e-133 478.8 576 62.8
Medtr8g099415 Medicago truncatula HOM05D006572 ORTHO05D008181 7.8e-133 478.4 573 50.6
FvH4_5g04510 Fragaria vesca HOM05D006572 ORTHO05D008181 8.6e-132 474.9 597 54.3
Eucgr.E00859 Eucalyptus grandis HOM05D006572 ORTHO05D008181 3.3e-131 473.0 570 54.4
Psat7g026640 Pisum sativum HOM05D006572 ORTHO05D008181 2.2e-127 460.3 571 59.0
MD14G1128100 Malus domestica HOM05D006572 ORTHO05D008181 6.4e-127 458.8 577 62.6
Prupe.5G118200 Prunus persica HOM05D006572 ORTHO05D008181 1.4e-126 457.6 573 54.6
EL10Ac5g12911 Beta vulgaris HOM05D006572 ORTHO05D008181 2.4e-126 456.8 598 58.5
MSTRG.25670 Avicennia marina HOM05D006572 ORTHO05D008181 1.7e-124 450.7 577 59.8
FAN08G2039 Fragaria x ananassa HOM05D006572 ORTHO05D008181 5.1e-124 449.1 599 52.9
Migut.A00646 Erythranthe guttata HOM05D006572 ORTHO05D008181 1.5e-120 437.6 577 57.9
GSVIVG01019526001 Vitis vinifera HOM05D006572 ORTHO05D008181 2.9e-119 433.3 573 56.9
RcHm_v2.0_Chr7g0194941 Rosa chinensis HOM05D006572 ORTHO05D008181 1.1e-118 431.4 600 58.5
ECA233G0093 Erigeron canadensis HOM05D006572 ORTHO05D008181 1.4e-118 431.0 576 55.6
AUR62019834 Chenopodium quinoa HOM05D006572 ORTHO05D008181 4.2e-118 429.5 562 61.6
Dinv38835 Davidia involucrata HOM05D006572 ORTHO05D008181 3.0e-116 423.3 478 69.2
HanXRQChr02g0047891 Helianthus annuus HOM05D006572 ORTHO05D008181 2.5e-115 420.2 576 57.8
Haze_08618 Corylus avellana HOM05D006572 ORTHO05D008181 1.3e-114 417.9 527 59.4
Nitab4.5_0005537g0050 Nicotiana tabacum HOM05D006572 ORTHO05D008181 4.8e-114 416.0 595 50.6
PGR042G1206 Punica granatum HOM05D006572 ORTHO05D008181 6.2e-114 415.6 577 59.4
BcaNung04237 Brassica carinata HOM05D006572 ORTHO05D008181 8.1e-114 415.2 581 57.7
C07p53150 Brassica napus HOM05D006572 ORTHO05D008181 8.1e-114 415.2 581 57.7
SalBow1G0494 Salvia bowleyana HOM05D006572 ORTHO05D008181 1.1e-113 414.8 549 54.6
BolC7t45811H Brassica oleracea HOM05D006572 ORTHO05D008181 4.0e-113 412.9 581 57.7
A03p54790 Brassica napus HOM05D006572 ORTHO05D008181 1.5e-112 411.0 582 56.0
BraA03t14546Z Brassica rapa HOM05D006572 ORTHO05D008181 1.5e-112 411.0 582 56.0
Aqoxy5G04214 Aquilegia oxysepala HOM05D006572 ORTHO05D008181 2.6e-112 410.2 587 57.2
arahy.Tifrunner.gnm1.ann1.GR96MW Arachis hypogaea HOM05D006572 ORTHO05D008181 6.4e-111 405.6 569 56.8
Oeu031670.2 Olea europaea HOM05D006572 ORTHO05D008181 6.4e-111 405.6 613 55.0
Nn3g19021 Nelumbo nucifera HOM05D006572 ORTHO05D008181 3.2e-110 403.3 579 58.7
CANSAT21G1897 Cannabis sativa HOM05D006572 ORTHO05D008181 4.6e-109 399.4 577 57.9
Cfa021209 Carpinus fangiana HOM05D006572 ORTHO05D008181 1.0e-108 398.3 490 63.1
TAR636G1103 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.9e-107 394.0 519 62.4
Nitab4.5_0001231g0070 Nicotiana tabacum HOM05D006572 ORTHO05D008181 2.5e-107 393.7 616 51.1
arahy.Tifrunner.gnm1.ann1.Z469MH Arachis hypogaea HOM05D006572 ORTHO05D008181 9.6e-107 391.7 569 55.7
Peaxi162Scf00074g00932 Petunia axillaris HOM05D006572 ORTHO05D008181 2.8e-106 390.2 572 51.0
MBI06_g08449_MAGBIO Magnolia biondii HOM05D006572 ORTHO05D008181 1.5e-104 384.4 519 54.3
Ah.12g052520 Amaranthus hybridus HOM05D006572 ORTHO05D008181 9.9e-104 381.7 574 56.1
DCAR_029886 Daucus carota HOM05D006572 ORTHO05D008181 2.2e-103 380.6 576 48.6
Cc08_g16020 Coffea canephora HOM05D006572 ORTHO05D008181 2.9e-103 380.2 596 54.9
Lsat_1_v5_gn_6_12380 Lactuca sativa HOM05D006572 ORTHO05D008181 2.9e-103 380.2 573 55.3
Hund11391 Selenicereus undatus HOM05D006572 ORTHO05D008181 1.4e-102 377.9 581 53.0
Sopen08g030540 Solanum pennellii HOM05D006572 ORTHO05D008181 3.2e-102 376.7 584 54.5
TPR.G3379 Trifolium pratense HOM05D006572 ORTHO05D008181 5.5e-102 375.9 570 54.9
PGSC0003DMG400012287 Solanum tuberosum HOM05D006572 ORTHO05D008181 1.2e-101 374.8 579 54.6
SGA_v2.0_scaffold96G28963 Striga asiatica HOM05D006572 ORTHO05D008181 1.2e-101 374.8 599 51.3
Dinv37535 Davidia involucrata HOM05D006572 ORTHO05D008181 3.0e-100 370.2 359 65.7
Solyc08g082270.3 Solanum lycopersicum HOM05D006572 ORTHO05D008181 5.1e-100 369.4 584 54.3
vmacro11428 Vaccinium macrocarpon HOM05D006572 ORTHO05D008181 5.1e-100 369.4 596 53.4
CARHR231220 Cardamine hirsuta HOM05D006572 ORTHO05D008181 1.5e-99 367.9 577 56.0
MELO3C016288.2 Cucumis melo HOM05D006572 ORTHO05D008181 3.3e-99 366.7 603 46.9
Sed0014568 Sechium edule HOM05D006572 ORTHO05D008181 7.4e-99 365.5 552 49.5
ClCG07G015010 Citrullus lanatus HOM05D006572 ORTHO05D008181 6.9e-97 359.0 578 51.4
PSO384G1203 Papaver somniferum HOM05D006572 ORTHO05D008181 7.6e-96 355.5 587 51.1
AUR62010836 Chenopodium quinoa HOM05D006572 ORTHO05D008181 2.5e-94 350.5 576 54.7
TAR629G2735 Trochodendron aralioides HOM05D006572 ORTHO05D008181 2.1e-93 347.4 388 59.8
ATR0188G004 Amborella trichopoda HOM05D006572 ORTHO05D008181 6.7e-92 342.4 582 53.3
Ca_17483_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 1.2e-85 321.6 574 42.3
Ca_17508_v3 Cicer arietinum L. HOM05D006572 ORTHO05D008181 1.2e-85 321.6 574 42.3
Carub.0007s1729 Capsella rubella HOM05D006572 ORTHO05D008181 2.5e-83 313.9 574 51.9
Atru.BG.201.p Acer truncatum HOM05D006572 ORTHO05D008181 1.4e-81 308.1 366 63.4
CAN.G532.118 Capsicum annuum HOM05D006572 ORTHO05D008181 3.1e-81 307.0 501 51.1
Thhalv10024706m.g Eutrema salsugineum HOM05D006572 ORTHO05D008181 3.1e-81 307.0 571 51.5
AL7G29520 Arabidopsis lyrata HOM05D006572 ORTHO05D008181 1.5e-80 304.7 573 51.5
Sp7g21790 Schrenkiella parvula HOM05D006572 ORTHO05D008181 5.0e-79 299.7 578 50.2
Os05g0212200 Oryza sativa ssp. japonica HOM05D006572 ORTHO05D008181 1.4e-78 298.1 582 44.3
THA.LOC104815028 Tarenaya hassleriana HOM05D006572 ORTHO05D008181 1.4e-78 298.1 577 45.9
BcaNung04088 Brassica carinata HOM05D006572 ORTHO05D008181 3.2e-78 297.0 522 54.8
Sc22g0005020 Simmondsia chinensis HOM05D006572 ORTHO05D008181 6.1e-77 292.7 475 59.4
AT4G23840 Arabidopsis thaliana HOM05D006572 ORTHO05D008181 6.7e-76 289.3 571 49.0
HPP92_024023 Vanilla planifolia HOM05D006572 ORTHO05D008181 2.6e-72 277.3 569 50.6
CsaV3_4G006550 Cucumis sativus L. HOM05D006572 ORTHO05D008181 1.9e-70 271.2 499 44.9
SEGI_00989 Sequoiadendron giganteum HOM05D006572 ORTHO05D008181 8.8e-68 262.3 587 47.5
Aa31LG6G7050 Aethionema arabicum HOM05D006572 ORTHO05D008181 9.7e-67 258.8 585 48.2
Zm00001eb350650 Zea mays HOM05D006572 ORTHO05D008181 9.4e-62 242.3 572 39.9
CDE03G0094 Ceratophyllum demersum HOM05D006572 ORTHO05D008181 2.1e-61 241.1 542 49.4
Pp3c22_12260 Physcomitrium patens HOM05D006572 ORTHO05D008181 2.0e-59 234.6 509 30.1
SMO232G0056 Selaginella moellendorffii HOM05D006572 ORTHO05D008181 5.0e-55 219.9 519 42.6
FAN13G1782 Fragaria x ananassa HOM05D006572 ORTHO05D008181 4.9e-42 176.8 306 37.3
Dinv37534 Davidia involucrata HOM05D006572 ORTHO05D008181 1.7e-31 141.7 210 51.9
unitig_748.g8130 Utricularia gibba HOM05D006572 ORTHO05D008181 1.2e-29 135.6 438 47.7
TAR376G0673 Trochodendron aralioides HOM05D006572 ORTHO05D008181 6.4e-26 123.2 150 50.0
unitig_748.g8129 Utricularia gibba HOM05D006572 ORTHO05D008181 6.6e-23 113.2 158 41.8
TAR629G3536 Trochodendron aralioides HOM05D006572 ORTHO05D008181 1.1e-17 95.9 205 53.2
QL12p023582 Quercus lobata HOM05D006572 ORTHO05D008181 3.4e-11 74.3 48 77.1
QL93p2003_0058 Quercus lobata HOM05D006572 ORTHO05D008181 9.9e-11 72.8 48 75.0
CBR_g39933 Chara braunii HOM05D006572 ORTHO05D008181 2.2e-10 71.6 456 34.4
Hma1.2p1_0450F.1_g155520 Hydrangea macrophylla HOM05D006572 ORTHO05D008181 1.6e-08 65.5 50 64.0
Hma1.2p1_1530F.1_g289190 Hydrangea macrophylla HOM05D006572 ORTHO05D008181 3.5e-08 64.3 50 64.0
Hma1.2p1_0082F.1_g042550 Hydrangea macrophylla HOM05D006572 ORTHO05D008181 4.6e-08 63.9 50 66.0
HanXRQChr09g0272151 Helianthus annuus HOM05D006572 ORTHO05D008181 3.0e-07 61.2 51 58.8
Actinidia27580 Actinidia chinensis HOM05D006572 ORTHO05D008181 3.9e-07 60.8 102 43.1
COL.COLO4_23949 Corchorus olitorius HOM05D000311 ORTHO05D000183 3.3e-06 57.8 134 32.1
Cpa.g.sc79.39 Carica papaya HOM05D006572 ORTHO05D008181 4.3e-06 57.4 62 53.2
Eucgr.E04289 Eucalyptus grandis HOM05D000311 ORTHO05D000183 7.3e-06 56.6 159 28.3


User provided reference genes

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