Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G010000 Manihot esculenta HOM05D007590 ORTHO05D007875 2.0e-53 212.2 111 100.0
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 2.3e-41 172.2 115 83.5
Potri.001G091500 Populus trichocarpa HOM05D007590 ORTHO05D007875 1.9e-27 125.9 109 68.8
Sabra01G0067900 Salix brachista HOM05D007590 ORTHO05D007875 2.8e-23 112.1 106 58.5
Potri.003G140100 Populus trichocarpa HOM05D007590 ORTHO05D007875 4.8e-23 111.3 109 62.4
Sabra03G0101100 Salix brachista HOM05D007590 ORTHO05D007875 6.9e-22 107.5 109 58.7
Manes.01G049200 Manihot esculenta HOM05D007590 ORTHO05D007875 1.7e-20 102.8 105 61.9
Cfa012011 Carpinus fangiana HOM05D007590 ORTHO05D007875 1.9e-19 99.4 117 53.0
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 1.6e-18 96.3 109 56.0
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 1.6e-18 96.3 112 50.9
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 2.1e-18 95.9 110 54.5
Prupe.5G120200 Prunus persica HOM05D007590 ORTHO05D007875 5.1e-17 91.3 110 48.2
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 8.7e-17 90.5 116 49.1
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 8.7e-17 90.5 108 51.9
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 8.7e-17 90.5 108 51.9
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 5.7e-16 87.8 109 54.1
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 1.3e-15 86.7 109 47.7
Actinidia22161 Actinidia chinensis HOM05D007590 ORTHO05D007875 2.2e-15 85.9 103 48.5
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 2.2e-15 85.9 110 51.8
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 2.8e-15 85.5 111 50.5
Thecc.03G298200 Theobroma cacao HOM05D007590 ORTHO05D007875 8.2e-15 84.0 112 50.9
Nn3g19015 Nelumbo nucifera HOM05D007590 ORTHO05D007875 1.8e-14 82.8 109 51.4
Peaxi162Scf00102g00178 Petunia axillaris HOM05D007590 ORTHO05D007875 1.8e-14 82.8 108 50.0
TAR629G2201 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.8e-14 82.8 76 60.5
CDE10G0927 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 5.3e-14 81.3 103 45.6
Lalb_Chr05g0211541 Lupinus albus HOM05D007590 ORTHO05D007875 5.3e-14 81.3 111 45.0
MSTRG.11924 Avicennia marina HOM05D007590 ORTHO05D007875 1.5e-13 79.7 103 49.5
LjContig00312_ERROPOS870357g0000452 Lotus japonicus HOM05D007590 ORTHO05D007875 2.0e-13 79.3 113 46.0
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 2.6e-13 79.0 106 51.9
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 2.6e-13 79.0 113 45.1
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 3.4e-13 78.6 111 48.6
CDE10G0175 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 3.4e-13 78.6 103 44.7
Duzib205G1174 Durio zibethinus HOM05D007590 ORTHO05D007875 3.4e-13 78.6 111 45.0
FAN13G0413 Fragaria x ananassa HOM05D007590 ORTHO05D007875 3.4e-13 78.6 111 48.6
DCAR_006487 Daucus carota HOM05D007590 ORTHO05D007875 4.5e-13 78.2 113 46.9
Duzib084G0874 Durio zibethinus HOM05D007590 ORTHO05D007875 4.5e-13 78.2 113 47.8
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 4.5e-13 78.2 111 47.7
PGSC0003DMG400005790 Solanum tuberosum HOM05D007590 ORTHO05D007875 4.5e-13 78.2 112 46.4
SalBow1G4032 Salvia bowleyana HOM05D007590 ORTHO05D007875 5.9e-13 77.8 106 44.3
SalBow1G6340 Salvia bowleyana HOM05D007590 ORTHO05D007875 5.9e-13 77.8 106 44.3
Nitab4.5_0002782g0040 Nicotiana tabacum HOM05D007590 ORTHO05D007875 7.6e-13 77.4 114 49.1
Duzib068G0682 Durio zibethinus HOM05D007590 ORTHO05D007875 1.0e-12 77.0 112 47.3
PGSC0003DMG400012280 Solanum tuberosum HOM05D007590 ORTHO05D007875 1.0e-12 77.0 108 47.2
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.0e-12 77.0 108 50.9
Medtr5g009260 Medicago truncatula HOM05D007590 ORTHO05D007875 1.3e-12 76.6 107 43.9
Duzib068G0902 Durio zibethinus HOM05D007590 ORTHO05D007875 1.7e-12 76.3 103 50.5
Peaxi162Scf00074g00097 Petunia axillaris HOM05D007590 ORTHO05D007875 2.9e-12 75.5 98 52.0
COL.COLO4_10703 Corchorus olitorius HOM05D007590 ORTHO05D007875 5.0e-12 74.7 75 58.7
Sopen08g004200 Solanum pennellii HOM05D007590 ORTHO05D007875 5.0e-12 74.7 112 44.6
Lsat_1_v5_gn_6_83961 Lactuca sativa HOM05D007590 ORTHO05D007875 6.5e-12 74.3 104 47.1
MSTRG.25673 Avicennia marina HOM05D007590 ORTHO05D007875 8.5e-12 73.9 104 46.2
Cpa.g.sc79.34 Carica papaya HOM05D007590 ORTHO05D007875 8.5e-12 73.9 111 41.4
Glyma.01G225600 Glycine max HOM05D007590 ORTHO05D007875 8.5e-12 73.9 111 44.1
Phvul.002G164500 Phaseolus vulgaris HOM05D007590 ORTHO05D007875 8.5e-12 73.9 107 42.1
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 8.5e-12 73.9 107 45.8
TPR.G25602 Trifolium pratense HOM05D007590 ORTHO05D007875 8.5e-12 73.9 112 45.5
Nitab4.5_0001231g0140 Nicotiana tabacum HOM05D007590 ORTHO05D007875 1.1e-11 73.6 101 48.5
TWI60G0225 Tripterygium wilfordii HOM05D007590 ORTHO05D007875 1.1e-11 73.6 115 47.8
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 1.4e-11 73.2 107 44.9
CiPaw.12G082700 Carya illinoinensis HOM05D007590 ORTHO05D007875 1.9e-11 72.8 111 44.1
FAN04G0970 Fragaria x ananassa HOM05D007590 ORTHO05D007875 1.9e-11 72.8 111 46.8
Ciclev10022592m.g Citrus clementina HOM05D007590 ORTHO05D007875 2.5e-11 72.4 104 46.2
Sed0026863 Sechium edule HOM05D007590 ORTHO05D007875 3.2e-11 72.0 117 41.0
Ca_24513_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 4.2e-11 71.6 70 52.9
Ca_29733_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 4.2e-11 71.6 70 52.9
HanXRQChr03g0083501 Helianthus annuus HOM05D007590 ORTHO05D007875 9.4e-11 70.5 104 40.4
Lsat_1_v5_gn_3_10720 Lactuca sativa HOM05D007590 ORTHO05D007875 9.4e-11 70.5 105 41.9
FAN08G0943 Fragaria x ananassa HOM05D007590 ORTHO05D007875 2.7e-10 68.9 111 44.1
EL10Ac5g12916 Beta vulgaris HOM05D007590 ORTHO05D007875 4.6e-10 68.2 74 51.4
Gohir.D03G083700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 4.6e-10 68.2 111 45.0
CANSAT21G0370 Cannabis sativa HOM05D007590 ORTHO05D007875 6.1e-10 67.8 127 45.7
AUR62019841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 6.1e-10 67.8 113 42.5
Oeu063521.1 Olea europaea HOM05D007590 ORTHO05D007875 1.0e-09 67.0 103 46.6
SGA_v2.0_scaffold305G47972 Striga asiatica HOM05D007590 ORTHO05D007875 1.4e-09 66.6 104 45.2
CsaV3_4G006590 Cucumis sativus L. HOM05D007590 ORTHO05D007875 2.3e-09 65.9 111 39.6
Glyma.11G017400 Glycine max HOM05D007590 ORTHO05D007875 5.1e-09 64.7 116 39.7
Sed0003477 Sechium edule HOM05D007590 ORTHO05D007875 8.8e-09 63.9 62 51.6
MELO3C016294.2 Cucumis melo HOM05D007590 ORTHO05D007875 1.1e-08 63.5 71 52.1
Gohir.A02G100100 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.5e-08 63.2 109 45.9
Migut.A00642 Erythranthe guttata HOM05D007590 ORTHO05D007875 1.9e-08 62.8 60 55.0
Gohir.D12G237700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.9e-08 62.8 105 41.0
Gohir.D12G237966 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.9e-08 62.8 105 41.0
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 3.3e-08 62.0 113 38.1
Gorai.003G079000 Gossypium raimondii HOM05D007590 ORTHO05D007875 4.3e-08 61.6 103 43.7
Gorai.008G254500 Gossypium raimondii HOM05D007590 ORTHO05D007875 4.3e-08 61.6 106 41.5
ClCG07G011620 Citrullus lanatus HOM05D007590 ORTHO05D007875 9.7e-08 60.5 64 51.6
Gohir.A12G236500 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.3e-07 60.1 105 41.0
Ah.12g052560 Amaranthus hybridus HOM05D007590 ORTHO05D007875 2.2e-07 59.3 118 39.0
ATR0602G105 Amborella trichopoda HOM05D007590 ORTHO05D007875 2.8e-07 58.9 128 37.5
Eucgr.D01739 Eucalyptus grandis HOM05D007590 ORTHO05D007875 6.3e-07 57.8 136 37.5
MBI06_g08455_MAGBIO Magnolia biondii HOM05D007590 ORTHO05D007875 1.1e-06 57.0 63 47.6
Gohir.A02G100200 Gossypium hirsutum HOM05D007590 ORTHO05D007875 9.1e-06 53.9 102 38.2


User provided reference genes

Program Settings