Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 6.5e-38 160.2 80 100.0
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.3e-25 119.4 80 77.5
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.3e-25 119.4 80 77.5
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 1.7e-25 119.0 80 77.5
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 1.7e-25 119.0 80 75.0
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 8.2e-25 116.7 80 75.0
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.4e-24 115.9 80 76.2
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 1.4e-24 115.9 80 73.8
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 2.4e-24 115.2 80 73.8
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 5.3e-24 114.0 79 75.9
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.2e-23 112.8 81 75.3
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 2.0e-23 112.1 80 72.5
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 2.6e-23 111.7 77 74.0
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 5.9e-23 110.5 75 76.0
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 5.9e-23 110.5 82 72.0
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 7.7e-23 110.2 81 74.1
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.7e-22 109.0 82 74.4
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.7e-22 109.0 75 76.0
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 6.5e-22 107.1 81 72.8
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 6.5e-22 107.1 82 72.0
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 8.5e-22 106.7 85 67.1
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 2.5e-21 105.1 77 72.7
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 4.2e-21 104.4 81 69.1
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 7.2e-21 103.6 80 67.5
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 9.4e-21 103.2 80 72.5
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 1.2e-20 102.8 75 70.7
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.6e-20 102.4 82 68.3
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 2.1e-20 102.1 82 70.7
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 4.7e-20 100.9 75 73.3
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 4.7e-20 100.9 75 73.3
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 4.7e-20 100.9 82 70.7
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 4.7e-20 100.9 85 68.2
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 6.1e-20 100.5 80 67.5
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.9e-20 100.1 80 67.5
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 7.9e-20 100.1 85 62.4
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 7.9e-20 100.1 78 65.4
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 1.0e-19 99.8 82 70.7
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 1.0e-19 99.8 82 67.1
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 1.4e-19 99.4 85 63.5
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 1.8e-19 99.0 76 68.4
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 3.9e-19 97.8 75 72.0
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 5.1e-19 97.4 80 66.2
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 6.7e-19 97.1 81 65.4
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 6.7e-19 97.1 79 68.4
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 6.7e-19 97.1 80 65.0
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 6.7e-19 97.1 82 63.4
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 1.1e-18 96.3 76 65.8
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 1.1e-18 96.3 80 65.0
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.1e-18 96.3 80 65.0
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 1.5e-18 95.9 77 67.5
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.5e-18 95.9 76 68.4
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 2.0e-18 95.5 82 67.1
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 2.0e-18 95.5 80 63.8
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 2.0e-18 95.5 80 63.8
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 2.0e-18 95.5 83 62.7
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 2.0e-18 95.5 83 62.7
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 5.7e-18 94.0 80 62.5
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 3.7e-17 91.3 86 64.0
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 6.3e-17 90.5 80 61.2
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 6.3e-17 90.5 71 64.8
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 6.3e-17 90.5 77 66.2
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 8.2e-17 90.1 81 61.7
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 8.2e-17 90.1 80 60.0
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 1.1e-16 89.7 80 60.0
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.1e-16 89.7 77 63.6
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.1e-16 89.7 77 59.7
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.4e-16 89.4 91 61.5
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 1.4e-16 89.4 77 63.6
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 1.8e-16 89.0 86 58.1
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 2.4e-16 88.6 81 61.7
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 2.4e-16 88.6 83 56.6
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 3.1e-16 88.2 85 61.2
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 4.1e-16 87.8 80 61.2
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 4.1e-16 87.8 77 63.6
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 5.3e-16 87.4 93 55.9
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 7.0e-16 87.0 77 62.3
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 9.1e-16 86.7 75 61.3
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.6e-15 85.9 75 62.7
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 2.0e-15 85.5 75 58.7
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 2.0e-15 85.5 75 60.0
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 2.0e-15 85.5 87 56.3
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 2.0e-15 85.5 78 66.7
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 2.0e-15 85.5 78 66.7
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 3.5e-15 84.7 80 61.2
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 3.5e-15 84.7 80 61.2
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 3.5e-15 84.7 84 57.1
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 4.5e-15 84.3 81 63.0
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 5.9e-15 84.0 85 60.0
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.9e-15 84.0 74 62.2
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.0e-14 83.2 77 57.1
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 1.0e-14 83.2 61 73.8
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 1.0e-14 83.2 85 60.0
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 1.7e-14 82.4 78 65.4
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 1.7e-14 82.4 89 56.2
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.2e-14 82.0 91 56.0
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 2.2e-14 82.0 79 60.8
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 2.2e-14 82.0 80 60.0
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.8e-14 81.3 86 60.5
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 3.8e-14 81.3 83 61.4
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 5.0e-14 80.9 86 60.5
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 5.0e-14 80.9 91 56.0
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 1.1e-13 79.7 75 61.3
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 1.5e-13 79.3 79 58.2
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 1.5e-13 79.3 69 60.9
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 1.5e-13 79.3 78 57.7
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 1.5e-13 79.3 69 60.9
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 1.5e-13 79.3 82 57.3
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 1.9e-13 79.0 79 58.2
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.9e-13 79.0 82 58.5
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.9e-13 79.0 75 61.3
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 3.2e-13 78.2 78 59.0
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 4.2e-13 77.8 82 57.3
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 5.5e-13 77.4 80 56.2
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 5.5e-13 77.4 82 54.9
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.5e-13 77.4 91 54.9
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 5.5e-13 77.4 80 60.0
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 5.5e-13 77.4 83 61.4
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 5.5e-13 77.4 81 56.8
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 7.2e-13 77.0 76 56.6
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 7.2e-13 77.0 82 57.3
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.2e-13 77.0 82 57.3
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 9.4e-13 76.6 77 55.8
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.2e-12 76.3 85 55.3
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 1.2e-12 76.3 79 54.4
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 1.2e-12 76.3 82 56.1
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.2e-12 76.3 75 58.7
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 3.6e-12 74.7 83 54.2
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 3.6e-12 74.7 86 52.3
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 4.7e-12 74.3 79 54.4
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 4.7e-12 74.3 77 57.1
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 4.7e-12 74.3 89 51.7
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 4.7e-12 74.3 78 57.7
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 6.1e-12 73.9 82 53.7
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 8.0e-12 73.6 77 58.4
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 8.0e-12 73.6 80 56.2
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 8.0e-12 73.6 78 53.8
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.0e-11 73.2 93 52.7
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 1.0e-11 73.2 82 54.9
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.4e-11 72.8 82 52.4
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.3e-11 72.0 84 56.0
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 4.0e-11 71.2 79 53.2
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 4.0e-11 71.2 79 51.9
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 4.0e-11 71.2 84 46.4
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 5.2e-11 70.9 99 52.5
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 6.7e-11 70.5 79 54.4
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.1e-10 69.7 78 59.0
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 2.0e-10 68.9 61 68.9
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 2.0e-10 68.9 78 52.6
FAN13G0743 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.3e-10 68.2 61 60.7
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 4.4e-10 67.8 78 52.6
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 7.5e-10 67.0 77 51.9
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 1.3e-09 66.2 74 54.1
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 3.7e-09 64.7 79 57.0
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.7e-09 64.7 74 51.4
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 4.8e-09 64.3 84 47.6
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 8.2e-09 63.5 96 47.9
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.1e-08 63.2 77 51.9
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.8e-08 62.4 74 52.7
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 3.1e-08 61.6 78 51.3
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 5.3e-08 60.8 79 48.1
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 7.0e-08 60.5 78 52.6
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 9.1e-08 60.1 80 45.0
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 2.0e-07 58.9 82 48.8
Aqoxy7G00101 Aquilegia oxysepala HOM05D002868 ORTHO05D023304 3.5e-07 58.2 58 55.2
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 3.5e-07 58.2 77 46.8
Zm00001eb277870 Zea mays HOM05D004051 ORTHO05D004480 3.5e-07 58.2 96 40.6
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 5.9e-07 57.4 80 48.8


User provided reference genes

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