Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 1.3e-98 363.2 207 100.0
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 8.8e-63 244.2 204 64.7
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 1.2e-62 243.8 204 65.7
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 7.5e-62 241.1 204 65.2
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 4.2e-57 225.3 207 66.2
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 2.6e-54 216.1 208 61.1
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 4.8e-53 211.8 208 63.5
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 4.1e-52 208.8 208 60.1
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 1.6e-51 206.8 209 60.3
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 2.0e-51 206.5 207 58.9
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 2.7e-51 206.1 207 58.9
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 3.5e-51 205.7 209 62.2
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 4.5e-51 205.3 208 62.0
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 5.9e-51 204.9 208 58.2
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 7.7e-51 204.5 207 59.9
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.0e-50 204.1 208 58.7
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.0e-50 204.1 208 63.5
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 8.6e-50 201.1 207 57.5
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 1.9e-49 199.9 208 59.1
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 2.5e-49 199.5 207 58.9
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 6.8e-47 191.4 209 56.5
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 2.0e-46 189.9 208 55.3
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 3.4e-46 189.1 207 57.5
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 7.5e-46 188.0 207 54.1
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 2.2e-45 186.4 204 54.4
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 6.3e-45 184.9 208 55.3
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 8.3e-45 184.5 208 56.7
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 1.4e-44 183.7 209 53.6
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.8e-44 183.3 208 56.2
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 1.8e-44 183.3 207 53.6
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.8e-44 183.3 207 54.6
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 4.1e-44 182.2 292 42.8
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 7.0e-44 181.4 207 58.0
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 9.2e-44 181.0 207 56.5
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.0e-43 179.9 208 55.3
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 4.5e-43 178.7 207 55.6
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 4.5e-43 178.7 207 53.1
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 7.8e-43 177.9 209 52.6
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 1.3e-42 177.2 246 46.7
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 5.0e-42 175.3 207 57.5
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.1e-41 174.1 234 47.9
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 1.1e-41 174.1 207 51.7
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.5e-41 173.7 209 55.5
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 5.6e-41 171.8 188 61.7
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 5.6e-41 171.8 188 61.7
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 5.6e-41 171.8 209 55.0
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.2e-40 170.6 210 52.4
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.2e-40 170.6 210 52.4
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.2e-40 170.6 234 47.0
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 1.6e-40 170.2 213 48.8
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 1.6e-40 170.2 226 49.6
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 1.6e-40 170.2 211 57.3
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 1.0e-39 167.5 306 41.5
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 1.4e-39 167.2 229 59.8
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 1.8e-39 166.8 206 50.0
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.0e-39 166.0 207 52.7
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.0e-39 166.0 207 52.7
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 6.8e-39 164.9 206 51.0
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 8.9e-39 164.5 191 57.6
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 1.2e-38 164.1 205 47.3
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 5.8e-38 161.8 213 50.7
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 2.2e-37 159.8 207 51.7
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 6.4e-37 158.3 186 55.4
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 6.4e-37 158.3 254 42.1
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 8.3e-37 157.9 210 49.5
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.9e-36 156.8 219 49.3
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 1.9e-36 156.8 209 45.9
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 3.2e-36 156.0 222 48.6
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 1.6e-35 153.7 213 53.5
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 2.7e-35 152.9 197 50.3
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 3.9e-34 149.1 214 50.0
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 5.0e-34 148.7 192 55.7
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 6.6e-34 148.3 219 54.8
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 6.6e-34 148.3 211 47.4
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 1.1e-33 147.5 206 44.7
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 2.5e-33 146.4 223 54.3
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.5e-33 146.4 268 39.6
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.5e-33 146.4 268 39.6
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 1.6e-32 143.7 208 44.7
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.6e-32 143.7 196 48.5
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 1.6e-32 143.7 217 47.0
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 3.6e-32 142.5 220 48.2
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 1.8e-31 140.2 267 40.1
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 3.1e-31 139.4 194 47.4
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 8.9e-31 137.9 217 47.0
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.5e-30 137.1 119 63.9
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.5e-30 137.1 119 63.9
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.5e-30 137.1 219 46.1
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 5.8e-30 135.2 219 45.2
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 1.3e-29 134.0 202 45.0
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 2.2e-29 133.3 133 54.1
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 1.4e-28 130.6 119 60.5
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 1.9e-28 130.2 119 61.3
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 2.4e-28 129.8 112 62.5
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 3.2e-28 129.4 211 43.6
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 4.1e-28 129.0 119 59.7
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 3.5e-27 125.9 114 60.5
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 7.8e-27 124.8 208 45.7
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 7.8e-27 124.8 123 58.5
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 1.0e-26 124.4 256 38.3
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 1.0e-26 124.4 215 45.6
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 1.7e-26 123.6 211 44.5
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 3.9e-26 122.5 115 60.0
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 5.1e-26 122.1 119 59.7
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 8.6e-26 121.3 119 58.8
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 7.3e-25 118.2 174 46.0
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 4.7e-24 115.5 125 59.2
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 1.4e-23 114.0 238 41.6
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 1.8e-23 113.6 119 53.8
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.8e-23 113.6 205 41.0
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 2.0e-22 110.2 206 42.7
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 4.4e-22 109.0 308 32.5
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 1.3e-21 107.5 232 37.9
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.3e-21 107.5 178 42.7
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.7e-21 107.1 160 43.1
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 1.1e-20 104.4 97 59.8
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 5.4e-20 102.1 206 41.3
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 5.4e-20 102.1 210 41.4
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 1.6e-19 100.5 203 40.4
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 1.0e-18 97.8 104 54.8
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 1.7e-18 97.1 202 39.6
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 3.9e-18 95.9 209 35.9
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 5.1e-18 95.5 135 46.7
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 5.6e-17 92.0 123 50.4
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 5.6e-17 92.0 178 39.9
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 2.8e-16 89.7 106 50.9
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 1.2e-14 84.3 104 51.0
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 2.0e-14 83.6 109 47.7
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 4.4e-14 82.4 68 63.2
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 4.4e-14 82.4 121 45.5
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 4.4e-14 82.4 104 50.0
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 5.8e-14 82.0 73 68.5
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 4.9e-13 79.0 178 37.6
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.1e-12 77.8 107 43.0
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.1e-12 77.8 107 43.0
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.1e-12 77.8 107 43.0
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 1.3e-10 70.9 120 44.2
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.9e-10 69.3 68 57.4
Oeu029936.1 Olea europaea HOM05D005115 ORTHO05D005703 8.7e-10 68.2 50 70.0
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 5.6e-09 65.5 154 33.8
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 1.4e-07 60.8 57 50.9
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 4.0e-07 59.3 57 49.1
PSO801G0261 Papaver somniferum HOM05D024038 ORTHO05D305112 4.0e-07 59.3 165 31.5
BcaB01g01572 Brassica carinata HOM05D005115 ORTHO05D005703 9.0e-07 58.2 62 53.2
Lalb_Chr05g0211571 Lupinus albus HOM05D005115 ORTHO05D005703 1.2e-06 57.8 55 61.8
PSO339G5274 Papaver somniferum HOM05D024038 ORTHO05D303746 4.4e-06 55.8 158 31.0


User provided reference genes

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