Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 1.0e-38 162.9 84 100.0
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 6.4e-28 127.1 88 79.5
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.7e-20 102.4 86 72.1
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 3.2e-19 98.2 85 69.4
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 3.0e-17 91.7 66 68.2
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.9e-17 91.3 66 68.2
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 6.6e-17 90.5 84 63.1
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.5e-16 89.4 66 66.7
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 3.3e-16 88.2 84 59.5
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 5.6e-16 87.4 68 64.7
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 1.2e-15 86.3 68 64.7
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.4e-14 82.8 84 60.7
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 1.8e-14 82.4 75 60.0
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.8e-14 82.4 66 60.6
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 3.1e-14 81.6 76 60.5
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 4.0e-14 81.3 90 56.7
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 5.2e-14 80.9 89 57.3
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.5e-13 79.3 84 59.5
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 2.6e-13 78.6 90 54.4
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 3.4e-13 78.2 82 52.4
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 2.2e-12 75.5 95 51.6
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 2.9e-12 75.1 79 55.7
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 3.8e-12 74.7 90 54.4
Potri.003G143800 Populus trichocarpa HOM05D003086 ORTHO05D003347 4.9e-12 74.3 63 68.3
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 8.4e-12 73.6 78 56.4
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 1.1e-11 73.2 76 59.2
SHI06941 Sapria himalayana HOM05D003472 ORTHO05D004200 1.9e-11 72.4 86 52.3
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 3.2e-11 71.6 66 57.6
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 3.2e-11 71.6 78 52.6
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 9.2e-11 70.1 78 44.9
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 9.2e-11 70.1 78 44.9
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 9.2e-11 70.1 78 44.9
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 9.2e-11 70.1 78 44.9
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 9.2e-11 70.1 78 44.9
Sed0015662 Sechium edule HOM05D003086 ORTHO05D003347 1.2e-10 69.7 84 52.4
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 3.5e-10 68.2 77 51.9
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 4.6e-10 67.8 92 46.7
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 7.8e-10 67.0 78 43.6
Lalb_Chr05g0223911 Lupinus albus HOM05D003086 ORTHO05D003347 7.8e-10 67.0 100 45.0
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 7.8e-10 67.0 87 52.9
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 1.0e-09 66.6 84 51.2
MELO3C005750.2 Cucumis melo HOM05D003086 ORTHO05D003347 1.3e-09 66.2 87 52.9
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 1.3e-09 66.2 78 50.0
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 1.3e-09 66.2 61 50.8
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.3e-09 66.2 88 47.7
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 1.7e-09 65.9 76 50.0
BcaNung05697 Brassica carinata HOM05D003086 ORTHO05D003347 1.7e-09 65.9 70 51.4
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 1.7e-09 65.9 75 50.7
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 3.0e-09 65.1 76 48.7
ClCG01G001890 Citrullus lanatus HOM05D003086 ORTHO05D003347 3.0e-09 65.1 92 51.1
Duzib084G0307 Durio zibethinus HOM05D003086 ORTHO05D003347 3.0e-09 65.1 41 73.2
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 3.9e-09 64.7 76 50.0
BcaNung06471 Brassica carinata HOM05D003086 ORTHO05D003347 5.1e-09 64.3 74 51.4
C07p53320 Brassica napus HOM05D003086 ORTHO05D003347 5.1e-09 64.3 74 51.4
BolC7t45826H Brassica oleracea HOM05D003086 ORTHO05D003347 5.1e-09 64.3 74 51.4
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 5.1e-09 64.3 75 46.7
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 6.6e-09 63.9 66 53.0
CSS0003230 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 6.6e-09 63.9 70 52.9
CSS0024306 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 6.6e-09 63.9 70 52.9
CARHR046350 Cardamine hirsuta HOM05D003086 ORTHO05D003347 8.7e-09 63.5 73 50.7
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 8.7e-09 63.5 72 48.6
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.1e-08 63.2 73 49.3
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 1.1e-08 63.2 76 48.7
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 1.1e-08 63.2 72 55.6
CiPaw.11G115700 Carya illinoinensis HOM05D003086 ORTHO05D003347 2.5e-08 62.0 55 63.6
CsaV3_5G002030 Cucumis sativus L. HOM05D003086 ORTHO05D003347 2.5e-08 62.0 54 64.8
Lj4g0018385 Lotus japonicus HOM05D003086 ORTHO05D003347 2.5e-08 62.0 75 46.7
Psat7g022720 Pisum sativum HOM05D003086 ORTHO05D003347 2.5e-08 62.0 45 64.4
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 3.3e-08 61.6 61 54.1
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 3.3e-08 61.6 55 58.2
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 4.3e-08 61.2 77 48.1
Thhalv10015091m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 4.3e-08 61.2 57 54.4
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 4.3e-08 61.2 69 49.3
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 5.6e-08 60.8 76 47.4
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 7.3e-08 60.5 70 48.6
TPR.G3409 Trifolium pratense HOM05D003086 ORTHO05D003347 7.3e-08 60.5 44 70.5
Glyma.08G026000 Glycine max HOM05D003086 ORTHO05D003347 9.6e-08 60.1 95 41.1
Phvul.002G328908 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 9.6e-08 60.1 82 45.1
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 9.6e-08 60.1 58 51.7
Glyma.05G219700 Glycine max HOM05D003086 ORTHO05D003347 1.2e-07 59.7 89 41.6
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 1.2e-07 59.7 67 44.8
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 1.6e-07 59.3 62 48.4
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 1.6e-07 59.3 57 49.1
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 2.1e-07 58.9 52 57.7
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 2.8e-07 58.5 68 47.1
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 2.8e-07 58.5 58 55.2
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 3.6e-07 58.2 83 44.6
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 3.6e-07 58.2 61 50.8
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 4.7e-07 57.8 65 46.2
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 4.7e-07 57.8 60 53.3
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 4.7e-07 57.8 72 44.4
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 4.7e-07 57.8 78 39.7
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 4.7e-07 57.8 62 53.2
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 6.2e-07 57.4 70 45.7
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 6.2e-07 57.4 56 53.6
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 6.2e-07 57.4 68 48.5
Medtr8g099965 Medicago truncatula HOM05D003086 ORTHO05D003347 6.2e-07 57.4 45 60.0
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 6.2e-07 57.4 55 54.5
Carub.0007s1706 Capsella rubella HOM05D003086 ORTHO05D003347 8.1e-07 57.0 69 49.3
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 8.1e-07 57.0 63 47.6
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 8.1e-07 57.0 80 46.2
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 1.1e-06 56.6 67 52.2
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 1.1e-06 56.6 62 45.2
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 1.1e-06 56.6 65 46.2
CANSAT21G1677 Cannabis sativa HOM05D003086 ORTHO05D003347 1.4e-06 56.2 83 45.8
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.4e-06 56.2 60 48.3
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.4e-06 56.2 60 48.3
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 1.4e-06 56.2 84 42.9
AT4G24026 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 1.8e-06 55.8 78 41.0
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 1.8e-06 55.8 76 40.8
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 1.8e-06 55.8 68 44.1
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 1.8e-06 55.8 60 48.3
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.4e-06 55.5 57 49.1
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 2.4e-06 55.5 58 51.7
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 2.4e-06 55.5 57 49.1
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 3.1e-06 55.1 73 45.2
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 3.1e-06 55.1 78 46.2
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 3.1e-06 55.1 76 46.1
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 4.0e-06 54.7 57 49.1
Lalb_Chr04g0254361 Lupinus albus HOM05D003086 ORTHO05D003347 4.0e-06 54.7 51 54.9
Lalb_Chr09g0332101 Lupinus albus HOM05D003086 ORTHO05D003347 4.0e-06 54.7 56 53.6
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 4.0e-06 54.7 91 37.4
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.2e-06 54.3 52 53.8
Ah.13g070480 Amaranthus hybridus HOM05D003086 ORTHO05D003347 6.9e-06 53.9 82 42.7
Aqoxy7G00049 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 6.9e-06 53.9 79 41.8
AL7G29250 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 6.9e-06 53.9 79 41.8
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 6.9e-06 53.9 90 41.1
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 9.0e-06 53.5 88 38.6
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 9.0e-06 53.5 87 39.1
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 9.0e-06 53.5 57 49.1
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 9.0e-06 53.5 50 56.0
Sed0027058 Sechium edule HOM05D003086 ORTHO05D003347 9.0e-06 53.5 55 58.2


User provided reference genes

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