Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 3.3e-231 804.7 410 100.0
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 1.1e-165 587.0 414 72.9
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 1.1e-165 587.0 415 73.0
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 5.4e-165 584.7 409 74.3
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 1.6e-164 583.2 407 73.5
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.3e-163 580.1 412 71.6
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 3.9e-163 578.6 412 71.4
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.3e-162 575.1 412 70.9
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 2.1e-161 572.8 412 70.9
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.1e-161 572.8 412 70.9
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 3.7e-161 572.0 413 71.4
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 6.9e-160 567.8 410 69.8
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 2.0e-159 566.2 417 69.8
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 7.6e-159 564.3 410 70.2
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.0e-158 563.9 417 70.0
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 4.6e-156 555.1 414 68.6
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 7.9e-156 554.3 412 69.2
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 1.0e-155 553.9 411 68.1
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 3.0e-155 552.4 410 69.3
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 6.7e-155 551.2 410 69.3
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 1.5e-154 550.1 377 74.3
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 9.6e-154 547.4 410 69.3
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 2.8e-153 545.8 406 70.0
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 3.7e-153 545.4 437 65.7
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 6.2e-153 544.7 413 69.0
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 1.8e-152 543.1 418 66.0
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 1.0e-150 537.3 410 68.8
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 1.3e-150 537.0 406 68.7
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 1.4e-149 533.5 408 68.4
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 1.4e-149 533.5 411 68.4
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 3.2e-149 532.3 407 66.1
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 1.2e-148 530.4 408 68.1
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 2.7e-148 529.3 404 67.1
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 3.5e-148 528.9 399 68.2
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 2.3e-147 526.2 409 66.0
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 2.3e-147 526.2 408 66.7
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 8.7e-147 524.2 404 67.3
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 1.5e-146 523.5 404 66.8
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 1.9e-146 523.1 408 67.2
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 2.5e-146 522.7 384 69.5
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 2.5e-146 522.7 410 67.1
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 7.4e-146 521.2 479 58.9
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 9.7e-146 520.8 409 66.5
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 2.2e-145 519.6 394 68.3
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 3.7e-145 518.8 406 66.5
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 4.8e-145 518.5 398 66.3
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 1.4e-144 516.9 406 66.5
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 1.8e-144 516.5 405 65.9
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 1.8e-144 516.5 404 66.3
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 2.4e-144 516.2 409 66.5
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 3.4e-143 512.3 412 66.7
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 3.4e-143 512.3 408 65.7
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 4.5e-143 511.9 404 65.8
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 6.5e-142 508.1 408 65.0
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 2.5e-141 506.1 388 64.9
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 3.2e-141 505.8 399 66.4
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 4.2e-141 505.4 408 65.2
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 1.0e-139 500.7 411 61.8
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 3.9e-139 498.8 397 65.2
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 8.8e-139 497.7 355 73.2
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 1.1e-138 497.3 409 64.5
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 5.7e-138 495.0 401 64.1
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 9.7e-138 494.2 385 66.5
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 1.1e-136 490.7 418 63.6
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 1.4e-136 490.3 412 62.1
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 5.3e-136 488.4 417 62.8
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 1.2e-135 487.3 413 61.7
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 2.1e-132 476.5 420 64.0
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 3.6e-132 475.7 406 59.6
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 1.5e-130 470.3 419 59.2
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 4.4e-130 468.8 409 59.2
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 6.3e-129 464.9 395 61.5
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 1.8e-128 463.4 418 58.6
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 1.3e-126 457.2 396 59.8
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 2.9e-126 456.1 341 69.8
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 5.0e-126 455.3 362 66.6
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 1.9e-125 453.4 350 68.0
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 4.2e-125 452.2 415 56.9
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 4.2e-125 452.2 384 61.2
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 3.0e-123 446.0 416 57.2
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 8.8e-123 444.5 374 61.0
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 2.0e-122 443.4 390 59.2
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 4.4e-122 442.2 390 57.2
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 1.3e-121 440.7 369 64.0
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 5.9e-119 431.8 415 58.3
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 2.5e-117 426.4 358 60.1
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 2.5e-117 426.4 421 54.9
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 3.2e-117 426.0 420 56.9
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 9.4e-117 424.5 362 59.4
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 1.2e-116 424.1 420 56.7
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 2.7e-116 422.9 389 59.4
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 6.1e-116 421.8 415 56.1
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 8.0e-116 421.4 415 56.1
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 1.8e-115 420.2 346 63.3
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 3.0e-115 419.5 351 62.7
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 1.3e-113 414.1 389 56.6
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 1.3e-113 414.1 346 62.7
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 8.3e-113 411.4 391 57.3
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.1e-112 409.1 301 70.8
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 3.8e-110 402.5 445 48.8
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.1e-109 401.0 458 47.8
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 4.2e-109 399.1 389 54.5
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 4.2e-109 399.1 420 52.6
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 5.5e-109 398.7 352 61.1
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 5.2e-107 392.1 426 50.5
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 4.9e-89 332.4 458 42.1
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.2e-84 317.8 370 44.1
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 1.4e-83 314.3 456 39.0
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 4.0e-83 312.8 265 58.9
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.1e-75 288.1 306 50.7
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 1.8e-75 287.3 217 64.5
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 5.2e-75 285.8 201 72.1
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 5.2e-75 285.8 353 50.4
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.2e-71 274.6 189 72.5
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 3.6e-68 263.1 286 51.0
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 8.9e-67 258.5 402 39.1
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 8.9e-67 258.5 193 68.4
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 2.1e-60 237.3 155 75.5
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 2.0e-58 230.7 235 53.6
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 4.2e-48 196.4 130 73.1
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 1.9e-45 187.6 132 72.7
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 8.1e-44 182.2 400 31.0
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 1.6e-39 167.9 337 32.6
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 2.7e-39 167.2 136 62.5
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 1.8e-38 164.5 306 37.9
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 3.7e-36 156.8 309 31.4
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.9e-35 152.5 124 66.1
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.4e-32 144.8 155 50.3
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 2.3e-30 137.5 90 71.1
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 1.4e-27 128.3 165 44.8
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 2.6e-26 124.0 78 74.4
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 2.9e-25 120.6 599 23.9
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 2.2e-17 94.4 132 43.9
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 7.2e-16 89.4 49 81.6
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 5.3e-11 73.2 51 70.6
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 2.0e-10 71.2 104 42.3
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 1.9e-08 64.7 81 45.7
PRCOL_00002153 Prasinoderma coloniale HOM05D024116 ORTHO05D023526 1.2e-07 62.0 324 24.4
SMO348G0061 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 3.0e-06 57.4 153 26.8
MD05G1136200 Malus domestica HOM05D002505 ORTHO05D007115 6.7e-06 56.2 31 77.4


User provided reference genes

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