Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G003300 Manihot esculenta HOM05D007894 ORTHO05D009691 1.9e-150 535.8 267 100.0
MD14G1125500 Malus domestica HOM05D007894 ORTHO05D009691 1.2e-75 287.3 270 60.7
Prupe.5G129000 Prunus persica HOM05D007894 ORTHO05D009691 4.9e-74 282.0 268 61.2
MD06G1117900 Malus domestica HOM05D007894 ORTHO05D009691 9.3e-73 277.7 262 58.8
RcHm_v2.0_Chr7g0186241 Rosa chinensis HOM05D007894 ORTHO05D009691 1.2e-72 277.3 265 60.0
RcHm_v2.0_Chr7g0186841 Rosa chinensis HOM05D007894 ORTHO05D009691 2.7e-72 276.2 265 60.4
Thecc.03G221700 Theobroma cacao HOM05D007894 ORTHO05D009691 6.0e-72 275.0 267 59.9
FAN18G0782 Fragaria x ananassa HOM05D007894 ORTHO05D009691 1.3e-71 273.9 264 60.6
FvH4_5g10980 Fragaria vesca HOM05D007894 ORTHO05D009691 3.9e-71 272.3 264 60.2
COL.COLO4_10790 Corchorus olitorius HOM05D007894 ORTHO05D009691 8.7e-71 271.2 269 58.0
FAN08G2177 Fragaria x ananassa HOM05D007894 ORTHO05D009691 2.5e-70 269.6 269 57.6
FAN04G2047 Fragaria x ananassa HOM05D007894 ORTHO05D009691 9.6e-70 267.7 266 58.6
FAN13G0186 Fragaria x ananassa HOM05D007894 ORTHO05D009691 4.8e-69 265.4 264 59.1
Duzib084G0115 Durio zibethinus HOM05D007894 ORTHO05D009691 8.1e-69 264.6 266 56.4
TWI81G0638 Tripterygium wilfordii HOM05D007894 ORTHO05D009691 1.4e-68 263.8 265 54.0
CiPaw.11G113300 Carya illinoinensis HOM05D007894 ORTHO05D009691 1.2e-67 260.8 269 55.8
Potri.001G082500 Populus trichocarpa HOM05D007894 ORTHO05D009691 1.2e-67 260.8 268 56.0
Haze_09166 Corylus avellana HOM05D007894 ORTHO05D009691 4.9e-66 255.4 264 56.4
Gohir.A12G239800 Gossypium hirsutum HOM05D007894 ORTHO05D009691 1.4e-65 253.8 266 53.0
Gorai.008G258200 Gossypium raimondii HOM05D007894 ORTHO05D009691 1.2e-64 250.8 266 53.4
TAR629G0466 Trochodendron aralioides HOM05D007894 ORTHO05D009691 3.5e-64 249.2 269 54.3
Cpa.g.sc175.21 Carica papaya HOM05D007894 ORTHO05D009691 2.3e-63 246.5 250 55.6
Cfa011931 Carpinus fangiana HOM05D007894 ORTHO05D009691 1.5e-62 243.8 270 53.7
Sabra03G0106300 Salix brachista HOM05D007894 ORTHO05D009691 1.5e-62 243.8 248 54.4
Gohir.D08G123100 Gossypium hirsutum HOM05D007894 ORTHO05D009691 1.9e-62 243.4 266 51.1
Gohir.A08G110200 Gossypium hirsutum HOM05D007894 ORTHO05D009691 5.6e-62 241.9 266 51.5
QL02p028226 Quercus lobata HOM05D007894 ORTHO05D009691 5.6e-62 241.9 283 50.2
Gohir.D12G241000 Gossypium hirsutum HOM05D007894 ORTHO05D009691 1.6e-61 240.4 268 53.7
Gorai.004G129900 Gossypium raimondii HOM05D007894 ORTHO05D009691 4.8e-61 238.8 266 50.8
Atru.chr9.1896 Acer truncatum HOM05D007894 ORTHO05D009691 6.9e-60 235.0 273 48.0
Aa31LG6G7360 Aethionema arabicum HOM05D007894 ORTHO05D009691 3.4e-59 232.6 266 53.0
Potri.003G147800 Populus trichocarpa HOM05D007894 ORTHO05D009691 1.3e-58 230.7 268 53.4
CiPaw.12G077900 Carya illinoinensis HOM05D007894 ORTHO05D009691 8.4e-58 228.0 285 49.1
Sp7g22070 Schrenkiella parvula HOM05D007894 ORTHO05D009691 1.9e-57 226.9 266 51.1
CANSAT21G2064 Cannabis sativa HOM05D007894 ORTHO05D009691 1.0e-55 221.1 268 50.7
THA.LOC104815238 Tarenaya hassleriana HOM05D007894 ORTHO05D009691 1.3e-55 220.7 261 51.3
PGR042G1438 Punica granatum HOM05D007894 ORTHO05D009691 1.8e-55 220.3 277 48.4
BcaNung01115 Brassica carinata HOM05D007894 ORTHO05D009691 2.3e-55 219.9 264 48.9
ClCG01G001550 Citrullus lanatus HOM05D007894 ORTHO05D009691 8.7e-55 218.0 272 48.2
Ciclev10021739m.g Citrus clementina HOM05D007894 ORTHO05D009691 1.5e-54 217.2 275 47.3
Dinv12925 Davidia involucrata HOM05D007894 ORTHO05D009691 1.6e-53 213.8 256 49.6
Lj8P201T33 Lonicera japonica HOM05D007894 ORTHO05D009691 2.1e-53 213.4 265 47.9
MBI12_g30970_MAGBIO Magnolia biondii HOM05D007894 ORTHO05D009691 2.8e-53 213.0 275 48.4
Lsat_1_v5_gn_3_14101 Lactuca sativa HOM05D007894 ORTHO05D009691 4.8e-53 212.2 267 48.7
Nn3g18883 Nelumbo nucifera HOM05D007894 ORTHO05D009691 1.8e-52 210.3 272 47.1
MELO3C005782.2 Cucumis melo HOM05D007894 ORTHO05D009691 2.4e-52 209.9 269 46.8
Sed0027072 Sechium edule HOM05D007894 ORTHO05D009691 3.1e-52 209.5 263 48.3
CARHR231510 Cardamine hirsuta HOM05D007894 ORTHO05D009691 6.9e-52 208.4 273 48.4
CsaV3_5G001720 Cucumis sativus L. HOM05D007894 ORTHO05D009691 1.5e-51 207.2 273 45.8
Thhalv10026087m.g Eutrema salsugineum HOM05D007894 ORTHO05D009691 2.6e-51 206.5 263 47.9
Carub.0007s1699 Capsella rubella HOM05D007894 ORTHO05D009691 7.6e-51 204.9 269 48.0
A01p15370 Brassica napus HOM05D007894 ORTHO05D009691 1.3e-50 204.1 261 47.9
Sabra03G0107400 Salix brachista HOM05D001294 ORTHO05D009691 3.2e-49 199.5 242 49.2
BcaC09g50910 Brassica carinata HOM05D007894 ORTHO05D009691 9.3e-49 198.0 262 46.6
PGSC0003DMG400012120 Solanum tuberosum HOM05D007894 ORTHO05D009691 1.6e-48 197.2 262 45.4
C01p19320 Brassica napus HOM05D007894 ORTHO05D009691 4.6e-48 195.7 247 47.8
BolC1t01858H Brassica oleracea HOM05D007894 ORTHO05D009691 4.6e-48 195.7 247 47.8
Sc16g0010770 Simmondsia chinensis HOM05D007894 ORTHO05D009691 4.6e-48 195.7 275 42.5
Nitab4.5_0004251g0020 Nicotiana tabacum HOM05D007894 ORTHO05D009691 3.0e-47 193.0 271 43.9
Nitab4.5_0007063g0010 Nicotiana tabacum HOM05D007894 ORTHO05D009691 4.3e-46 189.1 265 44.9
DCAR_006541 Daucus carota HOM05D007894 ORTHO05D009691 9.7e-46 188.0 269 44.6
AL7G29180 Arabidopsis lyrata HOM05D007894 ORTHO05D009691 1.3e-45 187.6 266 44.7
Sopen08g031270 Solanum pennellii HOM05D007894 ORTHO05D009691 1.6e-45 187.2 261 44.1
Aqoxy7G00025 Aquilegia oxysepala HOM05D007894 ORTHO05D009691 2.2e-45 186.8 260 46.2
AT4G24110 Arabidopsis thaliana HOM05D007894 ORTHO05D009691 1.1e-44 184.5 268 44.0
MSTRG.12199 Avicennia marina HOM05D007894 ORTHO05D009691 5.3e-44 182.2 267 45.3
HanXRQChr03g0086121 Helianthus annuus HOM05D007894 ORTHO05D009691 2.0e-43 180.3 272 44.5
Oeu043316.1 Olea europaea HOM05D007894 ORTHO05D009691 2.0e-43 180.3 268 41.0
ECA246G0434 Erigeron canadensis HOM05D007894 ORTHO05D009691 3.9e-39 166.0 274 44.5
Peaxi162Scf00074g00316 Petunia axillaris HOM05D007894 ORTHO05D009691 3.9e-39 166.0 269 41.6
Ah.03g148140 Amaranthus hybridus HOM05D007894 ORTHO05D009691 9.4e-33 144.8 270 38.1
Solyc08g083050.1 Solanum lycopersicum HOM05D007894 ORTHO05D009691 6.1e-32 142.1 259 37.5
PSO170G2911 Papaver somniferum HOM05D007894 ORTHO05D009691 1.0e-31 141.4 287 36.2
CDE07G1250 Ceratophyllum demersum HOM05D006631 ORTHO05D008359 8.2e-29 131.7 206 41.3
Migut.O00947 Erythranthe guttata HOM05D007894 ORTHO05D009691 9.1e-28 128.3 225 39.6
Zm00001eb000900 Zea mays HOM05D019640 ORTHO05D009691 2.2e-21 107.1 269 34.2
Lj6g0022493 Lotus japonicus HOM05D007894 ORTHO05D009691 3.7e-21 106.3 288 32.6
Actinidia22204 Actinidia chinensis HOM05D007894 ORTHO05D009691 6.3e-21 105.5 113 49.6
PSO017G1799 Papaver somniferum HOM05D007894 ORTHO05D009691 1.6e-19 100.9 188 38.3
FAN10G4307 Fragaria x ananassa HOM05D007894 ORTHO05D009691 1.0e-18 98.2 89 55.1
CDE04G0050 Ceratophyllum demersum HOM05D000458 ORTHO05D000951 2.5e-17 93.6 236 28.0
CDE12G0970 Ceratophyllum demersum HOM05D007894 ORTHO05D009691 3.6e-16 89.7 182 32.4
HPP92_007394 Vanilla planifolia HOM05D007894 ORTHO05D009691 3.4e-14 83.2 150 39.3
arahy.Tifrunner.gnm1.ann1.5IWW39 Arachis hypogaea HOM05D015518 ORTHO05D017458 9.1e-12 75.1 264 29.2
ATR0620G121 Amborella trichopoda HOM05D007894 ORTHO05D009691 6.5e-10 68.9 320 30.3
TWI36G0036 Tripterygium wilfordii HOM05D001555 ORTHO05D001616 1.2e-08 64.7 187 27.8
Thecc.08G026300 Theobroma cacao HOM05D001555 ORTHO05D001616 1.6e-08 64.3 187 27.3
unitig_62.g23645 Utricularia gibba HOM05D007894 ORTHO05D009691 1.6e-08 64.3 103 42.7
arahy.Tifrunner.gnm1.ann1.FCR0TM Arachis hypogaea HOM05D015518 ORTHO05D017458 2.1e-08 63.9 263 27.4
Gohir.D08G154000 Gossypium hirsutum HOM05D001555 ORTHO05D001616 2.1e-08 63.9 107 37.4
Gorai.004G159900 Gossypium raimondii HOM05D001555 ORTHO05D001616 2.1e-08 63.9 179 31.3
unitig_62.g23646 Utricularia gibba HOM05D007894 ORTHO05D009691 2.1e-08 63.9 85 43.5
Rhsim01G0165500 Rhododendron simsii HOM05D001555 ORTHO05D001616 3.6e-08 63.2 198 29.8
Rhsim11G0002600 Rhododendron simsii HOM05D001555 ORTHO05D001616 3.6e-08 63.2 198 29.8
Ciclev10001904m.g Citrus clementina HOM05D001555 ORTHO05D001616 4.7e-08 62.8 187 28.9
Potri.009G115800 Populus trichocarpa HOM05D001555 ORTHO05D001616 4.7e-08 62.8 210 26.7
arahy.Tifrunner.gnm1.ann1.S6U7JB Arachis hypogaea HOM05D001555 ORTHO05D001616 8.0e-08 62.0 204 27.5
arahy.Tifrunner.gnm1.ann1.UMAR0Y Arachis hypogaea HOM05D001555 ORTHO05D001616 8.0e-08 62.0 204 27.5
SEGI_23142 Sequoiadendron giganteum HOM05D001555 ORTHO05D009691 8.0e-08 62.0 131 29.8
vmacro20900 Vaccinium macrocarpon HOM05D001555 ORTHO05D001616 8.0e-08 62.0 205 27.8
DCAR_025212 Daucus carota HOM05D001555 ORTHO05D001616 1.0e-07 61.6 191 30.9
HanXRQChr02g0042101 Helianthus annuus HOM05D001555 ORTHO05D001616 1.4e-07 61.2 184 26.6
CANSAT25G0359 Cannabis sativa HOM05D001555 ORTHO05D001616 1.8e-07 60.8 201 26.9
SEGI_01002 Sequoiadendron giganteum HOM05D001555 ORTHO05D009691 1.8e-07 60.8 190 27.9
ECA247G3317 Erigeron canadensis HOM05D001555 ORTHO05D001616 2.3e-07 60.5 196 26.0
Eucgr.F01567 Eucalyptus grandis HOM05D001555 ORTHO05D001616 2.3e-07 60.5 200 26.0
Gohir.D11G096800 Gossypium hirsutum HOM05D001555 ORTHO05D001616 2.3e-07 60.5 108 36.1
Peaxi162Scf00585g00033 Petunia axillaris HOM05D001555 ORTHO05D001616 2.3e-07 60.5 181 30.9
Cc10_g02910 Coffea canephora HOM05D001555 ORTHO05D001616 3.0e-07 60.1 199 28.1
COL.COLO4_26322 Corchorus olitorius HOM05D001555 ORTHO05D001616 3.0e-07 60.1 199 27.6
Potri.002G260900 Populus trichocarpa HOM05D001555 ORTHO05D001616 3.0e-07 60.1 187 25.7
PGR031G0269 Punica granatum HOM05D004139 ORTHO05D004873 3.0e-07 60.1 205 30.2
TWI12G1279 Tripterygium wilfordii HOM05D001555 ORTHO05D001616 4.0e-07 59.7 197 25.9
Eucgr.D02322 Eucalyptus grandis HOM05D001555 ORTHO05D001616 6.8e-07 58.9 202 30.7
Gohir.A11G092000 Gossypium hirsutum HOM05D001555 ORTHO05D001616 6.8e-07 58.9 108 35.2
Gorai.007G103100 Gossypium raimondii HOM05D001555 ORTHO05D001616 6.8e-07 58.9 108 35.2
HanXRQChr09g0268891 Helianthus annuus HOM05D001555 ORTHO05D001616 6.8e-07 58.9 181 28.7
Thecc.01G353200 Theobroma cacao HOM05D001555 ORTHO05D001616 6.8e-07 58.9 177 29.9
CsaV3_2G028650 Cucumis sativus L. HOM05D001555 ORTHO05D001616 1.2e-06 58.2 197 25.4
Lsat_1_v5_gn_4_119500 Lactuca sativa HOM05D001555 ORTHO05D001616 1.2e-06 58.2 186 28.5
Aa31LG7G4120 Aethionema arabicum HOM05D001555 ORTHO05D001616 1.5e-06 57.8 228 26.8
BcaB05g24887 Brassica carinata HOM05D001555 ORTHO05D001616 1.5e-06 57.8 178 27.0
TAR375G0826 Trochodendron aralioides HOM05D001555 ORTHO05D001616 1.5e-06 57.8 122 31.1
CSS0000270 Camellia sinensis var. sinensis HOM05D001555 ORTHO05D001616 2.0e-06 57.4 188 29.8
CSS0017756 Camellia sinensis var. sinensis HOM05D001555 ORTHO05D001616 2.0e-06 57.4 188 29.8
MELO3C010938.2 Cucumis melo HOM05D001555 ORTHO05D001616 2.0e-06 57.4 197 25.9
MD01G1070200 Malus domestica HOM05D001555 ORTHO05D001616 2.0e-06 57.4 117 35.0
Sp1g17300 Schrenkiella parvula HOM05D001555 ORTHO05D001616 2.0e-06 57.4 129 28.7
TAR381G1049 Trochodendron aralioides HOM05D001555 ORTHO05D001616 2.0e-06 57.4 187 27.8
BolC5t28840H Brassica oleracea HOM05D004139 ORTHO05D004873 2.6e-06 57.0 190 31.6
BolC6t39949H Brassica oleracea HOM05D001555 ORTHO05D001616 2.6e-06 57.0 144 31.2
PSO675G7737 Papaver somniferum HOM05D001555 ORTHO05D001616 2.6e-06 57.0 204 26.0
PGR042G0054 Punica granatum HOM05D001555 ORTHO05D001616 2.6e-06 57.0 225 24.9
Lj7C508G10 Lonicera japonica HOM05D001555 ORTHO05D001616 3.4e-06 56.6 212 27.8
Lalb_Chr23g0273501 Lupinus albus HOM05D015518 ORTHO05D017458 3.4e-06 56.6 113 34.5
PSO541G5052 Papaver somniferum HOM05D001555 ORTHO05D001616 3.4e-06 56.6 204 26.0
Atru.chr5.555 Acer truncatum HOM05D001555 ORTHO05D001616 4.4e-06 56.2 183 27.3
A10p00480 Brassica napus HOM05D004139 ORTHO05D004873 4.4e-06 56.2 217 29.5
AUR62004406 Chenopodium quinoa HOM05D001555 ORTHO05D001616 4.4e-06 56.2 177 27.1
Lsat_1_v5_gn_1_17701 Lactuca sativa HOM05D001555 ORTHO05D001616 4.4e-06 56.2 187 26.2
Lalb_Chr24g0398971 Lupinus albus HOM05D001555 ORTHO05D001616 4.4e-06 56.2 201 27.9
Nitab4.5_0005373g0040 Nicotiana tabacum HOM05D001555 ORTHO05D001616 4.4e-06 56.2 216 28.7
Sc01g0003250 Simmondsia chinensis HOM05D001555 ORTHO05D001616 4.4e-06 56.2 209 27.3
A07p40770 Brassica napus HOM05D001555 ORTHO05D001616 5.7e-06 55.8 134 32.1
BraA07t31619Z Brassica rapa HOM05D001555 ORTHO05D001616 5.7e-06 55.8 134 32.1
DCAR_008756 Daucus carota HOM05D001555 ORTHO05D001616 5.7e-06 55.8 200 27.5
MBI16_g41746_MAGBIO Magnolia biondii HOM05D001555 ORTHO05D001616 5.7e-06 55.8 214 25.2
Nitab4.5_0006280g0030 Nicotiana tabacum HOM05D001555 ORTHO05D001616 5.7e-06 55.8 201 27.4
TAR629G0062 Trochodendron aralioides HOM05D001555 ORTHO05D001616 5.7e-06 55.8 102 34.3
Aa31LG1G10770 Aethionema arabicum HOM05D001555 ORTHO05D001616 7.5e-06 55.5 149 28.9
Dinv32516 Davidia involucrata HOM05D001555 ORTHO05D001616 7.5e-06 55.5 223 24.2
MBI04_g15072_MAGBIO Magnolia biondii HOM05D001555 ORTHO05D001616 7.5e-06 55.5 113 31.0
Oeu000773.1 Olea europaea HOM05D001555 ORTHO05D001616 7.5e-06 55.5 196 27.0
Oeu000774.1 Olea europaea HOM05D001555 ORTHO05D001616 7.5e-06 55.5 196 27.0
Oeu002833.2 Olea europaea HOM05D001555 ORTHO05D001616 7.5e-06 55.5 220 27.7
Aqoxy6G01105 Aquilegia oxysepala HOM05D001555 ORTHO05D001616 9.8e-06 55.1 188 26.6
RcHm_v2.0_Chr1g0357581 Rosa chinensis HOM05D001555 ORTHO05D001616 9.8e-06 55.1 117 32.5


User provided reference genes

Program Settings