Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 8.3e-190 667.2 410 100.0
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 2.3e-123 446.4 413 76.3
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 7.4e-122 441.4 371 82.5
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 2.2e-121 439.9 348 76.4
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 9.1e-120 434.5 367 81.2
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 5.9e-119 431.8 373 81.8
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 7.7e-119 431.4 432 66.2
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.3e-118 430.6 365 82.2
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 6.5e-118 428.3 418 74.2
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 5.5e-117 425.2 367 78.7
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 2.7e-116 422.9 419 70.6
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 8.0e-116 421.4 346 82.4
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 8.0e-116 421.4 370 71.4
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 1.8e-115 420.2 371 71.7
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 3.0e-115 419.5 437 70.3
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 4.0e-115 419.1 412 73.3
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 5.2e-115 418.7 425 65.4
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 8.8e-115 417.9 424 70.5
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 8.8e-115 417.9 410 65.9
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 2.0e-114 416.8 389 68.9
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 5.7e-114 415.2 337 74.8
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 9.8e-114 414.5 374 75.9
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 9.8e-114 414.5 358 77.9
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.3e-113 414.1 376 75.8
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 4.8e-113 412.1 374 76.2
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 8.3e-113 411.4 395 73.7
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 8.3e-113 411.4 357 70.3
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.1e-112 411.0 383 62.4
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 4.1e-112 409.1 391 73.9
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 7.0e-112 408.3 366 71.0
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-111 407.5 376 77.4
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 2.0e-111 406.8 392 73.7
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 2.7e-111 406.4 421 68.9
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 4.5e-111 405.6 395 74.4
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 4.5e-111 405.6 363 75.5
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 4.5e-111 405.6 402 66.7
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 7.7e-111 404.8 383 75.7
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.7e-111 404.8 417 70.5
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 1.0e-110 404.4 397 71.3
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 1.3e-110 404.1 445 68.5
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 1.3e-110 404.1 355 71.8
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 1.7e-110 403.7 430 69.1
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.7e-110 403.7 376 76.9
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 2.2e-110 403.3 402 72.6
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 2.2e-110 403.3 351 78.9
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 2.9e-110 402.9 327 77.4
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 5.0e-110 402.1 348 79.3
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 6.5e-110 401.7 355 77.7
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.5e-110 401.4 415 70.6
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 8.5e-110 401.4 393 72.5
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 8.5e-110 401.4 389 73.8
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 1.9e-109 400.2 415 70.6
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.9e-109 400.2 373 75.9
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 2.5e-109 399.8 377 69.0
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 3.2e-109 399.4 346 78.0
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.2e-109 399.1 411 70.8
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 4.2e-109 399.1 371 67.9
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 5.5e-109 398.7 395 72.2
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 7.2e-109 398.3 340 80.6
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 9.4e-109 397.9 421 64.1
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 1.2e-108 397.5 366 68.6
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 2.7e-108 396.4 366 73.2
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 2.7e-108 396.4 367 69.8
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 3.6e-108 396.0 378 67.7
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 1.8e-107 393.7 360 68.6
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 2.3e-107 393.3 371 67.4
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.8e-107 391.7 359 76.0
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 1.2e-106 391.0 383 71.8
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.5e-106 390.6 359 75.8
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 3.4e-106 389.4 375 66.7
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 5.7e-106 388.7 337 79.5
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 9.8e-106 387.9 377 65.3
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.7e-105 386.0 358 75.4
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.7e-105 386.0 408 64.2
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 1.4e-104 384.0 494 51.2
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 4.1e-104 382.5 401 70.8
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 4.5e-103 379.0 297 86.9
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 5.9e-103 378.6 485 51.8
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 7.7e-103 378.3 367 73.3
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 2.3e-102 376.7 328 72.6
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 3.8e-102 375.9 358 74.0
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 3.8e-102 375.9 358 74.0
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 3.8e-102 375.9 358 74.0
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 5.0e-102 375.6 436 63.8
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 6.6e-102 375.2 366 72.4
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 2.5e-101 373.2 357 74.2
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 4.2e-101 372.5 416 61.5
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 7.2e-101 371.7 360 74.2
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 1.2e-100 370.9 366 72.7
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 2.1e-100 370.2 354 70.3
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 3.6e-100 369.4 307 73.3
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 4.7e-100 369.0 356 67.7
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 1.0e-99 367.9 410 66.8
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 2.3e-99 366.7 404 64.6
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 5.2e-99 365.5 367 72.8
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 5.7e-98 362.1 343 66.2
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 7.5e-98 361.7 349 67.6
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 2.9e-97 359.8 282 78.0
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 8.3e-97 358.2 363 71.6
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 1.2e-95 354.4 324 77.5
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 2.7e-95 353.2 378 64.0
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 7.8e-95 351.7 387 55.6
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 1.0e-94 351.3 389 68.4
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.3e-94 350.9 359 60.4
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 2.3e-94 350.1 255 76.1
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 5.0e-94 349.0 399 61.9
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 9.5e-93 344.7 408 63.0
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.6e-92 344.0 372 70.7
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 2.1e-92 343.6 400 60.8
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 3.6e-92 342.8 303 71.6
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 6.8e-91 338.6 401 65.3
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 6.8e-91 338.6 371 69.5
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 3.4e-90 336.3 408 65.7
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.3e-89 334.3 334 74.3
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 2.2e-89 333.6 334 72.2
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 2.4e-88 330.1 385 66.5
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 4.9e-81 305.8 368 57.6
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 5.4e-80 302.4 301 70.4
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.2e-79 301.2 393 56.5
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 4.6e-79 299.3 282 77.7
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 5.1e-78 295.8 363 65.3
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 4.0e-75 286.2 360 50.3
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 6.8e-75 285.4 292 74.7
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 3.7e-73 279.6 324 63.3
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 3.4e-66 256.5 233 70.8
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 1.4e-64 251.1 228 78.5
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.4e-56 223.8 286 62.2
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 7.1e-56 222.2 180 62.8
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 2.1e-55 220.7 342 54.4
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 4.5e-50 203.0 125 79.2
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 7.9e-47 192.2 141 70.9
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 4.6e-39 166.4 266 44.0
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.1e-35 155.2 95 83.2
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 3.0e-22 110.5 299 29.8
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 2.2e-17 94.4 56 80.4
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 6.5e-17 92.8 141 36.9
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 1.9e-16 91.3 62 72.6
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 2.7e-15 87.4 55 72.7
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 9.7e-13 79.0 71 63.4
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 8.2e-12 75.9 52 73.1
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 8.2e-12 75.9 62 64.5
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 5.3e-11 73.2 56 62.5
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.7e-09 68.2 42 66.7
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.9e-08 64.7 51 56.9
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 1.9e-08 64.7 68 54.4
QL02p028181 Quercus lobata HOM05D004623 ORTHO05D005100 5.5e-08 63.2 64 59.4
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.4e-08 62.4 41 61.0
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.1e-07 61.2 40 65.0
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.3e-06 57.8 45 57.8
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.3e-06 57.8 45 57.8
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 5.2e-06 56.6 123 34.1


User provided reference genes

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