Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 2.8e-55 218.4 113 100.0
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 7.8e-21 104.0 110 59.1
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 5.0e-20 101.3 109 59.6
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 3.2e-14 82.0 110 51.8
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 7.0e-14 80.9 115 51.3
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 7.0e-14 80.9 110 50.9
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 9.2e-14 80.5 104 54.8
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 9.2e-14 80.5 107 48.6
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 1.2e-13 80.1 110 50.9
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.2e-13 80.1 110 50.9
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.6e-13 79.7 110 50.0
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 3.5e-13 78.6 105 50.5
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 3.5e-13 78.6 116 50.0
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 6.0e-13 77.8 105 54.3
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 6.0e-13 77.8 99 55.6
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 7.8e-13 77.4 113 51.3
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.0e-12 77.0 94 55.3
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 3.0e-12 75.5 107 46.7
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 8.6e-12 73.9 104 53.8
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 1.1e-11 73.6 119 42.0
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 1.5e-11 73.2 98 53.1
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 1.5e-11 73.2 70 67.1
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.5e-11 73.2 99 53.5
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 1.9e-11 72.8 109 49.5
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.9e-11 72.8 48 75.0
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 2.5e-11 72.4 110 46.4
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 3.3e-11 72.0 101 45.5
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 4.3e-11 71.6 105 53.3
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 4.3e-11 71.6 107 51.4
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 5.6e-11 71.2 98 48.0
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 7.3e-11 70.9 92 51.1
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 7.3e-11 70.9 110 43.6
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 9.5e-11 70.5 94 48.9
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 1.2e-10 70.1 79 54.4
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 2.8e-10 68.9 93 51.6
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 4.7e-10 68.2 50 72.0
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 6.2e-10 67.8 64 64.1
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 6.2e-10 67.8 114 45.6
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 6.2e-10 67.8 65 60.0
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 6.2e-10 67.8 100 48.0
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 6.2e-10 67.8 63 58.7
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 8.1e-10 67.4 98 50.0
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 8.1e-10 67.4 104 48.1
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 1.1e-09 67.0 104 46.2
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 1.1e-09 67.0 77 51.9
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.1e-09 67.0 99 44.4
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.4e-09 66.6 100 47.0
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.4e-09 66.6 43 81.4
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.4e-09 66.6 43 81.4
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 1.4e-09 66.6 96 50.0
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 1.8e-09 66.2 82 50.0
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.8e-09 66.2 61 60.7
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 1.8e-09 66.2 101 48.5
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 2.3e-09 65.9 61 62.3
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 2.3e-09 65.9 103 44.7
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 3.1e-09 65.5 90 48.9
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 3.1e-09 65.5 61 60.7
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 3.1e-09 65.5 61 60.7
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 3.1e-09 65.5 61 60.7
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 3.1e-09 65.5 61 60.7
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 3.1e-09 65.5 61 60.7
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.1e-09 65.5 94 47.9
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 3.1e-09 65.5 94 46.8
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 3.1e-09 65.5 99 45.5
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 3.1e-09 65.5 99 44.4
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 4.0e-09 65.1 99 44.4
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 4.0e-09 65.1 99 45.5
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 5.2e-09 64.7 78 53.8
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 5.2e-09 64.7 83 47.0
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 6.8e-09 64.3 91 48.4
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 8.9e-09 63.9 80 45.0
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 8.9e-09 63.9 67 58.2
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 8.9e-09 63.9 49 73.5
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 1.2e-08 63.5 82 50.0
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.2e-08 63.5 94 46.8
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.2e-08 63.5 98 45.9
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.2e-08 63.5 80 48.8
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.5e-08 63.2 88 48.9
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 2.0e-08 62.8 61 60.7
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.0e-08 62.8 77 51.9
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 2.0e-08 62.8 83 48.2
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 2.0e-08 62.8 50 60.0
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.0e-08 62.8 66 53.0
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 2.0e-08 62.8 97 42.3
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 2.0e-08 62.8 94 50.0
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 2.6e-08 62.4 61 59.0
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 2.6e-08 62.4 78 51.3
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.6e-08 62.4 76 56.6
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.6e-08 62.4 51 68.6
Manes.05G044050 Manihot esculenta HOM05D003683 ORTHO05D004143 2.6e-08 62.4 49 73.5
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 3.4e-08 62.0 96 42.7
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 3.4e-08 62.0 61 57.4
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 4.4e-08 61.6 63 57.1
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.4e-08 61.6 114 43.0
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 5.8e-08 61.2 69 55.1
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 5.8e-08 61.2 63 57.1
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 5.8e-08 61.2 61 55.7
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 5.8e-08 61.2 61 55.7
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 5.8e-08 61.2 84 44.0
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.8e-08 61.2 76 55.3
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 5.8e-08 61.2 93 46.2
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 5.8e-08 61.2 44 72.7
PGR031G2056 Punica granatum HOM05D003683 ORTHO05D004143 5.8e-08 61.2 105 45.7
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 5.8e-08 61.2 52 57.7
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 7.5e-08 60.8 80 48.8
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 7.5e-08 60.8 64 59.4
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 7.5e-08 60.8 81 50.6
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 7.5e-08 60.8 44 72.7
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 9.9e-08 60.5 84 42.9
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 9.9e-08 60.5 89 49.4
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 9.9e-08 60.5 102 45.1
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 9.9e-08 60.5 87 47.1
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 1.3e-07 60.1 45 71.1
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.3e-07 60.1 61 57.4
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 1.3e-07 60.1 63 55.6
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 1.3e-07 60.1 63 55.6
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 1.3e-07 60.1 63 55.6
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.3e-07 60.1 78 50.0
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.3e-07 60.1 50 60.0
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 1.3e-07 60.1 102 47.1
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 1.3e-07 60.1 78 51.3
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 1.7e-07 59.7 96 43.8
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 2.2e-07 59.3 47 66.0
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 2.2e-07 59.3 101 42.6
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 2.2e-07 59.3 115 39.1
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 2.9e-07 58.9 61 52.5
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 2.9e-07 58.9 61 52.5
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 2.9e-07 58.9 61 52.5
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 2.9e-07 58.9 42 71.4
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.9e-07 58.9 89 48.3
C08p28060 Brassica napus HOM05D003360 ORTHO05D003759 3.7e-07 58.5 63 54.0
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 3.7e-07 58.5 43 69.8
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 4.9e-07 58.2 64 56.2
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 4.9e-07 58.2 83 47.0
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 4.9e-07 58.2 52 63.5
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 4.9e-07 58.2 73 50.7
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 6.4e-07 57.8 111 39.6
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 6.4e-07 57.8 94 46.8
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 8.3e-07 57.4 91 47.3
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 8.3e-07 57.4 76 47.4
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 8.3e-07 57.4 61 54.1
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 8.3e-07 57.4 98 39.8
A09p45850 Brassica napus HOM05D003360 ORTHO05D003759 1.1e-06 57.0 63 52.4
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.1e-06 57.0 43 67.4
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 1.1e-06 57.0 96 47.9
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 1.4e-06 56.6 49 61.2
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 1.4e-06 56.6 115 39.1
BcaB02g07817 Brassica carinata HOM05D003360 ORTHO05D003759 2.4e-06 55.8 56 57.1
Eucgr.A01509 Eucalyptus grandis HOM05D003360 ORTHO05D003759 2.4e-06 55.8 63 52.4
BcaB01g00342 Brassica carinata HOM05D003360 ORTHO05D003759 3.2e-06 55.5 57 56.1
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 3.2e-06 55.5 71 47.9
BcaC07g39642 Brassica carinata HOM05D003360 ORTHO05D003759 3.2e-06 55.5 57 56.1
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 3.2e-06 55.5 71 47.9
BolC8t50417H Brassica oleracea HOM05D003360 ORTHO05D003759 3.2e-06 55.5 57 56.1
Carub.0005s1925 Capsella rubella HOM05D003360 ORTHO05D003759 3.2e-06 55.5 63 50.8
Sed0002184 Sechium edule HOM05D003683 ORTHO05D004143 3.2e-06 55.5 46 65.2
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 3.2e-06 55.5 87 46.0
CARHR162650 Cardamine hirsuta HOM05D003360 ORTHO05D003759 4.1e-06 55.1 59 54.2
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 4.1e-06 55.1 97 42.3
Sc20g0006220 Simmondsia chinensis HOM05D003360 ORTHO05D003759 4.1e-06 55.1 47 66.0
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 5.4e-06 54.7 68 54.4
BcaC08g44595 Brassica carinata HOM05D003360 ORTHO05D003759 5.4e-06 54.7 56 55.4
C06p20670 Brassica napus HOM05D003360 ORTHO05D003759 5.4e-06 54.7 56 55.4
BolC6t37250H Brassica oleracea HOM05D003360 ORTHO05D003759 5.4e-06 54.7 56 55.4
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 5.4e-06 54.7 80 50.0
Hma1.2p1_0232F.1_g097830 Hydrangea macrophylla HOM05D003360 ORTHO05D003759 5.4e-06 54.7 47 66.0
Prupe.7G113000 Prunus persica HOM05D003360 ORTHO05D003759 5.4e-06 54.7 58 58.6
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 5.4e-06 54.7 91 47.3
BcaB01g00341 Brassica carinata HOM05D003360 ORTHO05D003759 7.1e-06 54.3 57 54.4
BraA09t40047Z Brassica rapa HOM05D003360 ORTHO05D003759 9.2e-06 53.9 57 54.4
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 9.2e-06 53.9 61 55.7
DCAR_013380 Daucus carota HOM05D003360 ORTHO05D003759 9.2e-06 53.9 50 60.0


User provided reference genes

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