Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 4.6e-204 714.5 418 100.0
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 1.0e-134 484.2 404 61.4
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 3.9e-134 482.3 407 66.3
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 1.5e-133 480.3 387 61.8
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 1.5e-133 480.3 387 63.6
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 2.5e-133 479.6 397 61.7
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 2.5e-133 479.6 387 62.0
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 3.3e-133 479.2 387 63.0
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 9.6e-133 477.6 387 63.3
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 2.8e-132 476.1 398 68.3
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 2.4e-131 473.0 388 60.6
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 3.1e-131 472.6 388 60.6
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 4.0e-131 472.2 388 60.6
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 6.9e-131 471.5 399 65.9
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 2.6e-130 469.5 414 72.0
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 1.3e-129 467.2 390 60.5
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 1.7e-129 466.8 369 64.0
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 1.0e-126 457.6 397 74.3
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 1.3e-124 450.7 387 59.4
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 3.6e-124 449.1 355 64.8
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 3.6e-124 449.1 388 58.5
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 1.8e-123 446.8 386 72.0
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 5.8e-122 441.8 367 60.8
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 1.7e-121 440.3 387 57.6
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 7.1e-120 434.9 387 56.8
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 1.0e-118 431.0 393 58.8
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 1.8e-118 430.3 386 57.3
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 3.4e-114 416.0 363 57.3
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 2.2e-113 413.3 387 55.0
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 2.9e-113 412.9 328 64.0
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 4.9e-113 412.1 387 68.2
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 8.4e-113 411.4 405 54.3
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 2.1e-111 406.8 384 54.2
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 2.7e-111 406.4 385 54.8
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 1.0e-110 404.4 250 77.2
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 3.9e-110 402.5 355 57.7
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 1.1e-109 401.0 368 54.6
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 1.5e-109 400.6 406 52.2
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 1.5e-109 400.6 395 53.2
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 7.4e-109 398.3 400 52.0
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 9.6e-109 397.9 355 57.5
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 1.6e-108 397.1 361 58.2
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 5.3e-107 392.1 250 76.0
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 6.9e-107 391.7 381 54.9
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 9.0e-107 391.3 370 54.6
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 4.5e-106 389.0 381 53.8
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 7.6e-106 388.3 456 48.9
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 1.7e-105 387.1 368 68.2
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 2.9e-105 386.3 399 58.4
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 3.8e-105 386.0 353 56.1
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 8.4e-105 384.8 381 52.5
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 1.2e-103 380.9 387 66.4
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 2.7e-103 379.8 369 52.3
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 4.6e-103 379.0 369 51.5
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 1.8e-102 377.1 246 73.2
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 8.7e-102 374.8 369 52.3
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 8.7e-102 374.8 355 54.1
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 1.9e-101 373.6 344 54.9
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 3.3e-101 372.9 395 48.4
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 4.3e-101 372.5 404 47.5
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 7.4e-101 371.7 379 52.8
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 4.8e-100 369.0 388 49.5
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 4.8e-100 369.0 415 47.7
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 6.3e-100 368.6 387 48.6
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 6.3e-100 368.6 387 49.1
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 8.2e-100 368.2 369 50.4
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 1.4e-99 367.5 387 49.4
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 4.1e-99 365.9 336 55.7
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 6.9e-99 365.2 387 49.1
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 9.0e-99 364.8 333 55.6
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 3.4e-98 362.8 250 70.4
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 1.7e-97 360.5 352 61.4
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 3.8e-97 359.4 387 63.3
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 1.4e-96 357.5 320 56.6
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 2.5e-96 356.7 246 69.5
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 3.2e-96 356.3 369 50.1
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 9.3e-96 354.8 323 55.4
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 3.6e-95 352.8 328 57.3
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 4.6e-95 352.4 336 53.6
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 7.9e-95 351.7 357 50.7
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 1.0e-94 351.3 371 48.5
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 2.3e-94 350.1 251 67.3
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 8.7e-94 348.2 396 46.2
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 1.5e-93 347.4 250 68.4
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 7.4e-93 345.1 355 66.8
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 8.2e-92 341.7 348 51.1
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 1.1e-88 331.3 369 46.3
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 2.7e-87 326.6 352 58.2
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 3.0e-86 323.2 332 50.6
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 1.3e-84 317.8 355 50.7
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 4.1e-83 312.8 327 51.1
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 5.3e-83 312.4 248 62.9
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 1.5e-82 310.8 218 67.4
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 5.9e-82 308.9 368 45.9
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 2.5e-80 303.5 251 58.6
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 5.2e-78 295.8 404 44.1
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 4.4e-77 292.7 251 56.6
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 1.1e-75 288.1 179 77.1
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 2.2e-73 280.4 250 56.0
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 2.5e-72 276.9 205 64.9
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 7.5e-69 265.4 254 52.4
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 1.4e-67 261.2 400 41.5
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 8.0e-47 192.2 150 62.0
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 1.4e-43 181.4 167 54.5
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 4.1e-43 179.9 249 59.4
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 1.4e-38 164.9 232 39.2
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 2.9e-36 157.1 167 48.5
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 1.6e-34 151.4 182 47.8
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 4.3e-32 143.3 198 40.9
Sabra06G0059400 Salix brachista HOM05D007036 ORTHO05D008885 4.4e-21 106.7 175 37.7
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 1.7e-20 104.8 238 30.7
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 7.1e-19 99.4 174 36.2
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 7.3e-16 89.4 242 28.9
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 1.5e-13 81.6 182 33.0
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 2.0e-13 81.3 190 32.6
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 9.9e-13 79.0 182 32.4
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 1.3e-12 78.6 192 31.8
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 2.4e-11 74.3 194 32.0
ECA248G1461 Erigeron canadensis HOM05D007897 ORTHO05D010061 3.2e-11 73.9 202 31.2
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 9.3e-11 72.4 192 30.2
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 2.7e-10 70.9 187 30.5
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 3.5e-10 70.5 179 29.6
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 6.0e-10 69.7 199 28.6
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 1.7e-09 68.2 198 29.3
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 1.7e-09 68.2 198 29.3
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 1.7e-09 68.2 199 31.2
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 2.3e-09 67.8 153 32.0
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 2.3e-09 67.8 196 28.1
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 3.0e-09 67.4 184 31.0
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 3.9e-09 67.0 189 27.5
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 6.6e-09 66.2 184 30.4
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 1.5e-08 65.1 185 29.7
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 1.9e-08 64.7 168 29.8
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 5.6e-08 63.2 154 31.2
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 2.1e-07 61.2 169 29.0
Medtr6g034745 Medicago truncatula HOM05D007036 ORTHO05D008885 2.8e-07 60.8 47 53.2


User provided reference genes

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