Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 1.4e-179 632.9 319 100.0
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 2.1e-140 502.7 320 80.6
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 2.6e-138 495.7 315 78.1
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 7.5e-138 494.2 310 79.7
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 2.9e-137 492.3 313 78.3
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 3.7e-137 491.9 320 78.8
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 1.9e-136 489.6 311 77.8
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 2.4e-136 489.2 314 77.1
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 9.2e-136 487.3 316 76.9
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 3.5e-135 485.3 314 78.0
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 1.3e-134 483.4 313 77.6
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 2.3e-134 482.6 313 76.0
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 3.0e-134 482.3 317 77.9
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 3.0e-134 482.3 311 77.2
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 1.5e-133 479.9 322 75.2
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 3.3e-133 478.8 353 70.5
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 9.5e-133 477.2 319 75.5
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 9.5e-133 477.2 317 77.0
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.2e-132 476.9 317 76.7
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.6e-132 476.5 317 77.0
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.6e-132 476.5 317 77.3
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 2.1e-132 476.1 317 77.0
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.1e-132 476.1 317 76.7
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 2.8e-132 475.7 319 75.2
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 4.7e-132 474.9 314 77.1
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 2.3e-131 472.6 312 77.9
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 2.3e-131 472.6 319 74.3
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 5.2e-131 471.5 316 74.7
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 6.8e-131 471.1 312 77.6
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 9.9e-130 467.2 315 73.0
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 1.3e-129 466.8 319 75.9
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 3.7e-129 465.3 317 75.7
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 3.7e-129 465.3 319 72.4
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 6.4e-129 464.5 313 75.4
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 1.1e-128 463.8 312 76.9
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 1.4e-128 463.4 317 75.1
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 3.2e-128 462.2 314 72.6
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 9.2e-128 460.7 313 73.5
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 1.2e-127 460.3 313 73.5
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 2.1e-127 459.5 311 72.3
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 3.5e-127 458.8 314 72.6
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 3.5e-127 458.8 315 70.8
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 6.0e-127 458.0 314 72.6
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 1.0e-126 457.2 314 72.6
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 1.7e-126 456.4 314 73.6
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 3.0e-126 455.7 317 74.1
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 3.0e-126 455.7 313 71.6
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 3.9e-126 455.3 317 72.6
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 1.9e-125 453.0 318 73.3
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 2.5e-125 452.6 313 73.2
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 2.5e-125 452.6 313 70.6
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 4.3e-125 451.8 313 74.1
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 7.3e-125 451.1 314 71.7
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 7.3e-125 451.1 318 70.1
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 1.2e-124 450.3 314 71.3
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 2.1e-124 449.5 315 71.7
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 3.6e-124 448.7 322 70.5
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 3.6e-124 448.7 320 70.3
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 4.7e-124 448.4 311 71.4
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 6.2e-124 448.0 322 70.2
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 8.1e-124 447.6 316 69.9
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 1.8e-123 446.4 315 69.8
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 4.0e-123 445.3 316 70.9
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 6.8e-123 444.5 315 69.5
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 1.2e-122 443.7 320 69.1
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 2.6e-122 442.6 320 68.8
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 2.6e-122 442.6 317 70.0
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 2.6e-122 442.6 319 68.7
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 4.4e-122 441.8 338 67.2
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 5.8e-122 441.4 320 68.1
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 5.8e-122 441.4 320 68.8
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 5.8e-122 441.4 316 69.0
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 7.6e-122 441.0 315 70.5
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 1.3e-121 440.3 312 72.1
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 2.2e-121 439.5 320 68.4
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 2.2e-121 439.5 315 69.2
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 2.4e-120 436.0 325 67.7
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 3.2e-120 435.6 316 69.0
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 4.2e-120 435.3 373 61.1
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 7.1e-120 434.5 317 67.5
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 9.3e-120 434.1 323 68.7
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 1.2e-119 433.7 315 69.8
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 2.7e-119 432.6 332 66.3
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 3.5e-119 432.2 311 69.5
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 7.8e-119 431.0 316 68.4
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 1.0e-118 430.6 339 64.9
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 6.6e-118 427.9 315 68.6
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 8.7e-118 427.6 306 72.9
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 4.3e-117 425.2 280 74.3
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 1.3e-116 423.7 315 66.3
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 2.0e-114 416.4 261 80.1
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 9.9e-114 414.1 317 65.6
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 7.1e-112 407.9 310 64.5
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 1.3e-110 403.7 298 68.8
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 5.1e-110 401.7 279 71.7
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 5.1e-110 401.7 315 65.1
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 8.7e-110 401.0 283 70.7
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 2.0e-106 389.8 286 68.5
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 7.6e-106 387.9 242 81.8
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 1.3e-102 377.1 239 79.1
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 2.4e-99 366.3 230 81.3
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 1.0e-97 360.9 239 73.2
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 5.5e-96 355.1 231 72.7
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 2.4e-91 339.7 316 55.7
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 4.1e-91 339.0 239 73.6
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 7.6e-90 334.7 316 54.1
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 3.2e-88 329.3 202 81.7
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 3.4e-82 309.3 242 69.8
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 6.5e-81 305.1 235 63.8
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 1.9e-80 303.5 241 64.7
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 7.2e-80 301.6 310 50.6
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.6e-79 300.4 239 67.4
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 2.8e-68 263.1 188 69.1
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 1.1e-67 261.2 304 46.7
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 1.1e-64 251.1 192 65.6
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 4.4e-61 239.2 180 69.4
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 1.3e-52 211.1 131 80.2
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 1.0e-49 201.4 321 41.4
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 8.0e-47 191.8 310 39.0
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 2.1e-39 167.2 117 72.6
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 2.8e-39 166.8 323 38.1
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 4.4e-37 159.5 108 75.9
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 7.5e-37 158.7 124 62.9
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 9.8e-37 158.3 112 71.4
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 9.8e-37 158.3 112 71.4
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 9.8e-37 158.3 112 71.4
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 1.2e-34 151.4 105 76.2
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 2.0e-34 150.6 130 59.2
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 6.4e-28 129.0 90 67.8
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 5.4e-27 125.9 82 70.7
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 1.3e-25 121.3 77 81.8
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 1.5e-24 117.9 82 75.6
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 1.0e-17 95.1 77 64.9
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 4.3e-16 89.7 84 59.5
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 1.4e-14 84.7 54 70.4
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 4.0e-14 83.2 57 63.2
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 3.5e-10 70.1 62 61.3
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 3.5e-10 70.1 62 61.3
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 1.6e-07 61.2 57 56.1


User provided reference genes

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