Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G254801 Manihot esculenta HOM05D007199 ORTHO05D007257 3.2e-141 505.4 308 100.0
Manes.05G019000 Manihot esculenta HOM05D007199 ORTHO05D007257 3.7e-97 359.0 303 74.3
Potri.014G102600 Populus trichocarpa HOM05D007199 ORTHO05D007257 1.4e-69 267.3 301 60.5
Potri.002G175300 Populus trichocarpa HOM05D007199 ORTHO05D007257 1.0e-59 234.6 274 61.7
Thecc.01G336800 Theobroma cacao HOM05D007199 ORTHO05D007257 1.1e-58 231.1 306 55.9
QL08p046296 Quercus lobata HOM05D007199 ORTHO05D007257 2.6e-58 229.9 310 51.0
Duzib138G1694 Durio zibethinus HOM05D007199 ORTHO05D007257 4.8e-57 225.7 307 56.7
Ciclev10024292m.g Citrus clementina HOM05D007199 ORTHO05D007257 5.5e-53 212.2 301 45.5
Atru.chr5.734 Acer truncatum HOM05D007199 ORTHO05D007257 1.2e-52 211.1 304 54.6
Haze_15700 Corylus avellana HOM05D007199 ORTHO05D007257 1.2e-52 211.1 316 44.6
TWI14G0585 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 1.6e-52 210.7 309 49.8
CiPaw.02G043300 Carya illinoinensis HOM05D007199 ORTHO05D007257 8.0e-52 208.4 303 43.2
GSVIVG01027402001 Vitis vinifera HOM05D007199 ORTHO05D007257 1.0e-51 208.0 301 53.8
Duzib133G0933 Durio zibethinus HOM05D007199 ORTHO05D007257 1.8e-51 207.2 331 47.4
Gohir.A11G099400 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.3e-49 201.1 307 50.2
Gohir.D11G103900 Gossypium hirsutum HOM05D007199 ORTHO05D007257 2.2e-49 200.3 304 50.0
Gorai.007G111200 Gossypium raimondii HOM05D007199 ORTHO05D007257 2.2e-49 200.3 307 49.2
Prupe.2G194000 Prunus persica HOM05D007199 ORTHO05D007257 4.5e-47 192.6 315 45.1
Cpa.g.sc144.10 Carica papaya HOM05D007199 ORTHO05D007257 3.8e-46 189.5 274 53.6
VMungo0331G0932 Vigna mungo HOM05D007199 ORTHO05D007257 5.0e-46 189.1 304 40.5
Dinv32625 Davidia involucrata HOM05D007199 ORTHO05D007257 8.5e-46 188.3 304 44.7
Phvul.010G116850 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 2.5e-45 186.8 305 41.0
Phvul.010G116900 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 2.5e-45 186.8 305 41.0
Glyma.07G052500 Glycine max HOM05D007199 ORTHO05D007257 7.2e-45 185.3 301 41.9
TWI23G0381 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 7.2e-45 185.3 302 45.7
Lj3g0002992 Lotus japonicus HOM05D007199 ORTHO05D007257 3.6e-44 183.0 327 39.4
CiPaw.01G079500 Carya illinoinensis HOM05D007199 ORTHO05D007257 1.4e-43 181.0 316 45.3
Glyma.16G021400 Glycine max HOM05D007199 ORTHO05D007257 4.4e-42 176.0 306 39.2
Dinv34240 Davidia involucrata HOM05D007199 ORTHO05D007257 1.3e-41 174.5 320 44.4
Lalb_Chr15g0076391 Lupinus albus HOM05D007199 ORTHO05D007257 6.3e-41 172.2 300 38.3
RcHm_v2.0_Chr1g0360641 Rosa chinensis HOM05D007199 ORTHO05D007257 6.3e-41 172.2 312 39.4
MD07G1155200 Malus domestica HOM05D007199 ORTHO05D007257 2.3e-38 163.7 326 40.5
TAR629G0242 Trochodendron aralioides HOM05D007199 ORTHO05D007257 2.9e-38 163.3 276 42.0
Gohir.A08G124000 Gossypium hirsutum HOM05D007199 ORTHO05D007257 5.0e-38 162.5 275 44.4
Gorai.004G150000 Gossypium raimondii HOM05D007199 ORTHO05D007257 8.6e-38 161.8 275 43.3
Gohir.D08G145100 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.5e-37 161.0 275 42.9
FvH4_7g17280 Fragaria vesca HOM05D007199 ORTHO05D007257 4.2e-37 159.5 307 37.8
Nn1g00376 Nelumbo nucifera HOM05D007199 ORTHO05D007257 7.2e-37 158.7 321 39.9
FAN06G3172 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.2e-36 157.9 307 37.5
TPR.G15900 Trifolium pratense HOM05D007199 ORTHO05D007257 1.2e-36 157.9 274 40.5
Lalb_Chr10g0100741 Lupinus albus HOM05D007199 ORTHO05D007257 3.6e-36 156.4 286 36.4
MD00G1035800 Malus domestica HOM05D007199 ORTHO05D007257 6.1e-36 155.6 324 37.7
CsaV3_6G008960 Cucumis sativus L. HOM05D007199 ORTHO05D007257 8.0e-36 155.2 306 46.1
Medtr8g027100 Medicago truncatula HOM05D007199 ORTHO05D007257 8.0e-36 155.2 284 38.7
Sed0010537 Sechium edule HOM05D007199 ORTHO05D007257 8.0e-36 155.2 305 45.6
FAN10G2445 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.0e-35 154.8 314 36.9
FAN10G3440 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.0e-35 154.8 314 36.9
Sabra14G0075600 Salix brachista HOM05D007199 ORTHO05D007257 1.8e-35 154.1 299 39.8
FAN03G0194 Fragaria x ananassa HOM05D007199 ORTHO05D007257 3.0e-35 153.3 314 36.6
MELO3C022248.2 Cucumis melo HOM05D007199 ORTHO05D007257 8.9e-35 151.8 306 44.1
Psat4g216200 Pisum sativum HOM05D007199 ORTHO05D007257 2.0e-34 150.6 292 38.7
Eucgr.E00024 Eucalyptus grandis HOM05D007199 ORTHO05D007257 9.8e-34 148.3 312 35.9
FAN01G2057 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.3e-33 147.9 314 36.0
TAR375G0146 Trochodendron aralioides HOM05D007199 ORTHO05D007257 2.7e-31 140.2 311 38.9
CSS0043385 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 4.5e-31 139.4 308 44.5
Hma1.2p1_0309F.1_g120450 Hydrangea macrophylla HOM05D007199 ORTHO05D007257 5.0e-30 136.0 319 45.5
Ca_23498_v3 Cicer arietinum L. HOM05D007199 ORTHO05D007257 1.5e-29 134.4 305 36.7
Actinidia28100 Actinidia chinensis HOM05D007199 ORTHO05D007257 1.9e-29 134.0 298 39.6
ClCG06G002790 Citrullus lanatus HOM05D007199 ORTHO05D007257 1.2e-28 131.3 278 41.4
CSS0044672 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 3.1e-27 126.7 253 44.7
MSTRG.17369 Avicennia marina HOM05D007199 ORTHO05D007257 1.2e-26 124.8 300 40.7
THA.LOC104802086 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 1.5e-26 124.4 306 35.9
CANSAT56G1498 Cannabis sativa HOM05D007199 ORTHO05D007257 1.7e-25 120.9 276 42.8
COL.COLO4_06259 Corchorus olitorius HOM05D007199 ORTHO05D007257 4.1e-24 116.3 115 59.1
Gohir.A12G114200 Gossypium hirsutum HOM05D007199 ORTHO05D007257 4.1e-24 116.3 264 36.0
THA.LOC104817388 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 9.2e-24 115.2 319 32.0
Rhsim01G0176600 Rhododendron simsii HOM05D007199 ORTHO05D007257 1.3e-22 111.3 310 32.3
Nitab4.5_0002638g0020 Nicotiana tabacum HOM05D007199 ORTHO05D007257 1.7e-22 110.9 289 32.2
arahy.Tifrunner.gnm1.ann1.GEK5Z0 Arachis hypogaea HOM05D007199 ORTHO05D007257 1.1e-21 108.2 240 39.6
PSO782G1188 Papaver somniferum HOM05D007199 ORTHO05D007257 2.5e-21 107.1 301 31.2
arahy.Tifrunner.gnm1.ann1.WJU08E Arachis hypogaea HOM05D007199 ORTHO05D007257 4.3e-21 106.3 242 40.5
PGSC0003DMG400005529 Solanum tuberosum HOM05D007199 ORTHO05D007257 1.6e-20 104.4 307 35.2
arahy.Tifrunner.gnm1.ann1.P1IKWH Arachis hypogaea HOM05D007199 ORTHO05D007257 2.8e-20 103.6 297 41.4
arahy.Tifrunner.gnm1.ann1.A7IBVM Arachis hypogaea HOM05D007199 ORTHO05D007257 4.7e-20 102.8 312 29.5
Solyc10g009320.3 Solanum lycopersicum HOM05D007199 ORTHO05D007257 8.0e-20 102.1 305 32.8
Sopen10g005110 Solanum pennellii HOM05D007199 ORTHO05D007257 1.4e-19 101.3 307 33.2
A05p01150 Brassica napus HOM05D012720 ORTHO05D007257 4.0e-19 99.8 335 31.3
Aa31LG1G28040 Aethionema arabicum HOM05D007199 ORTHO05D007257 1.2e-18 98.2 296 27.7
BolC4t21784H Brassica oleracea HOM05D012720 ORTHO05D007257 1.5e-18 97.8 338 32.2
BraA05t19115Z Brassica rapa HOM05D012720 ORTHO05D007257 2.6e-18 97.1 334 30.8
Lj9C602T4 Lonicera japonica HOM05D007199 ORTHO05D007257 9.8e-18 95.1 262 32.1
Actinidia25657 Actinidia chinensis HOM05D007199 ORTHO05D007257 3.7e-17 93.2 98 53.1
CARHR141980 Cardamine hirsuta HOM05D012720 ORTHO05D007257 3.7e-17 93.2 297 31.0
Oeu022158.1 Olea europaea HOM05D007199 ORTHO05D007257 3.7e-17 93.2 238 38.2
Peaxi162Scf00087g00199 Petunia axillaris HOM05D007199 ORTHO05D007257 1.9e-16 90.9 285 31.6
DCAR_002988 Daucus carota HOM05D007199 ORTHO05D007257 5.4e-16 89.4 262 33.2
Thhalv10001576m.g Eutrema salsugineum HOM05D012720 ORTHO05D007257 5.4e-16 89.4 300 32.7
Sopen01g040020 Solanum pennellii HOM05D007199 ORTHO05D007257 9.2e-16 88.6 283 31.8
BcaB01g03200 Brassica carinata HOM05D012720 ORTHO05D007257 2.7e-15 87.0 302 31.1
HanXRQChr04g0120361 Helianthus annuus HOM05D007199 ORTHO05D007257 2.7e-15 87.0 284 31.7
vmacro12588 Vaccinium macrocarpon HOM05D007199 ORTHO05D007257 2.7e-15 87.0 169 39.6
BcaC02g12658 Brassica carinata HOM05D012720 ORTHO05D007257 6.0e-15 85.9 307 31.6
Solyc01g096260.4 Solanum lycopersicum HOM05D007199 ORTHO05D007257 7.8e-15 85.5 284 31.3
Gorai.008G127500 Gossypium raimondii HOM05D007199 ORTHO05D007257 1.0e-14 85.1 81 55.6
CDE09G0027 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 3.0e-14 83.6 300 29.7
AT2G46640 Arabidopsis thaliana HOM05D012720 ORTHO05D007257 3.9e-14 83.2 303 30.4
CDE11G0583 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 1.5e-13 81.3 297 29.3
PGSC0003DMG400000126 Solanum tuberosum HOM05D007199 ORTHO05D007257 1.5e-13 81.3 310 29.4
ATR0620G133 Amborella trichopoda HOM05D007199 ORTHO05D007257 1.9e-13 80.9 307 30.6
AUR62008640 Chenopodium quinoa HOM05D021513 ORTHO05D007257 2.5e-13 80.5 271 30.3
AL4G46070 Arabidopsis lyrata HOM05D012720 ORTHO05D007257 3.3e-13 80.1 285 27.7
Nitab4.5_0014168g0010 Nicotiana tabacum HOM05D007199 ORTHO05D007257 4.3e-13 79.7 262 32.1
ECA236G3069 Erigeron canadensis HOM05D007199 ORTHO05D007257 5.6e-13 79.3 310 28.1
C04p01310 Brassica napus HOM05D012720 ORTHO05D007257 7.3e-13 79.0 318 31.4
Lsat_1_v5_gn_4_32721 Lactuca sativa HOM05D007199 ORTHO05D007257 9.5e-13 78.6 280 27.5
Aqoxy5G04262 Aquilegia oxysepala HOM05D007199 ORTHO05D007257 2.8e-12 77.0 303 28.7
Carub.0004s2935 Capsella rubella HOM05D012720 ORTHO05D007257 3.6e-12 76.6 276 31.5
PGR042G0368 Punica granatum HOM05D007199 ORTHO05D007257 3.6e-12 76.6 391 34.5
BcaC02g07047 Brassica carinata HOM05D012720 ORTHO05D007257 3.1e-11 73.6 284 31.7
MBI12_g13712_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 4.0e-11 73.2 281 28.5
Sp4g28690 Schrenkiella parvula HOM05D012720 ORTHO05D007257 5.2e-11 72.8 334 28.7
AUR62033124 Chenopodium quinoa HOM05D021513 ORTHO05D007257 6.8e-11 72.4 233 29.2
DCAR_006984 Daucus carota HOM05D007199 ORTHO05D007257 8.9e-11 72.0 314 29.3
Sc23g0001940 Simmondsia chinensis HOM05D007199 ORTHO05D007257 4.4e-10 69.7 308 34.7
Ah.15g093270 Amaranthus hybridus HOM05D021513 ORTHO05D007257 1.3e-09 68.2 247 33.6
Nitab4.5_0000917g0050 Nicotiana tabacum HOM05D007199 ORTHO05D007257 1.7e-09 67.8 207 30.4
EL10Ac7g17504 Beta vulgaris HOM05D021513 ORTHO05D007257 2.2e-09 67.4 273 34.8
SalBow5G5634 Salvia bowleyana HOM05D007199 ORTHO05D007257 2.4e-08 63.9 272 26.1
HanXRQChr16g0524641 Helianthus annuus HOM05D007199 ORTHO05D007257 4.1e-08 63.2 275 29.1
Cc02_g39760 Coffea canephora HOM05D007199 ORTHO05D007257 2.7e-07 60.5 118 40.7
Peaxi162Scf00767g00113 Petunia axillaris HOM05D007199 ORTHO05D007257 2.7e-07 60.5 236 28.0
Nitab4.5_0000307g0150 Nicotiana tabacum HOM05D007199 ORTHO05D007257 4.6e-07 59.7 134 36.6
MBI04_g33415_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 5.1e-06 56.2 51 54.9


User provided reference genes

Program Settings