Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 0.0e+00 1486.9 738 100.0
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 0.0e+00 1181.0 744 77.6
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 0.0e+00 1151.3 780 72.6
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 0.0e+00 1078.9 768 69.9
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 2.3e-307 1058.5 739 70.5
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 5.2e-307 1057.4 751 69.5
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 2.7e-303 1045.0 749 68.5
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 4.5e-303 1044.3 739 69.8
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 3.8e-302 1041.2 738 70.5
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 1.0e-299 1033.1 747 68.5
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 8.8e-299 1030.0 745 69.3
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 8.3e-297 1023.5 743 69.7
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 5.7e-290 1000.7 749 65.6
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 4.1e-288 994.6 775 66.5
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 2.3e-286 988.8 741 67.5
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 6.6e-286 987.3 786 64.6
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 1.5e-285 986.1 751 64.8
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 1.5e-282 976.1 758 64.4
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 1.3e-281 973.0 742 67.5
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 1.7e-281 972.6 747 66.1
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 9.2e-280 966.8 757 64.6
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 6.6e-278 960.7 745 65.9
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 9.5e-277 956.8 744 63.4
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 2.8e-276 955.3 741 66.1
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 8.0e-276 953.7 760 63.0
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.8e-275 952.6 741 65.9
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 4.0e-275 951.4 758 63.1
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 8.9e-275 950.3 700 66.6
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 9.8e-274 946.8 739 63.6
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 2.2e-273 945.7 747 64.3
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.1e-272 943.3 680 70.3
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 3.2e-272 941.8 755 64.0
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 2.0e-271 939.1 741 63.4
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 2.7e-271 938.7 696 68.1
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 7.8e-271 937.2 739 62.8
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 5.0e-270 934.5 753 61.8
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 5.0e-270 934.5 763 62.9
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.1e-269 933.3 746 62.9
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 3.3e-269 931.8 741 61.7
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 9.5e-269 930.2 744 62.2
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 1.2e-268 929.9 741 62.3
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 1.2e-268 929.9 739 63.3
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 4.0e-267 924.9 746 62.9
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 1.2e-266 923.3 742 62.3
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 3.4e-266 921.8 755 61.1
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 5.4e-264 914.4 745 60.8
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 7.1e-264 914.1 746 61.9
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.6e-263 912.9 754 60.7
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 4.6e-263 911.4 748 60.4
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 7.8e-263 910.6 741 60.7
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 6.6e-262 907.5 749 61.4
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.1e-261 906.7 789 59.4
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 2.1e-260 902.5 778 60.3
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 1.1e-259 900.2 761 61.8
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 1.1e-259 900.2 743 61.4
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 1.8e-259 899.4 758 60.2
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 4.0e-259 898.3 744 61.7
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 6.8e-259 897.5 744 59.7
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 1.2e-258 896.7 744 62.1
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 2.6e-258 895.6 747 60.1
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 5.8e-258 894.4 742 62.9
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 4.9e-257 891.3 738 62.2
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.9e-256 889.4 758 60.2
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 1.9e-256 889.4 747 60.9
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 4.6e-255 884.8 748 61.2
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 6.0e-255 884.4 737 61.9
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 2.3e-254 882.5 741 60.1
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 6.6e-254 880.9 746 61.5
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 1.1e-253 880.2 745 61.3
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 9.6e-253 877.1 740 58.6
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 1.2e-252 876.7 755 59.7
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.6e-252 876.3 742 61.1
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 1.4e-251 873.2 740 60.8
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 1.8e-251 872.8 740 61.2
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 2.0e-250 869.4 745 58.8
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 2.0e-250 869.4 754 58.9
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 7.6e-250 867.5 751 59.1
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 7.6e-250 867.5 727 60.2
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 1.7e-249 866.3 737 59.7
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 5.4e-248 861.3 740 60.0
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 7.1e-248 860.9 740 60.7
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.2e-247 860.1 737 60.2
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 2.1e-247 859.4 738 59.1
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.7e-246 856.3 746 59.1
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 1.1e-245 853.6 746 60.3
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 1.5e-245 853.2 747 57.6
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.5e-245 853.2 752 57.8
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 9.6e-245 850.5 642 65.7
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 3.6e-244 848.6 747 58.0
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 6.4e-241 837.8 741 59.1
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 7.1e-240 834.3 741 58.3
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 7.9e-239 830.9 736 57.9
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 1.3e-238 830.1 743 58.3
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 5.1e-238 828.2 744 58.2
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 5.1e-238 828.2 744 58.2
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 8.7e-238 827.4 741 58.3
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 2.5e-237 825.9 773 54.6
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 2.8e-236 822.4 740 57.8
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 1.1e-235 820.5 720 58.1
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 3.2e-232 808.9 741 55.1
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 2.7e-231 805.8 643 62.5
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.1e-229 800.4 603 67.3
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 3.3e-229 798.9 739 57.0
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 5.6e-229 798.1 741 54.8
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 4.8e-228 795.0 646 61.0
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 5.5e-224 781.6 754 56.1
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 3.4e-210 735.7 710 54.5
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 4.5e-210 735.3 672 56.7
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 1.2e-207 727.2 603 58.9
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 2.6e-202 709.5 784 48.3
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 3.2e-200 702.6 513 65.7
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 4.2e-200 702.2 666 55.4
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 4.2e-200 702.2 772 48.6
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 4.8e-196 688.7 813 47.4
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 1.6e-194 683.7 733 48.6
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 2.8e-188 662.9 562 59.4
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 5.0e-185 652.1 871 44.8
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 5.0e-185 652.1 526 60.5
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 1.9e-184 650.2 785 46.9
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.7e-180 637.1 746 46.6
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 6.1e-175 618.6 691 48.2
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 4.0e-166 589.3 721 46.9
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 5.6e-160 568.9 645 48.7
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 3.2e-155 553.1 712 42.1
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 2.0e-149 533.9 385 67.5
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.0e-149 533.9 342 77.5
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 1.6e-138 497.7 343 71.7
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 1.4e-134 484.6 505 51.1
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 3.5e-130 469.9 720 38.1
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 3.8e-124 449.9 380 60.0
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 1.6e-106 391.3 319 60.2
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 5.1e-105 386.3 349 57.9
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 5.7e-104 382.9 620 37.3
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 4.2e-99 366.7 793 31.3
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 4.2e-91 340.1 815 29.6
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 3.1e-86 323.9 352 48.0
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 3.4e-85 320.5 454 39.4
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 2.0e-80 304.7 369 46.1
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 3.3e-80 303.9 294 52.4
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 9.4e-75 285.8 290 51.0
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 8.8e-65 252.7 513 31.0
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 5.5e-59 233.4 176 69.9
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 5.2e-57 226.9 182 64.3
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 7.5e-56 223.0 199 57.3
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 9.2e-54 216.1 211 53.1
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 4.6e-37 160.6 814 22.7
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.7e-29 134.8 142 49.3
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.2e-21 109.4 111 52.3
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 1.3e-20 105.9 113 50.4
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 1.5e-19 102.4 102 59.8
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 9.3e-14 83.2 93 47.3
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 3.3e-11 74.7 63 47.6
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 4.8e-10 70.9 64 56.2
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 3.1e-09 68.2 44 61.4
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 2.6e-08 65.1 57 56.1
CBR_g17143 Chara braunii HOM05D004502 ORTHO05D005579 4.2e-06 57.8 126 30.2


User provided reference genes

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