Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 2256.5 1124 100.0
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1993.4 1117 87.9
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1978.4 1118 88.4
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1971.8 1124 86.3
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1965.3 1123 86.0
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1965.3 1122 86.4
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1964.9 1124 86.2
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1962.6 1123 86.2
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1959.1 1123 86.7
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1958.3 1123 85.8
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1955.3 1131 85.6
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1952.6 1123 85.8
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1946.4 1123 85.4
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1945.6 1120 85.4
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1936.0 1123 84.6
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1933.7 1184 82.3
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1930.6 1123 85.2
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1929.8 1123 84.8
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1924.4 1123 84.5
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1917.1 1096 86.2
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1916.4 1123 84.4
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1915.6 1121 84.2
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1913.7 1123 83.6
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1912.9 1124 85.0
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1911.3 1122 84.1
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1909.8 1118 84.3
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1907.9 1122 84.0
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1907.5 1125 83.7
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1907.1 1132 83.4
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1901.3 1123 82.8
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1899.8 1126 83.3
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1899.8 1124 83.5
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1899.8 1124 84.2
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1899.8 1123 84.1
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1899.4 1132 83.5
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1892.9 1126 82.9
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1890.9 1124 83.2
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1886.3 1127 82.0
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1885.2 1127 82.2
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1884.4 1127 81.8
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1883.2 1125 83.0
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1878.2 1119 82.8
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1877.1 1124 83.0
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1869.0 1149 80.6
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1865.5 1121 82.1
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1862.4 1117 82.9
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1859.3 1123 81.8
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1856.3 1077 85.6
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1854.7 1127 81.2
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1851.6 1124 81.9
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1846.2 1125 80.9
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1837.0 1124 80.2
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1835.8 1122 80.2
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1832.8 1128 80.1
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1827.8 1162 78.6
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1825.8 1121 80.0
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1823.9 1124 81.0
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1819.7 1247 76.1
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1818.5 1196 76.3
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1814.7 1073 83.5
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1801.6 1126 78.8
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1800.0 1190 76.0
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1797.7 1036 85.2
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1792.7 1123 79.3
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1791.2 1079 81.7
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1781.5 1116 78.4
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1779.2 1124 77.7
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1776.5 1119 78.0
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1770.0 1123 79.0
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1764.2 1316 70.4
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1751.9 1120 77.6
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1749.9 1124 76.7
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1741.5 1118 76.7
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1735.3 1117 76.6
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1732.6 1119 77.3
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1731.8 1152 76.8
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1722.2 1117 76.2
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1721.4 1117 76.2
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1709.5 1123 75.4
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1701.4 1120 75.3
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1701.4 1120 75.3
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1683.7 1121 74.8
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1682.9 1121 74.8
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1667.5 1126 74.1
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1662.9 1163 73.6
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1637.5 952 85.2
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1636.3 1140 72.1
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1617.4 1148 71.5
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1579.7 1118 71.3
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1570.8 1132 70.3
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1558.9 1133 69.3
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1549.3 1133 69.3
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1548.1 1161 69.4
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1518.8 1106 70.5
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1492.6 841 87.3
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1485.7 837 87.3
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1473.4 981 76.9
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1471.1 870 83.1
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1409.0 856 80.0
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1323.5 1126 62.3
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1276.5 783 80.1
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1265.8 819 75.5
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1228.4 683 88.3
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1145.6 1137 52.3
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 0.0e+00 1142.1 1527 45.8
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 0.0e+00 1076.2 1123 51.1
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 9.6e-305 1050.4 1144 49.0
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 6.3e-288 994.6 1146 46.7
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 6.5e-277 958.0 523 90.6
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 6.3e-272 941.4 668 69.3
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 7.7e-270 934.5 675 71.3
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 1.9e-268 929.9 1376 39.5
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.6e-267 926.8 584 80.8
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.6e-249 866.3 737 60.8
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 1.6e-211 740.7 617 62.7
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 2.4e-207 726.9 428 84.3
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 2.5e-204 716.8 451 76.7
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 9.6e-188 661.8 420 73.1
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 3.4e-185 653.3 591 54.7
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 2.7e-158 563.9 451 65.4
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 3.6e-142 510.4 312 80.1
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.7e-137 494.2 371 72.5
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 1.2e-126 458.8 331 75.2
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 1.0e-112 412.5 1104 30.5
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 3.2e-90 337.8 770 31.9
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 8.1e-86 323.2 1460 22.5
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 4.2e-82 310.8 294 57.5
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.3e-80 305.8 229 72.5
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 9.6e-79 299.7 180 78.9
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 2.1e-73 282.0 198 78.8
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 4.6e-73 280.8 189 69.8
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 4.8e-70 270.8 294 51.7
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 1.1e-66 259.6 186 67.2
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 2.5e-63 248.4 206 59.7
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 5.0e-59 234.2 212 59.4
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 7.1e-58 230.3 319 38.6
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.9e-55 222.2 595 33.1
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 5.0e-51 207.6 212 59.4
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 4.6e-49 201.1 267 43.8
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 1.0e-48 199.9 212 56.6
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 1.1e-45 189.9 348 41.4
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 1.0e-43 183.3 169 56.8
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 6.7e-40 170.6 183 54.1
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 7.0e-37 160.6 710 23.9
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 1.0e-32 146.7 85 85.9
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 6.7e-32 144.1 88 83.0
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 3.8e-27 128.3 85 63.5
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 3.8e-27 128.3 85 76.5
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 5.0e-27 127.9 164 48.8
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.1e-26 126.7 164 47.0
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 1.2e-23 116.7 65 80.0
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 4.8e-22 111.3 74 73.0
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 1.1e-21 110.2 161 41.0
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 8.5e-19 100.5 67 65.7
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 7.2e-18 97.4 60 75.0
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 6.1e-17 94.4 80 62.5
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 1.0e-16 93.6 95 54.7
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 5.2e-16 91.3 64 67.2
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 5.2e-16 91.3 69 68.1
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 7.5e-15 87.4 59 76.3
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 3.7e-14 85.1 56 71.4
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 7.0e-13 80.9 56 66.1
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 9.1e-13 80.5 45 77.8
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 5.0e-11 74.7 49 69.4
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.5e-10 72.4 43 74.4
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 3.3e-10 72.0 49 73.5
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 6.1e-09 67.8 34 79.4
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 8.0e-09 67.4 71 52.1
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 3.4e-07 62.0 41 65.9
Rhsim06G0128800 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.7e-06 59.7 42 64.3


User provided reference genes

Program Settings