Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 7.4e-52 206.8 98 100.0
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 8.4e-48 193.4 98 91.8
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 4.6e-46 187.6 98 87.8
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 4.6e-46 187.6 98 87.8
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 4.6e-46 187.6 98 87.8
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 4.6e-46 187.6 98 90.8
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 3.0e-45 184.9 98 89.8
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 2.5e-44 181.8 98 87.8
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 4.3e-44 181.0 98 85.7
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 7.4e-44 180.3 98 85.7
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.7e-43 177.9 98 86.7
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 4.8e-43 177.6 98 84.7
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 6.3e-43 177.2 96 85.4
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 6.3e-43 177.2 98 81.6
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 8.2e-43 176.8 98 84.7
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 2.4e-42 175.3 98 84.7
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.1e-42 174.9 98 82.7
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 6.9e-42 173.7 98 82.7
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 6.9e-42 173.7 98 82.7
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 1.2e-41 172.9 98 83.7
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 3.4e-41 171.4 99 81.8
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 7.7e-41 170.2 98 79.6
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 1.7e-40 169.1 98 79.6
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 2.2e-40 168.7 97 80.4
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 6.5e-40 167.2 98 80.6
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 8.5e-40 166.8 95 82.1
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 8.5e-40 166.8 97 78.4
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 8.5e-40 166.8 95 82.1
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 8.5e-40 166.8 95 82.1
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 1.4e-39 166.0 86 89.5
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 1.2e-38 162.9 95 81.1
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 4.6e-38 161.0 86 86.0
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 6.1e-38 160.6 98 76.5
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 2.3e-37 158.7 98 75.5
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 3.0e-37 158.3 98 75.5
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 1.1e-36 156.4 98 72.4
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 1.5e-36 156.0 98 75.5
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 1.5e-36 156.0 99 76.8
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 2.0e-36 155.6 98 71.4
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 2.5e-36 155.2 99 76.8
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 4.3e-36 154.5 98 77.6
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 4.3e-36 154.5 86 84.9
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 4.3e-36 154.5 98 74.5
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 7.4e-36 153.7 86 86.0
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 1.3e-35 152.9 86 82.6
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 1.7e-35 152.5 98 72.4
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 8.2e-35 150.2 98 69.4
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 1.4e-34 149.4 98 67.3
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 1.4e-34 149.4 98 71.4
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 1.4e-34 149.4 98 71.4
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 1.8e-34 149.1 98 70.4
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 3.1e-34 148.3 98 70.4
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 3.1e-34 148.3 98 70.4
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 5.3e-34 147.5 100 73.0
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 6.9e-34 147.1 98 66.3
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 9.1e-34 146.7 107 68.2
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 1.2e-33 146.4 98 68.4
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 2.6e-33 145.2 100 70.0
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 7.7e-33 143.7 98 73.5
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.0e-32 143.3 86 77.9
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 1.3e-32 142.9 98 70.4
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 1.7e-32 142.5 107 66.4
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 3.8e-32 141.4 98 68.4
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 6.5e-32 140.6 97 68.0
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 8.5e-32 140.2 134 55.2
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 8.5e-32 140.2 86 76.7
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 8.5e-32 140.2 98 63.3
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 8.5e-32 140.2 97 71.1
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 1.9e-31 139.0 98 64.3
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 2.5e-31 138.7 97 62.9
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 3.2e-31 138.3 98 68.4
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 7.2e-31 137.1 99 68.7
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 1.2e-30 136.3 99 69.7
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 2.1e-30 135.6 98 64.3
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 3.6e-30 134.8 87 75.9
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 7.9e-30 133.7 98 70.4
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 7.9e-30 133.7 98 69.4
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 1.0e-29 133.3 99 68.7
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 1.0e-29 133.3 98 62.2
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 1.4e-29 132.9 98 62.2
Haze_11591 Corylus avellana HOM05D005781 ORTHO05D006835 1.8e-29 132.5 75 84.0
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.8e-29 132.5 86 73.3
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 6.7e-29 130.6 86 74.4
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 2.0e-28 129.0 86 70.9
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 3.3e-28 128.3 94 62.8
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 3.3e-28 128.3 86 66.3
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 7.4e-28 127.1 86 66.3
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 7.4e-28 127.1 88 70.5
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 9.7e-28 126.7 88 72.7
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 1.3e-27 126.3 86 69.8
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 1.7e-27 125.9 99 64.6
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 1.1e-26 123.2 100 60.0
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 1.4e-26 122.9 99 61.6
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 1.4e-26 122.9 102 63.7
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 1.4e-26 122.9 84 69.0
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 4.1e-26 121.3 99 59.6
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 9.1e-26 120.2 89 62.9
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 1.2e-25 119.8 86 62.8
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 3.5e-25 118.2 86 64.0
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 5.9e-25 117.5 101 59.4
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 1.3e-24 116.3 105 56.2
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 1.3e-24 116.3 87 64.4
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 5.0e-24 114.4 88 61.4
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 6.5e-24 114.0 105 56.2
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 6.5e-24 114.0 93 60.2
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 1.9e-23 112.5 102 56.9
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 1.9e-23 112.5 104 55.8
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 5.5e-23 110.9 103 54.4
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 9.4e-23 110.2 100 53.0
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 9.4e-23 110.2 102 56.9
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 1.6e-22 109.4 105 58.1
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 2.1e-22 109.0 98 57.1
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 4.7e-22 107.8 107 51.4
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 6.1e-22 107.5 69 68.1
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 8.0e-22 107.1 109 50.5
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 1.0e-21 106.7 104 53.8
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 2.6e-20 102.1 75 68.0
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 4.8e-19 97.8 83 57.8
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 1.8e-18 95.9 82 58.5
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 3.1e-18 95.1 58 75.9
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 7.0e-18 94.0 60 73.3
VMungo0251G3003 Vigna mungo HOM05D005781 ORTHO05D006835 9.1e-18 93.6 75 56.0
A09p11320 Brassica napus HOM05D005781 ORTHO05D006835 5.0e-16 87.8 91 50.5
BraA09t36770Z Brassica rapa HOM05D005781 ORTHO05D006835 5.0e-16 87.8 91 50.5
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 1.2e-14 83.2 73 54.8
Zm00001eb217150 Zea mays HOM05D000360 ORTHO05D006835 1.5e-12 76.3 55 63.6
Zm00001eb352440 Zea mays HOM05D000360 ORTHO05D006835 9.8e-12 73.6 55 61.8
Pp3c9_710 Physcomitrium patens HOM05D005781 ORTHO05D006835 3.1e-10 68.6 53 52.8
C09p13330 Brassica napus HOM05D005781 ORTHO05D006835 5.4e-10 67.8 77 44.2
BolC9t54226H Brassica oleracea HOM05D005781 ORTHO05D006835 5.4e-10 67.8 77 44.2
RcHm_v2.0_Chr1g0326231 Rosa chinensis HOM05D005781 ORTHO05D006835 7.0e-10 67.4 70 51.4
Lalb_Chr07g0188641 Lupinus albus HOM05D005781 ORTHO05D006835 1.2e-09 66.6 51 60.8
BcaC04g22979 Brassica carinata HOM05D005781 ORTHO05D006835 3.5e-09 65.1 49 57.1
Mapoly0010s0158 Marchantia polymorpha HOM05D005781 ORTHO05D006835 5.9e-09 64.3 62 48.4
BcaB01g05235 Brassica carinata HOM05D005781 ORTHO05D006835 7.7e-09 63.9 39 71.8
COL.COLO4_22630 Corchorus olitorius HOM05D005781 ORTHO05D006835 7.2e-07 57.4 33 81.8
Zm00001eb318190 Zea mays HOM05D000360 ORTHO05D006835 4.7e-06 54.7 43 58.1


User provided reference genes

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