Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G241500 Manihot esculenta HOM05D005894 ORTHO05D007461 5.8e-183 644.0 315 100.0
Potri.002G177500 Populus trichocarpa HOM05D005894 ORTHO05D007461 1.2e-135 486.9 311 75.6
Sabra02G0136100 Salix brachista HOM05D005894 ORTHO05D007461 2.1e-132 476.1 312 74.7
TWI14G1398 Tripterygium wilfordii HOM05D005894 ORTHO05D007461 3.4e-122 442.2 290 72.8
Atru.chr5.746 Acer truncatum HOM05D005894 ORTHO05D007461 2.4e-120 436.0 292 72.3
Potri.014G103800 Populus trichocarpa HOM05D005894 ORTHO05D007461 1.0e-118 430.6 312 69.6
Cfa003752 Carpinus fangiana HOM05D005894 ORTHO05D007461 1.3e-118 430.3 308 67.5
Ciclev10023878m.g Citrus clementina HOM05D005894 ORTHO05D007461 2.3e-118 429.5 307 69.1
TAR375G0623 Trochodendron aralioides HOM05D005894 ORTHO05D007461 2.5e-117 426.0 320 64.1
Actinidia20275 Actinidia chinensis HOM05D005894 ORTHO05D007461 2.8e-116 422.5 316 64.9
Haze_15704 Corylus avellana HOM05D005894 ORTHO05D007461 4.7e-116 421.8 308 67.2
Haze_15713 Corylus avellana HOM05D005894 ORTHO05D007461 8.8e-115 417.5 308 66.6
Carub.0001s0103 Capsella rubella HOM05D005894 ORTHO05D007461 2.0e-114 416.4 314 63.7
AL1G11320 Arabidopsis lyrata HOM05D005894 ORTHO05D007461 3.4e-114 415.6 316 63.3
Thecc.01G335500 Theobroma cacao HOM05D005894 ORTHO05D007461 5.7e-114 414.8 315 65.1
Duzib133G0870 Durio zibethinus HOM05D005894 ORTHO05D007461 7.5e-114 414.5 318 63.8
COL.COLO4_06220 Corchorus olitorius HOM05D005894 ORTHO05D007461 6.3e-113 411.4 311 63.7
Nn3g18834 Nelumbo nucifera HOM05D005894 ORTHO05D007461 6.3e-113 411.4 322 61.2
Cpa.g.sc141.18 Carica papaya HOM05D005894 ORTHO05D007461 8.3e-113 411.0 334 61.4
Gohir.A07G134700 Gossypium hirsutum HOM05D005894 ORTHO05D007461 8.3e-113 411.0 316 64.6
Duzib138G0081 Durio zibethinus HOM05D005894 ORTHO05D007461 1.4e-112 410.2 322 63.0
AT1G01180 Arabidopsis thaliana HOM05D005894 ORTHO05D007461 1.8e-112 409.8 314 63.1
CARHR001290 Cardamine hirsuta HOM05D005894 ORTHO05D007461 7.0e-112 407.9 295 65.4
CiPaw.01G080700 Carya illinoinensis HOM05D005894 ORTHO05D007461 7.0e-112 407.9 310 63.5
Gorai.001G151400 Gossypium raimondii HOM05D005894 ORTHO05D007461 1.2e-111 407.1 316 64.2
Hma1.2p1_0309F.1_g120580 Hydrangea macrophylla HOM05D005894 ORTHO05D007461 2.7e-111 406.0 302 64.9
BraA10t42349Z Brassica rapa HOM05D005894 ORTHO05D007461 4.5e-111 405.2 309 63.8
A10p00720 Brassica napus HOM05D005894 ORTHO05D007461 5.9e-111 404.8 309 63.4
Sp1g01110 Schrenkiella parvula HOM05D005894 ORTHO05D007461 7.8e-111 404.4 314 62.1
BcaB03g13563 Brassica carinata HOM05D005894 ORTHO05D007461 1.0e-110 404.1 314 63.1
C05p00760 Brassica napus HOM05D005894 ORTHO05D007461 1.3e-110 403.7 312 61.9
FAN10G2153 Fragaria x ananassa HOM05D005894 ORTHO05D007461 1.3e-110 403.7 313 62.6
Aa31LG1G10550 Aethionema arabicum HOM05D005894 ORTHO05D007461 2.9e-110 402.5 312 60.6
Gohir.A12G115600 Gossypium hirsutum HOM05D005894 ORTHO05D007461 5.0e-110 401.7 317 62.5
BolC5t28860H Brassica oleracea HOM05D005894 ORTHO05D007461 8.6e-110 401.0 312 61.5
Thhalv10008287m.g Eutrema salsugineum HOM05D005894 ORTHO05D007461 1.5e-109 400.2 312 61.2
THA.LOC104801356 Tarenaya hassleriana HOM05D005894 ORTHO05D007461 5.6e-109 398.3 312 61.9
arahy.Tifrunner.gnm1.ann1.UMNZ42 Arachis hypogaea HOM05D005894 ORTHO05D007461 7.3e-109 397.9 323 60.1
arahy.Tifrunner.gnm1.ann1.YB3WUJ Arachis hypogaea HOM05D005894 ORTHO05D007461 7.3e-109 397.9 323 60.1
ClCG06G002760 Citrullus lanatus HOM05D005894 ORTHO05D007461 9.5e-109 397.5 296 62.2
QL08p046715 Quercus lobata HOM05D005894 ORTHO05D007461 9.5e-109 397.5 307 61.9
MBI04_g25320_MAGBIO Magnolia biondii HOM05D005894 ORTHO05D007461 1.6e-108 396.7 317 61.5
arahy.Tifrunner.gnm1.ann1.FN9JYV Arachis hypogaea HOM05D005894 ORTHO05D007461 2.1e-108 396.4 323 60.1
arahy.Tifrunner.gnm1.ann1.IJN1JI Arachis hypogaea HOM05D005894 ORTHO05D007461 2.8e-108 396.0 305 62.6
FAN03G0327 Fragaria x ananassa HOM05D005894 ORTHO05D007461 4.7e-108 395.2 309 61.2
PSO063G1123 Papaver somniferum HOM05D005894 ORTHO05D007461 4.7e-108 395.2 321 60.1
Rhsim07G0001000 Rhododendron simsii HOM05D005894 ORTHO05D007461 6.1e-108 394.8 302 63.2
Lalb_Chr17g0342931 Lupinus albus HOM05D005894 ORTHO05D007461 1.4e-107 393.7 288 63.5
FAN10G4192 Fragaria x ananassa HOM05D005894 ORTHO05D007461 2.3e-107 392.9 311 60.8
vmacro04295 Vaccinium macrocarpon HOM05D005894 ORTHO05D007461 2.3e-107 392.9 302 63.9
FAN06G1719 Fragaria x ananassa HOM05D005894 ORTHO05D007461 3.0e-107 392.5 311 60.5
ECA234G4535 Erigeron canadensis HOM05D005894 ORTHO05D007461 1.5e-106 390.2 289 61.6
Prupe.2G195400 Prunus persica HOM05D005894 ORTHO05D007461 1.5e-106 390.2 290 63.8
Gohir.D12G119200 Gossypium hirsutum HOM05D005894 ORTHO05D007461 5.7e-106 388.3 319 60.5
VMungo0331G1846 Vigna mungo HOM05D005894 ORTHO05D007461 2.9e-105 386.0 289 63.7
Lj3g0011008 Lotus japonicus HOM05D005894 ORTHO05D007461 3.7e-105 385.6 308 61.7
MD07G1156900 Malus domestica HOM05D005894 ORTHO05D007461 2.4e-104 382.9 291 61.9
Sed0016091 Sechium edule HOM05D005894 ORTHO05D007461 4.1e-104 382.1 282 63.8
AUR62004546 Chenopodium quinoa HOM05D005894 ORTHO05D007461 9.2e-104 380.9 324 56.2
Lj2g0016031 Lotus japonicus HOM05D005894 ORTHO05D007461 1.6e-103 380.2 298 63.1
QL08p046701 Quercus lobata HOM05D005894 ORTHO05D007461 2.0e-103 379.8 296 64.2
HanXRQChr16g0524851 Helianthus annuus HOM05D005894 ORTHO05D007461 4.6e-103 378.6 274 63.5
Sc01g0002310 Simmondsia chinensis HOM05D005894 ORTHO05D007461 5.9e-103 378.3 283 62.9
MSTRG.20917 Avicennia marina HOM05D005894 ORTHO05D007461 7.8e-103 377.9 286 60.8
Glyma.07G051400 Glycine max HOM05D005894 ORTHO05D007461 7.8e-103 377.9 293 61.4
Dinv32633 Davidia involucrata HOM05D005894 ORTHO05D007461 1.7e-102 376.7 298 63.1
HanXRQChr17g0563091 Helianthus annuus HOM05D005894 ORTHO05D007461 2.3e-102 376.3 282 59.9
Lsat_1_v5_gn_4_31980 Lactuca sativa HOM05D005894 ORTHO05D007461 2.3e-102 376.3 302 57.9
Phvul.010G118000 Phaseolus vulgaris HOM05D005894 ORTHO05D007461 2.3e-102 376.3 290 61.0
Sed0008841 Sechium edule HOM05D005894 ORTHO05D007461 5.0e-102 375.2 282 61.3
Lsat_1_v5_gn_4_31960 Lactuca sativa HOM05D005894 ORTHO05D007461 6.6e-102 374.8 300 59.0
Oeu042964.1 Olea europaea HOM05D005894 ORTHO05D007461 1.1e-101 374.0 290 60.7
ATR0090G035 Amborella trichopoda HOM05D005894 ORTHO05D007461 1.9e-101 373.2 300 59.0
Ca_23494_v3 Cicer arietinum L. HOM05D005894 ORTHO05D007461 7.3e-101 371.3 293 61.1
Ca_29944_v3 Cicer arietinum L. HOM05D005894 ORTHO05D007461 7.3e-101 371.3 293 61.1
PSO782G1789 Papaver somniferum HOM05D005894 ORTHO05D007461 1.2e-100 370.5 330 55.8
Medtr8g024680 Medicago truncatula HOM05D005894 ORTHO05D007461 1.6e-100 370.2 285 63.2
MELO3C022251.2 Cucumis melo HOM05D005894 ORTHO05D007461 2.1e-100 369.8 254 64.2
Ah.05g179110 Amaranthus hybridus HOM05D005894 ORTHO05D007461 2.8e-100 369.4 292 59.6
Peaxi162Scf00767g00044 Petunia axillaris HOM05D005894 ORTHO05D007461 6.2e-100 368.2 293 62.1
PGSC0003DMG400018381 Solanum tuberosum HOM05D005894 ORTHO05D007461 4.0e-99 365.5 316 59.2
CsaV3_6G008930 Cucumis sativus L. HOM05D005894 ORTHO05D007461 8.9e-99 364.4 240 65.4
AUR62022660 Chenopodium quinoa HOM05D005894 ORTHO05D007461 4.4e-98 362.1 217 71.9
Solyc01g096380.1 Solanum lycopersicum HOM05D005894 ORTHO05D007461 4.4e-98 362.1 310 58.1
Nitab4.5_0000307g0270 Nicotiana tabacum HOM05D005894 ORTHO05D007461 9.8e-98 360.9 321 57.3
CAN.G1045.39 Capsicum annuum HOM05D005894 ORTHO05D007461 3.7e-97 359.0 290 59.7
Sopen00g010520 Solanum pennellii HOM05D005894 ORTHO05D007461 3.7e-97 359.0 313 57.8
Psat4g216640 Pisum sativum HOM05D005894 ORTHO05D007461 1.1e-96 357.5 328 54.0
Gorai.008G129200 Gossypium raimondii HOM05D005894 ORTHO05D007461 1.2e-95 354.0 313 59.4
MSTRG.20916 Avicennia marina HOM05D005894 ORTHO05D007461 4.6e-95 352.1 290 55.9
Haze_15705 Corylus avellana HOM05D005894 ORTHO05D007461 1.3e-94 350.5 267 65.2
Cc02_g39840 Coffea canephora HOM05D005894 ORTHO05D007461 3.9e-94 349.0 331 55.9
Ah.07g207870 Amaranthus hybridus HOM05D005894 ORTHO05D007461 6.6e-94 348.2 293 54.9
MBI04_g22377_MAGBIO Magnolia biondii HOM05D005894 ORTHO05D007461 1.8e-91 340.1 285 58.9
TPR.G14294 Trifolium pratense HOM05D005894 ORTHO05D007461 2.3e-91 339.7 281 56.2
Lj9P603T40 Lonicera japonica HOM05D005894 ORTHO05D007461 3.1e-91 339.3 257 61.1
SEGI_06461 Sequoiadendron giganteum HOM05D005894 ORTHO05D007461 2.6e-90 336.3 237 62.0
MSTRG.26254 Avicennia marina HOM05D005894 ORTHO05D007461 1.0e-86 324.3 287 55.7
Sc01g0002320 Simmondsia chinensis HOM05D005894 ORTHO05D007461 3.9e-86 322.4 288 52.1
Sc01g0000420 Simmondsia chinensis HOM05D005894 ORTHO05D007461 4.7e-84 315.5 291 49.8
Migut.B01913 Erythranthe guttata HOM05D005894 ORTHO05D007461 1.4e-83 313.9 314 48.1
TPR.G25260 Trifolium pratense HOM05D005894 ORTHO05D007461 1.2e-82 310.8 185 75.7
SGA_v2.0_scaffold5G03060 Striga asiatica HOM05D005894 ORTHO05D007461 1.5e-82 310.5 285 52.6
Gohir.D07G139300 Gossypium hirsutum HOM05D005894 ORTHO05D007461 2.0e-82 310.1 259 60.6
FAN01G2899 Fragaria x ananassa HOM05D005894 ORTHO05D007461 2.1e-79 300.1 232 59.1
Zm00001eb102910 Zea mays HOM05D005894 ORTHO05D007461 2.1e-79 300.1 240 57.5
Zm00001eb102940 Zea mays HOM05D005894 ORTHO05D007461 2.1e-79 300.1 240 57.5
Pp3c20_5150 Physcomitrium patens HOM05D005894 ORTHO05D007461 6.0e-79 298.5 244 53.3
Os09g0518900 Oryza sativa ssp. japonica HOM05D005894 ORTHO05D007461 2.3e-78 296.6 242 57.0
EL10Ac5g10561 Beta vulgaris HOM05D005894 ORTHO05D007461 8.7e-78 294.7 320 44.4
Pp3c23_20890 Physcomitrium patens HOM05D005894 ORTHO05D007461 1.1e-77 294.3 271 50.2
SalBow6G4791 Salvia bowleyana HOM05D005894 ORTHO05D007461 1.1e-77 294.3 297 50.8
AagrBONN_evm.TU.Sc2ySwM_228.2264 Anthoceros agrestis HOM05D005894 ORTHO05D007461 1.4e-75 287.3 256 52.0
Mapoly0044s0088 Marchantia polymorpha HOM05D005894 ORTHO05D007461 4.0e-75 285.8 252 50.0
SalBow3G0292 Salvia bowleyana HOM05D005894 ORTHO05D007461 6.9e-75 285.0 210 58.6
SalBow3G4666 Salvia bowleyana HOM05D005894 ORTHO05D007461 6.9e-75 285.0 210 58.6
unitig_52.g17564 Utricularia gibba HOM05D005894 ORTHO05D007461 3.0e-70 269.6 227 54.2
Oeu022737.1 Olea europaea HOM05D005894 ORTHO05D007461 1.2e-66 257.7 151 72.8
unitig_744.g24593 Utricularia gibba HOM05D005894 ORTHO05D007461 2.9e-65 253.1 296 44.9
unitig_744.g24591 Utricularia gibba HOM05D005894 ORTHO05D007461 3.2e-64 249.6 296 43.9
unitig_21.g20086 Utricularia gibba HOM05D005894 ORTHO05D007461 2.1e-63 246.9 282 44.0
FAN06G4171 Fragaria x ananassa HOM05D005894 ORTHO05D007461 2.0e-58 230.3 133 74.4
unitig_744.g24581 Utricularia gibba HOM05D005894 ORTHO05D007461 4.6e-55 219.2 238 47.5
EL10Ac1g00202 Beta vulgaris HOM05D005894 ORTHO05D007461 5.6e-53 212.2 137 67.9
RcHm_v2.0_Chr1g0360831 Rosa chinensis HOM05D005894 ORTHO05D007461 7.4e-53 211.8 174 59.8
Sc17g0001460 Simmondsia chinensis HOM05D005894 ORTHO05D387453 6.5e-49 198.7 282 39.7
SMO367G0414 Selaginella moellendorffii HOM05D005894 ORTHO05D007461 1.3e-44 184.5 137 58.4
RcHm_v2.0_Chr1g0360821 Rosa chinensis HOM05D005894 ORTHO05D007461 6.9e-43 178.7 105 73.3
unitig_21.g20129 Utricularia gibba HOM05D005894 ORTHO05D007461 2.8e-28 130.2 103 55.3
Sc22g0003370 Simmondsia chinensis HOM05D005894 ORTHO05D007461 6.1e-23 112.5 139 43.9
unitig_21.g20130 Utricularia gibba HOM05D005894 ORTHO05D007461 3.7e-12 76.6 126 36.5
SMO195G0042 Selaginella moellendorffii HOM05D005894 ORTHO05D376219 1.8e-06 57.8 69 42.0
unitig_52.g17562 Utricularia gibba HOM05D005894 ORTHO05D420364 3.0e-06 57.0 46 52.2


User provided reference genes

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