Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G237100 Manihot esculenta HOM05D007122 ORTHO05D008918 1.1e-173 613.2 306 100.0
Potri.002G183700 Populus trichocarpa HOM05D007122 ORTHO05D008918 1.1e-96 357.5 247 75.7
COL.COLO4_23084 Corchorus olitorius HOM05D007122 ORTHO05D008918 2.0e-95 353.2 255 73.3
Gorai.007G115100 Gossypium raimondii HOM05D007122 ORTHO05D008918 3.2e-93 345.9 242 72.7
CiPaw.01G090900 Carya illinoinensis HOM05D007122 ORTHO05D008918 5.4e-93 345.1 240 73.3
TWI59G0863 Tripterygium wilfordii HOM05D007122 ORTHO05D008918 9.2e-93 344.4 248 73.0
Thecc.01G329100 Theobroma cacao HOM05D007122 ORTHO05D008918 2.1e-92 343.2 247 73.3
Gohir.D11G107500 Gossypium hirsutum HOM05D007122 ORTHO05D008918 3.5e-92 342.4 245 71.0
Cpa.g.sc57.60 Carica papaya HOM05D007122 ORTHO05D008918 3.9e-91 339.0 261 69.3
QL05p084392 Quercus lobata HOM05D007122 ORTHO05D008918 1.1e-90 337.4 240 72.1
CANSAT01G1971 Cannabis sativa HOM05D007122 ORTHO05D008918 3.3e-90 335.9 249 71.1
Prupe.3G022800 Prunus persica HOM05D007122 ORTHO05D008918 4.3e-90 335.5 240 71.7
MD17G1162500 Malus domestica HOM05D007122 ORTHO05D008918 5.6e-90 335.1 240 71.2
RcHm_v2.0_Chr2g0149531 Rosa chinensis HOM05D007122 ORTHO05D008918 2.1e-89 333.2 242 71.5
FAN05G3936 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.2e-87 327.4 240 70.8
FAN14G1589 Fragaria x ananassa HOM05D007122 ORTHO05D008918 3.4e-87 325.9 242 69.8
FvH4_6g36990 Fragaria vesca HOM05D007122 ORTHO05D008918 1.7e-86 323.6 242 69.4
Atru.chr5.816 Acer truncatum HOM05D007122 ORTHO05D008918 6.4e-86 321.6 251 68.9
GSVIVG01027487001 Vitis vinifera HOM05D007122 ORTHO05D008918 1.4e-85 320.5 239 70.3
TAR629G1569 Trochodendron aralioides HOM05D007122 ORTHO05D008918 5.4e-85 318.5 240 68.3
AT2G46910 Arabidopsis thaliana HOM05D007122 ORTHO05D008918 5.1e-83 312.0 248 66.9
Sp4g28930 Schrenkiella parvula HOM05D007122 ORTHO05D008918 5.1e-83 312.0 247 66.8
ClCG07G014660 Citrullus lanatus HOM05D007122 ORTHO05D008918 6.6e-83 311.6 209 74.6
Ciclev10021604m.g Citrus clementina HOM05D007122 ORTHO05D008918 6.6e-83 311.6 245 69.4
A05p00930 Brassica napus HOM05D007122 ORTHO05D008918 4.3e-82 308.9 247 66.4
Carub.0004s2963 Capsella rubella HOM05D007122 ORTHO05D008918 4.3e-82 308.9 247 66.0
Thhalv10001577m.g Eutrema salsugineum HOM05D007122 ORTHO05D008918 1.6e-81 307.0 247 65.6
CARHR142260 Cardamine hirsuta HOM05D007122 ORTHO05D008918 6.2e-81 305.1 243 66.3
BcaC02g12634 Brassica carinata HOM05D007122 ORTHO05D008918 8.1e-81 304.7 243 65.4
MELO3C026712.2 Cucumis melo HOM05D007122 ORTHO05D008918 8.1e-81 304.7 208 73.6
Sabra02G0131900 Salix brachista HOM05D007122 ORTHO05D008918 1.1e-80 304.3 336 54.8
CsaV3_3G030490 Cucumis sativus L. HOM05D007122 ORTHO05D008918 2.4e-80 303.1 208 72.6
VMungo0331G0463 Vigna mungo HOM05D000070 ORTHO05D003491 2.4e-80 303.1 270 62.2
Phvul.010G164100 Phaseolus vulgaris HOM05D007122 ORTHO05D008918 3.1e-80 302.8 227 69.2
BraA05t19094Z Brassica rapa HOM05D007122 ORTHO05D008918 4.0e-80 302.4 248 65.3
PGR042G2951 Punica granatum HOM05D007122 ORTHO05D008918 4.0e-80 302.4 248 64.1
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 2.6e-79 299.7 244 65.6
Hma1.2p1_0074F.1_g038925 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 7.6e-79 298.1 204 76.5
MBI12_g33188_MAGBIO Magnolia biondii HOM05D007122 ORTHO05D008918 2.2e-78 296.6 218 71.6
PSO782G5442 Papaver somniferum HOM05D007122 ORTHO05D008918 1.4e-77 293.9 227 66.5
Glyma.07G002100 Glycine max HOM05D007122 ORTHO05D008918 3.2e-77 292.7 185 80.0
Aa31LG1G28270 Aethionema arabicum HOM05D007122 ORTHO05D008918 1.6e-76 290.4 247 65.6
Cc02_g30330 Coffea canephora HOM05D007122 ORTHO05D008918 1.6e-76 290.4 231 64.9
Lj3g0016159 Lotus japonicus HOM05D007122 ORTHO05D008918 2.7e-76 289.7 203 71.9
Nn1g00501 Nelumbo nucifera HOM05D007122 ORTHO05D008918 3.5e-76 289.3 208 73.1
Medtr4g005390 Medicago truncatula HOM05D007122 ORTHO05D008918 6.0e-76 288.5 207 70.5
Duzib133G0914 Durio zibethinus HOM05D007122 ORTHO05D008918 1.8e-75 287.0 242 63.2
Sopen08g022350 Solanum pennellii HOM05D007122 ORTHO05D008918 8.7e-75 284.6 224 63.8
THA.LOC104802109 Tarenaya hassleriana HOM05D007122 ORTHO05D008918 1.1e-74 284.3 249 63.5
Lalb_Chr04g0264851 Lupinus albus HOM05D007122 ORTHO05D008918 1.5e-74 283.9 183 77.0
Actinidia33027 Actinidia chinensis HOM05D007122 ORTHO05D008918 4.3e-74 282.3 238 65.1
Peaxi162Scf00822g00313 Petunia axillaris HOM05D007122 ORTHO05D008918 4.3e-74 282.3 233 63.1
CAN.G21.48 Capsicum annuum HOM05D007122 ORTHO05D008918 9.6e-74 281.2 224 63.4
Solyc08g068590.4 Solanum lycopersicum HOM05D007122 ORTHO05D008918 9.6e-74 281.2 224 62.9
Lj9A610T61 Lonicera japonica HOM05D007122 ORTHO05D008918 1.6e-73 280.4 191 75.9
Ca_20970_v3 Cicer arietinum L. HOM05D007122 ORTHO05D008918 3.7e-73 279.3 207 68.1
Eucgr.E00013 Eucalyptus grandis HOM05D007122 ORTHO05D008918 3.7e-73 279.3 202 71.8
AUR62028625 Chenopodium quinoa HOM05D007122 ORTHO05D008918 8.1e-73 278.1 217 65.9
arahy.Tifrunner.gnm1.ann1.XK7RJX Arachis hypogaea HOM05D007122 ORTHO05D008918 4.0e-72 275.8 183 74.3
Psat7g265240 Pisum sativum HOM05D007122 ORTHO05D008918 5.3e-72 275.4 190 71.6
TPR.G38811 Trifolium pratense HOM05D007122 ORTHO05D008918 6.9e-72 275.0 190 74.7
arahy.Tifrunner.gnm1.ann1.KLKB5C Arachis hypogaea HOM05D007122 ORTHO05D008918 1.2e-71 274.2 183 73.2
MSTRG.12208 Avicennia marina HOM05D007122 ORTHO05D008918 1.5e-71 273.9 205 69.3
Rhsim04G0175900 Rhododendron simsii HOM05D007122 ORTHO05D008918 1.5e-71 273.9 260 57.3
HPP92_007409 Vanilla planifolia HOM05D007122 ORTHO05D008918 1.0e-70 271.2 244 59.8
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 2.2e-70 270.0 213 69.0
AUR62008050 Chenopodium quinoa HOM05D007122 ORTHO05D008918 3.8e-70 269.2 190 70.0
EL10Ac5g10570 Beta vulgaris HOM05D007122 ORTHO05D008918 6.4e-70 268.5 193 67.9
Oeu050289.1 Olea europaea HOM05D007122 ORTHO05D008918 4.2e-69 265.8 198 67.2
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 7.1e-69 265.0 191 72.8
Nitab4.5_0006202g0020 Nicotiana tabacum HOM05D007122 ORTHO05D008918 1.2e-68 264.2 223 61.4
HanXRQChr16g0524441 Helianthus annuus HOM05D007122 ORTHO05D008918 4.6e-68 262.3 206 68.0
Hund02816 Selenicereus undatus HOM05D007122 ORTHO05D008918 1.0e-67 261.2 209 65.6
PGSC0003DMG400029047 Solanum tuberosum HOM05D007122 ORTHO05D008918 1.3e-67 260.8 254 54.3
CDE02G4652 Ceratophyllum demersum HOM05D007122 ORTHO05D008918 1.8e-67 260.4 240 60.8
ATR0579G047 Amborella trichopoda HOM05D007122 ORTHO05D008918 8.7e-67 258.1 208 63.5
vmacro08515 Vaccinium macrocarpon HOM05D007122 ORTHO05D008918 1.9e-66 256.9 202 67.8
unitig_0.g1006 Utricularia gibba HOM05D007122 ORTHO05D003998 4.3e-66 255.8 207 62.3
Os10g0509200 Oryza sativa ssp. japonica HOM05D007122 ORTHO05D008918 7.4e-66 255.0 230 59.6
Zm00001eb220590 Zea mays HOM05D007122 ORTHO05D008918 4.8e-65 252.3 200 65.0
Aqoxy5G04392 Aquilegia oxysepala HOM05D007122 ORTHO05D008918 8.2e-65 251.5 207 65.7
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 2.4e-64 250.0 206 61.7
SGA_v2.0_scaffold104G30244 Striga asiatica HOM05D007122 ORTHO05D008918 9.0e-64 248.1 247 56.3
Dinv25395 Davidia involucrata HOM05D007122 ORTHO05D008918 1.1e-61 241.1 226 58.4
Sed0017612 Sechium edule HOM05D007122 ORTHO05D008918 1.2e-60 237.7 150 77.3
Dinv32665 Davidia involucrata HOM05D007122 ORTHO05D008918 1.5e-58 230.7 166 69.9
Glyma.08G224600 Glycine max HOM05D007122 ORTHO05D008918 3.7e-57 226.1 152 77.0
Sc05g0001590 Simmondsia chinensis HOM05D007122 ORTHO05D008918 8.2e-57 224.9 195 59.5
Gohir.A11G103000 Gossypium hirsutum HOM05D007122 ORTHO05D008918 1.1e-56 224.6 142 79.6
Glyma.14G134000 Glycine max HOM05D007122 ORTHO05D008918 5.0e-54 215.7 153 71.2
Mapoly0069s0014 Marchantia polymorpha HOM05D007122 ORTHO05D008918 2.1e-52 210.3 200 55.0
Ah.11g050690 Amaranthus hybridus HOM05D007122 ORTHO05D008918 2.0e-50 203.8 175 62.3
SMO232G0083 Selaginella moellendorffii HOM05D007122 ORTHO05D008918 3.1e-48 196.4 196 52.6
Migut.N02127 Erythranthe guttata HOM05D007122 ORTHO05D008918 2.2e-46 190.3 149 65.8
Pp3c11_15290 Physcomitrium patens HOM05D007122 ORTHO05D008918 1.6e-44 184.1 152 55.9
PSO063G7482 Papaver somniferum HOM05D007122 ORTHO05D008918 1.2e-39 167.9 104 79.8
Haze_16258 Corylus avellana HOM05D007122 ORTHO05D008918 2.0e-39 167.2 379 35.4
QL05p083819 Quercus lobata HOM05D007122 ORTHO05D008918 1.6e-36 157.5 178 51.7
FAN02G0509 Fragaria x ananassa HOM05D007122 ORTHO05D008918 2.1e-36 157.1 162 55.6
Zm00001eb094490 Zea mays HOM05D007122 ORTHO05D008918 3.8e-30 136.3 94 71.3
Pp3c2_10460 Physcomitrium patens HOM05D007122 ORTHO05D008918 5.5e-29 132.5 145 42.8
MCO07G119 Micromonas commoda HOM05D007122 ORTHO05D008918 1.3e-22 111.3 206 37.9
Cre01.g039550 Chlamydomonas reinhardtii HOM05D007122 ORTHO05D008918 2.0e-18 97.4 194 34.0
FAN09G2218 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.5e-13 81.3 91 50.5
SGA_v2.0_scaffold159G37569 Striga asiatica HOM05D007122 ORTHO05D008918 5.2e-11 72.8 120 39.2
Psat7g265400 Pisum sativum HOM05D007122 ORTHO05D008918 1.5e-10 71.2 47 72.3
CANSAT56G3028 Cannabis sativa HOM05D002234 ORTHO05D002254 1.7e-09 67.8 154 33.1
CANSAT56G3737 Cannabis sativa HOM05D002234 ORTHO05D002254 1.7e-09 67.8 154 33.1
COL.COLO4_31843 Corchorus olitorius HOM05D002234 ORTHO05D002254 1.7e-09 67.8 140 35.0
PRCOL_00002778 Prasinoderma coloniale HOM05D007122 ORTHO05D008918 4.9e-09 66.2 181 33.1
THA.LOC104812983 Tarenaya hassleriana HOM05D002234 ORTHO05D002254 1.1e-08 65.1 153 30.7
MELO3C007423.2 Cucumis melo HOM05D002234 ORTHO05D002254 2.4e-08 63.9 202 30.2
SMO367G0795 Selaginella moellendorffii HOM05D002234 ORTHO05D002254 4.1e-08 63.2 153 30.7
Thhalv10021276m.g Eutrema salsugineum HOM05D006432 ORTHO05D008257 2.0e-07 60.8 223 27.4
Os11g0595200 Oryza sativa ssp. japonica HOM05D006432 ORTHO05D008257 2.7e-07 60.5 204 26.5
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 2.7e-07 60.5 145 33.8
Lj6g0013923 Lotus japonicus HOM05D002234 ORTHO05D002254 3.5e-07 60.1 172 30.2
Aa31LG8G9890 Aethionema arabicum HOM05D006432 ORTHO05D008257 4.6e-07 59.7 233 28.3
QL05p084699 Quercus lobata HOM05D007122 ORTHO05D008918 5.9e-07 59.3 53 52.8
Sp3g21070 Schrenkiella parvula HOM05D006432 ORTHO05D008257 5.9e-07 59.3 173 32.4
Carub.0003s2366 Capsella rubella HOM05D006432 ORTHO05D008257 7.8e-07 58.9 166 32.5
PSO210G7268 Papaver somniferum HOM05D002234 ORTHO05D002254 7.8e-07 58.9 151 31.8
HPP92_020804 Vanilla planifolia HOM05D002234 ORTHO05D002254 1.0e-06 58.5 156 33.3
A07p09040 Brassica napus HOM05D006432 ORTHO05D008257 1.3e-06 58.2 171 33.9
BolC7t41898H Brassica oleracea HOM05D006432 ORTHO05D008257 1.3e-06 58.2 232 29.7
Peaxi162Scf00392g00732 Petunia axillaris HOM05D006432 ORTHO05D008257 1.3e-06 58.2 194 27.3
BraA07t28698Z Brassica rapa HOM05D006432 ORTHO05D008257 1.7e-06 57.8 171 33.9
Lsat_1_v5_gn_2_40021 Lactuca sativa HOM05D006432 ORTHO05D008257 1.7e-06 57.8 172 30.2
Lj2A233G30 Lonicera japonica HOM05D002234 ORTHO05D002254 1.7e-06 57.8 192 29.7
PRCOL_00001829 Prasinoderma coloniale HOM05D002234 ORTHO05D002254 1.7e-06 57.8 91 38.5
Sed0005439 Sechium edule HOM05D006432 ORTHO05D008257 1.7e-06 57.8 196 28.1
Hund21439 Selenicereus undatus HOM05D002234 ORTHO05D002254 1.7e-06 57.8 150 32.0
BcaC06g35517 Brassica carinata HOM05D006432 ORTHO05D008257 2.3e-06 57.4 232 29.3
C07p14010 Brassica napus HOM05D006432 ORTHO05D008257 2.3e-06 57.4 171 33.3
AL3G38060 Arabidopsis lyrata HOM05D006432 ORTHO05D008257 2.9e-06 57.0 166 31.9
AT3G23400 Arabidopsis thaliana HOM05D006432 ORTHO05D008257 2.9e-06 57.0 166 31.9
C04p72510 Brassica napus HOM05D000051 ORTHO05D000015 2.9e-06 57.0 95 40.0
BolC4t28739H Brassica oleracea HOM05D000051 ORTHO05D000015 2.9e-06 57.0 95 40.0
ECA240G3223 Erigeron canadensis HOM05D002023 ORTHO05D002049 2.9e-06 57.0 209 29.2
Cfa000140 Carpinus fangiana HOM05D002234 ORTHO05D002254 3.9e-06 56.6 140 32.1
Ciclev10007095m.g Citrus clementina HOM05D006432 ORTHO05D008257 3.9e-06 56.6 166 30.1
Cc03_g05780 Coffea canephora HOM05D006432 ORTHO05D008257 3.9e-06 56.6 201 27.4
Zm00001eb114860 Zea mays HOM05D006432 ORTHO05D008257 3.9e-06 56.6 168 30.4
Gohir.A09G228800 Gossypium hirsutum HOM05D006432 ORTHO05D008257 5.0e-06 56.2 239 27.6
Gohir.D09G229900 Gossypium hirsutum HOM05D006432 ORTHO05D008257 5.0e-06 56.2 219 27.9
CANSAT78G0744 Cannabis sativa HOM05D006432 ORTHO05D008257 8.6e-06 55.5 150 31.3
unitig_0.g1188 Utricularia gibba HOM05D006432 ORTHO05D008257 8.6e-06 55.5 206 25.7


User provided reference genes

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