Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 6.8e-162 573.9 288 100.0
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 7.6e-121 437.6 288 81.2
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 1.3e-101 373.6 295 68.8
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 2.3e-101 372.9 286 69.9
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 7.4e-100 367.9 287 69.0
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 1.6e-99 366.7 271 68.6
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 3.1e-98 362.5 286 68.2
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 5.3e-98 361.7 290 67.6
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 6.9e-98 361.3 290 67.9
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.0e-97 359.8 286 67.8
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 9.9e-97 357.5 285 67.7
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 1.3e-96 357.1 269 69.5
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.7e-96 356.7 289 67.1
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 8.4e-96 354.4 283 67.5
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 8.4e-96 354.4 277 69.7
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 1.9e-95 353.2 267 68.2
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.4e-95 352.8 265 69.8
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 4.2e-95 352.1 287 65.9
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 7.1e-95 351.3 291 67.4
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 9.3e-95 350.9 287 65.5
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 9.3e-95 350.9 283 67.1
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 1.2e-94 350.5 296 66.9
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 3.5e-94 349.0 283 66.8
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 6.0e-94 348.2 283 66.8
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 3.3e-92 342.4 298 64.8
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 3.3e-92 342.4 288 65.6
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 1.8e-90 336.7 288 63.2
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 1.5e-89 333.6 287 63.4
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 3.4e-89 332.4 289 63.7
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 1.7e-88 330.1 287 63.4
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 2.9e-88 329.3 271 65.7
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 2.9e-88 329.3 223 75.3
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.4e-87 327.0 275 64.0
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 4.2e-87 325.5 218 76.1
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 7.1e-87 324.7 271 64.6
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 7.1e-87 324.7 306 60.5
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 9.3e-87 324.3 223 74.4
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 1.6e-86 323.6 278 61.2
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 2.1e-86 323.2 285 62.1
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 3.5e-86 322.4 289 62.6
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 3.0e-85 319.3 292 62.0
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 5.1e-85 318.5 283 62.2
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 5.1e-85 318.5 289 59.5
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 6.7e-85 318.2 274 66.1
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 6.7e-85 318.2 287 63.8
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 4.3e-84 315.5 296 59.5
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 7.4e-84 314.7 296 60.1
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 3.7e-83 312.4 269 64.3
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 4.8e-83 312.0 291 60.8
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 6.3e-83 311.6 269 63.9
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 3.1e-82 309.3 269 63.6
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 5.3e-82 308.5 294 59.9
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 9.0e-82 307.8 253 66.8
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 9.0e-82 307.8 272 63.6
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 1.5e-81 307.0 287 59.9
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 2.0e-81 306.6 269 63.6
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 5.9e-81 305.1 293 61.1
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 7.6e-81 304.7 270 63.0
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 1.0e-80 304.3 293 60.1
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 2.2e-80 303.1 289 59.9
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 1.1e-79 300.8 288 58.0
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 1.1e-79 300.8 254 66.1
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 1.9e-79 300.1 300 56.7
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 1.9e-79 300.1 253 65.2
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 5.5e-79 298.5 279 57.3
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 7.2e-79 298.1 313 54.6
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 9.3e-79 297.7 280 57.5
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 4.3e-76 288.9 305 57.0
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.7e-75 285.8 265 61.5
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.4e-74 283.9 273 60.1
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.4e-74 283.9 273 60.1
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 2.6e-73 279.6 289 59.2
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.6e-70 270.4 217 65.4
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 2.7e-70 269.6 424 44.1
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 6.1e-70 268.5 293 56.3
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 2.6e-68 263.1 292 55.1
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 2.8e-67 259.6 188 70.2
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 4.8e-67 258.8 285 53.7
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 2.4e-66 256.5 254 59.4
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 3.1e-66 256.1 284 53.2
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 9.1e-66 254.6 184 71.2
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 1.2e-65 254.2 274 56.2
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 5.9e-65 251.9 283 52.7
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 1.4e-63 247.3 212 61.8
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 1.4e-63 247.3 272 55.9
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 7.2e-63 245.0 212 60.8
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 2.7e-62 243.0 290 53.4
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 7.4e-60 235.0 201 62.2
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 7.4e-60 235.0 185 64.9
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 1.7e-59 233.8 279 52.3
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 5.3e-58 228.8 277 52.7
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 7.0e-58 228.4 292 52.7
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 3.5e-57 226.1 276 52.2
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 7.7e-57 224.9 206 59.2
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 1.7e-56 223.8 291 49.8
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 1.9e-55 220.3 287 50.9
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 1.6e-54 217.2 240 55.4
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 6.1e-54 215.3 291 51.2
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 6.1e-54 215.3 291 51.2
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 2.3e-53 213.4 288 50.0
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 7.5e-52 208.4 213 59.6
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 1.7e-51 207.2 291 49.1
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 1.7e-51 207.2 291 49.1
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 1.7e-51 207.2 291 49.1
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 2.2e-51 206.8 263 51.3
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 5.3e-50 202.2 313 46.0
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 1.5e-47 194.1 251 47.4
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 6.1e-46 188.7 274 47.8
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 8.0e-46 188.3 251 46.6
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 1.0e-45 188.0 223 52.5
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 1.2e-44 184.5 293 43.3
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 3.7e-43 179.5 225 54.2
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 4.1e-42 176.0 200 52.5
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 1.6e-41 174.1 255 45.5
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 3.5e-41 172.9 305 41.6
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 2.6e-36 156.8 253 42.3
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 5.0e-32 142.5 160 51.2
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 3.3e-31 139.8 152 52.0
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.2e-30 137.9 206 44.7
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 1.4e-26 124.4 126 57.1
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 3.9e-24 116.3 243 40.3
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 4.9e-19 99.4 230 39.6
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 4.6e-17 92.8 227 37.9
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 7.8e-17 92.0 165 43.6
RcHm_v2.0_Chr7g0241891 Rosa chinensis HOM05D006128 ORTHO05D007466 1.1e-15 88.2 78 64.1
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 3.3e-15 86.7 132 48.5
SHI19767 Sapria himalayana HOM05D006128 ORTHO05D007466 3.7e-11 73.2 93 51.6
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 1.1e-10 71.6 78 55.1
Oeu047380.1 Olea europaea HOM05D006128 ORTHO05D007466 7.1e-10 68.9 100 44.0
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 1.3e-08 64.7 48 66.7
SEGI_18845 Sequoiadendron giganteum HOM05D006128 ORTHO05D007466 3.9e-08 63.2 123 39.0
BolC3t16090H Brassica oleracea HOM05D006128 ORTHO05D007466 1.1e-07 61.6 46 65.2
BraA03t12301Z Brassica rapa HOM05D006128 ORTHO05D007466 5.6e-07 59.3 43 67.4


User provided reference genes

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