Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 3.7e-310 1067.4 541 100.0
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 4.4e-247 857.8 535 80.7
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 1.1e-242 843.2 530 79.2
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 5.6e-242 840.9 529 79.6
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 3.7e-238 828.2 534 77.7
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 1.2e-236 823.2 536 76.1
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 2.0e-236 822.4 538 76.4
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 1.1e-234 816.6 537 75.4
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 3.6e-233 811.6 530 77.0
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 1.1e-232 810.1 536 75.4
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 1.1e-232 810.1 544 75.2
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 1.4e-232 809.7 534 76.6
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 1.4e-232 809.7 530 76.6
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 2.3e-232 808.9 536 75.7
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 6.8e-232 807.4 530 75.7
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 1.5e-231 806.2 551 74.6
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 1.7e-230 802.7 535 75.9
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 1.1e-229 800.0 533 76.0
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 2.4e-229 798.9 536 74.4
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 9.2e-229 797.0 538 74.0
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 1.2e-228 796.6 539 74.2
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 1.3e-227 793.1 529 75.2
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 1.3e-227 793.1 524 76.1
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 2.3e-227 792.3 529 75.0
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 3.3e-226 788.5 544 73.2
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 4.3e-226 788.1 531 74.2
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.6e-225 786.2 533 75.0
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 1.6e-225 786.2 529 74.7
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.8e-225 785.4 539 72.7
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 3.6e-225 785.0 538 73.6
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 4.7e-225 784.6 527 74.4
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 6.2e-225 784.3 538 73.4
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 8.1e-225 783.9 538 73.2
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 2.3e-224 782.3 538 73.4
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 2.3e-224 782.3 521 76.0
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 3.1e-224 781.9 538 73.0
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 3.1e-224 781.9 528 76.1
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 5.2e-224 781.2 540 74.1
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 6.8e-224 780.8 525 73.9
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 2.6e-223 778.9 525 74.3
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 4.4e-223 778.1 535 73.6
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 1.7e-222 776.2 525 73.3
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.4e-221 773.1 532 74.4
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 1.9e-221 772.7 529 74.1
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 3.2e-221 771.9 525 73.7
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 4.1e-221 771.5 535 73.1
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 4.1e-221 771.5 532 73.7
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 9.2e-221 770.4 530 74.5
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 1.6e-220 769.6 537 73.0
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 2.1e-220 769.2 526 74.5
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 2.1e-220 769.2 591 67.9
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 3.5e-220 768.5 524 73.7
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 4.6e-220 768.1 534 73.8
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 1.2e-217 760.0 562 70.3
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 8.1e-217 757.3 534 72.8
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 1.4e-216 756.5 533 72.0
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 1.4e-216 756.5 525 73.1
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 1.2e-215 753.4 543 71.6
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 1.5e-215 753.1 540 70.9
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 5.8e-215 751.1 543 71.6
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 1.3e-214 750.0 537 70.6
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 2.9e-214 748.8 525 72.0
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 6.4e-214 747.7 536 70.5
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 8.4e-214 747.3 525 73.1
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 5.4e-213 744.6 541 70.4
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 7.1e-213 744.2 542 68.5
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 9.3e-213 743.8 527 72.7
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 2.7e-212 742.3 556 68.7
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 3.5e-212 741.9 541 69.9
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 3.5e-212 741.9 541 69.9
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 4.6e-212 741.5 541 70.2
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 7.8e-212 740.7 524 72.3
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 5.1e-211 738.0 524 71.8
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 6.6e-211 737.6 513 72.1
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 8.7e-211 737.3 520 72.1
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 1.1e-210 736.9 537 69.6
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 2.8e-209 732.3 490 76.3
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 3.8e-206 721.8 524 69.8
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 5.4e-205 718.0 501 73.5
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 5.4e-205 718.0 553 68.0
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 6.0e-204 714.5 524 70.0
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 2.3e-203 712.6 524 69.1
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 3.0e-203 712.2 525 69.5
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 1.9e-202 709.5 518 68.5
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 5.6e-202 708.0 521 69.1
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 2.1e-201 706.1 521 68.9
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 4.0e-200 701.8 474 72.4
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 2.6e-199 699.1 530 66.6
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 5.8e-199 698.0 498 70.7
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 1.7e-198 696.4 529 66.5
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 8.4e-198 694.1 487 73.1
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 4.0e-192 675.2 526 66.2
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 5.8e-191 671.4 533 66.2
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 6.7e-187 657.9 586 63.0
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 7.4e-186 654.4 550 62.5
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 3.6e-180 635.6 508 66.1
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 1.1e-178 630.6 411 76.2
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 3.9e-171 605.5 409 75.3
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 5.9e-167 591.7 407 74.4
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 4.3e-125 452.6 541 49.0
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.2e-124 451.1 524 49.8
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 1.4e-123 447.6 353 68.0
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 5.0e-118 429.1 303 69.6
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 1.4e-112 411.0 529 45.2
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 3.2e-112 409.8 547 43.5
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 2.7e-111 406.8 262 76.0
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 5.2e-107 392.5 291 66.7
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 5.2e-107 392.5 265 74.0
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 1.2e-106 391.3 535 41.9
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 1.2e-103 381.3 553 41.4
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 3.3e-101 373.2 538 39.6
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 7.6e-98 362.1 317 59.6
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 4.3e-85 319.7 424 43.6
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 6.7e-78 295.8 174 82.2
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 4.5e-74 283.1 316 53.5
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 1.9e-69 267.7 619 31.2
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 2.9e-57 227.3 226 56.2
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.5e-56 224.2 276 47.5
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 9.4e-56 222.2 152 72.4
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 5.7e-53 213.0 162 67.3
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.2e-47 195.3 99 91.9
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 4.7e-47 193.4 174 58.0
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 9.7e-45 185.7 704 26.8
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 4.2e-40 170.2 131 67.9
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.8e-38 164.9 115 70.4
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 8.0e-31 139.4 97 69.1
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.0e-30 139.0 123 57.7
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 2.3e-25 121.3 179 38.0
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 2.9e-25 120.9 83 72.3
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 7.5e-21 106.3 93 57.0
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.3e-17 95.5 104 50.0
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 5.6e-16 90.1 51 88.2
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 1.5e-08 65.5 121 34.7
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 1.6e-07 62.0 52 67.3


User provided reference genes

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