Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G218700 Manihot esculenta HOM05D002674 ORTHO05D008041 3.1e-48 194.9 105 100.0
Ciclev10022953m.g Citrus clementina HOM05D002674 ORTHO05D008041 3.8e-38 161.4 103 81.6
Dinv19696 Davidia involucrata HOM05D002674 ORTHO05D008041 1.9e-37 159.1 101 82.2
Thecc.01G300000 Theobroma cacao HOM05D002674 ORTHO05D008041 3.2e-37 158.3 102 79.4
COL.COLO4_23349 Corchorus olitorius HOM05D002674 ORTHO05D008041 4.2e-37 157.9 102 80.4
Oeu048338.1 Olea europaea HOM05D002674 ORTHO05D008041 4.2e-37 157.9 105 77.1
TAR636G2182 Trochodendron aralioides HOM05D002674 ORTHO05D008041 4.2e-37 157.9 102 79.4
TWI14G1447 Tripterygium wilfordii HOM05D002674 ORTHO05D008041 5.5e-37 157.5 102 82.4
ECA247G1692 Erigeron canadensis HOM05D002674 ORTHO05D008041 9.4e-37 156.8 102 78.4
Cc01_g20820 Coffea canephora HOM05D002674 ORTHO05D008041 1.2e-36 156.4 100 80.0
Potri.014G129800 Populus trichocarpa HOM05D002674 ORTHO05D008041 1.2e-36 156.4 102 80.4
Sp5g00710 Schrenkiella parvula HOM05D002674 ORTHO05D008041 1.2e-36 156.4 103 80.6
TWI23G1311 Tripterygium wilfordii HOM05D002674 ORTHO05D008041 1.2e-36 156.4 102 80.4
HanXRQChr15g0465661 Helianthus annuus HOM05D002674 ORTHO05D008041 2.1e-36 155.6 101 79.2
BcaC02g10314 Brassica carinata HOM05D002674 ORTHO05D008041 2.7e-36 155.2 99 79.8
A04p00510 Brassica napus HOM05D002674 ORTHO05D008041 2.7e-36 155.2 99 79.8
BolC4t24576H Brassica oleracea HOM05D002674 ORTHO05D008041 2.7e-36 155.2 99 79.8
BraA04t15771Z Brassica rapa HOM05D002674 ORTHO05D008041 2.7e-36 155.2 99 79.8
Gohir.D08G085400 Gossypium hirsutum HOM05D002674 ORTHO05D008041 2.7e-36 155.2 100 80.0
Gohir.A08G076000 Gossypium hirsutum HOM05D002674 ORTHO05D008041 3.6e-36 154.8 100 79.0
Carub.0005s2947 Capsella rubella HOM05D002674 ORTHO05D008041 4.7e-36 154.5 103 79.6
BcaC07g42733 Brassica carinata HOM05D002674 ORTHO05D008041 1.0e-35 153.3 107 79.4
C04p30420 Brassica napus HOM05D002674 ORTHO05D008041 1.0e-35 153.3 103 79.6
Cpa.g.sc9.264 Carica papaya HOM05D002674 ORTHO05D008041 1.4e-35 152.9 102 79.4
AT3G62810 Arabidopsis thaliana HOM05D002674 ORTHO05D008041 1.8e-35 152.5 103 79.6
AL5G45590 Arabidopsis lyrata HOM05D002674 ORTHO05D008041 3.0e-35 151.8 103 79.6
Thhalv10006327m.g Eutrema salsugineum HOM05D002674 ORTHO05D008041 3.0e-35 151.8 107 78.5
MSTRG.21632 Avicennia marina HOM05D002674 ORTHO05D008041 3.9e-35 151.4 105 74.3
RcHm_v2.0_Chr6g0293971 Rosa chinensis HOM05D002674 ORTHO05D008041 5.1e-35 151.0 100 80.0
SGA_v2.0_scaffold2G01395 Striga asiatica HOM05D002674 ORTHO05D008041 6.7e-35 150.6 105 76.2
Sabra02G0154500 Salix brachista HOM05D002674 ORTHO05D008041 1.1e-34 149.8 102 76.5
Atru.chr5.1150 Acer truncatum HOM05D002674 ORTHO05D008041 1.5e-34 149.4 100 76.0
Atru.chr7.1564 Acer truncatum HOM05D002674 ORTHO05D008041 1.5e-34 149.4 102 74.5
Aa31LG10G16570 Aethionema arabicum HOM05D002674 ORTHO05D008041 1.5e-34 149.4 103 75.7
Hund18156 Selenicereus undatus HOM05D002674 ORTHO05D008041 1.5e-34 149.4 101 75.2
FvH4_2g25692 Fragaria vesca HOM05D002674 ORTHO05D008041 3.3e-34 148.3 100 79.0
SalBow3G0298 Salvia bowleyana HOM05D002674 ORTHO05D008041 3.3e-34 148.3 99 76.8
BcaB02g08097 Brassica carinata HOM05D002674 ORTHO05D008041 4.4e-34 147.9 99 76.8
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 4.4e-34 147.9 102 75.5
Prupe.8G261100 Prunus persica HOM05D002674 ORTHO05D008041 4.4e-34 147.9 100 78.0
CiPaw.07G108500 Carya illinoinensis HOM05D002674 ORTHO05D008041 5.7e-34 147.5 98 77.6
AUR62008625 Chenopodium quinoa HOM05D002674 ORTHO05D008041 7.4e-34 147.1 105 74.3
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 9.7e-34 146.7 102 75.5
FvH4_3g17380 Fragaria vesca HOM05D002674 ORTHO05D008041 1.3e-33 146.4 99 77.8
FAN11G2206 Fragaria x ananassa HOM05D002674 ORTHO05D008041 1.3e-33 146.4 99 77.8
FAN21G2416 Fragaria x ananassa HOM05D002674 ORTHO05D008041 1.3e-33 146.4 99 77.8
BraA09t40877Z Brassica rapa HOM05D002674 ORTHO05D008041 2.2e-33 145.6 107 78.5
ClCG10G010910 Citrullus lanatus HOM05D002674 ORTHO05D008041 2.2e-33 145.6 105 72.4
CARHR173080 Cardamine hirsuta HOM05D002674 ORTHO05D008041 2.8e-33 145.2 103 76.7
AUR62033146 Chenopodium quinoa HOM05D002674 ORTHO05D008041 3.7e-33 144.8 105 73.3
FAN16G1943 Fragaria x ananassa HOM05D002674 ORTHO05D008041 3.7e-33 144.8 99 76.8
Actinidia32214 Actinidia chinensis HOM05D002674 ORTHO05D008041 4.8e-33 144.4 102 74.5
FAN25G1445 Fragaria x ananassa HOM05D002674 ORTHO05D008041 6.3e-33 144.1 99 76.8
MELO3C017957.2 Cucumis melo HOM05D002674 ORTHO05D008041 8.2e-33 143.7 103 71.8
MBI19_g25355_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D008041 8.2e-33 143.7 99 75.8
GSVIVG01028011001 Vitis vinifera HOM05D002674 ORTHO05D008041 8.2e-33 143.7 100 75.0
CsaV3_4G000790 Cucumis sativus L. HOM05D002674 ORTHO05D008041 1.1e-32 143.3 103 70.9
CSS0018179 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D008041 1.4e-32 142.9 102 71.6
A09p54660 Brassica napus HOM05D002674 ORTHO05D008041 1.8e-32 142.5 107 76.6
Nn3g21482 Nelumbo nucifera HOM05D002674 ORTHO05D008041 2.4e-32 142.1 102 73.5
QL12p028510 Quercus lobata HOM05D002674 ORTHO05D008041 2.4e-32 142.1 98 76.5
Sed0019690 Sechium edule HOM05D002674 ORTHO05D008041 2.4e-32 142.1 103 72.8
Migut.D00216 Erythranthe guttata HOM05D002674 ORTHO05D008041 3.1e-32 141.7 105 69.5
EL10Ac7g17468 Beta vulgaris HOM05D002674 ORTHO05D008041 9.1e-32 140.2 102 71.6
CDE12G0521 Ceratophyllum demersum HOM05D002674 ORTHO05D008041 1.6e-31 139.4 102 71.6
PGR044G1069 Punica granatum HOM05D002674 ORTHO05D008041 1.6e-31 139.4 100 72.0
Rhsim13G0010400 Rhododendron simsii HOM05D002674 ORTHO05D008041 2.0e-31 139.0 118 66.1
Haze_04934 Corylus avellana HOM05D002674 ORTHO05D008041 2.6e-31 138.7 98 72.4
MD11G1310400 Malus domestica HOM05D002674 ORTHO05D008041 3.5e-31 138.3 98 72.4
Cfa005915 Carpinus fangiana HOM05D002674 ORTHO05D008041 4.5e-31 137.9 98 71.4
Nitab4.5_0008207g0030 Nicotiana tabacum HOM05D002674 ORTHO05D008041 5.9e-31 137.5 102 70.6
CANSAT25G0502 Cannabis sativa HOM05D002674 ORTHO05D008041 7.7e-31 137.1 100 71.0
unitig_61.g26303 Utricularia gibba HOM05D002674 ORTHO05D008041 7.7e-31 137.1 103 68.9
Ca_10338_v3 Cicer arietinum L. HOM05D002674 ORTHO05D008041 1.3e-30 136.3 101 71.3
Nitab4.5_0001879g0010 Nicotiana tabacum HOM05D002674 ORTHO05D008041 2.2e-30 135.6 100 70.0
Peaxi162Scf00001g00445 Petunia axillaris HOM05D002674 ORTHO05D008041 2.9e-30 135.2 102 68.6
PGR119G0614 Punica granatum HOM05D002674 ORTHO05D008041 2.9e-30 135.2 98 72.4
MD03G1287900 Malus domestica HOM05D002674 ORTHO05D008041 3.8e-30 134.8 98 71.4
Psat6g166360 Pisum sativum HOM05D002674 ORTHO05D008041 3.8e-30 134.8 101 70.3
CAN.G472.1 Capsicum annuum HOM05D002674 ORTHO05D008041 5.0e-30 134.4 102 68.6
Aqoxy5G00753 Aquilegia oxysepala HOM05D002674 ORTHO05D008041 8.5e-30 133.7 101 70.3
Solyc09g075100.3 Solanum lycopersicum HOM05D002674 ORTHO05D008041 8.5e-30 133.7 102 68.6
Sopen09g029920 Solanum pennellii HOM05D002674 ORTHO05D008041 8.5e-30 133.7 102 68.6
VMungo0720G1979 Vigna mungo HOM05D002674 ORTHO05D008041 2.5e-29 132.1 101 69.3
Phvul.007G146200 Phaseolus vulgaris HOM05D002674 ORTHO05D008041 3.2e-29 131.7 101 68.3
PGSC0003DMG400011376 Solanum tuberosum HOM05D002674 ORTHO05D008041 3.2e-29 131.7 102 67.6
Eucgr.H01115 Eucalyptus grandis HOM05D002674 ORTHO05D008041 9.4e-29 130.2 102 63.7
Lj5g0008305 Lotus japonicus HOM05D002674 ORTHO05D008041 2.7e-28 128.6 101 66.3
ATR0796G030 Amborella trichopoda HOM05D002674 ORTHO05D008041 6.1e-28 127.5 103 62.1
Lalb_Chr21g0306851 Lupinus albus HOM05D002674 ORTHO05D008041 1.4e-27 126.3 101 66.3
arahy.Tifrunner.gnm1.ann1.9NAT9F Arachis hypogaea HOM05D002674 ORTHO05D008041 3.0e-27 125.2 101 66.3
arahy.Tifrunner.gnm1.ann1.UV7MYU Arachis hypogaea HOM05D002674 ORTHO05D008041 3.0e-27 125.2 101 66.3
PSO210G6076 Papaver somniferum HOM05D002674 ORTHO05D008041 5.2e-27 124.4 102 62.7
PSO832G1306 Papaver somniferum HOM05D002674 ORTHO05D008041 6.7e-27 124.0 102 63.7
Oeu010670.1 Olea europaea HOM05D002674 ORTHO05D008041 2.0e-26 122.5 105 64.8
Sabra14G0096400 Salix brachista HOM05D002674 ORTHO05D008041 2.0e-26 122.5 96 65.6
Gorai.004G089900 Gossypium raimondii HOM05D002674 ORTHO05D008041 3.3e-26 121.7 76 85.5
vmacro02452 Vaccinium macrocarpon HOM05D002674 ORTHO05D008041 4.4e-26 121.3 155 50.3
Duzib138G1033 Durio zibethinus HOM05D002674 ORTHO05D008041 5.7e-26 120.9 76 84.2
Lsat_1_v5_gn_9_5640 Lactuca sativa HOM05D002674 ORTHO05D008643 5.7e-26 120.9 79 79.7
Medtr1g088550 Medicago truncatula HOM05D002674 ORTHO05D008041 7.5e-26 120.6 101 61.4
Glyma.10G018500 Glycine max HOM05D002674 ORTHO05D008041 1.3e-25 119.8 103 62.1
TPR.G34008 Trifolium pratense HOM05D002674 ORTHO05D008041 1.3e-25 119.8 101 64.4
SEGI_38702 Sequoiadendron giganteum HOM05D002674 ORTHO05D008041 2.2e-25 119.0 105 57.1
SalBow5G2922 Salvia bowleyana HOM05D002674 ORTHO05D008041 1.2e-23 113.2 77 76.6
CDE01G0164 Ceratophyllum demersum HOM05D002674 ORTHO05D008041 2.0e-23 112.5 86 69.8
SalBow3G1515 Salvia bowleyana HOM05D002674 ORTHO05D008041 2.0e-23 112.5 75 77.3
C08p37560 Brassica napus HOM05D002674 ORTHO05D008041 2.9e-22 108.6 74 75.7
Sc24g0003780 Simmondsia chinensis HOM05D002674 ORTHO05D008041 5.0e-22 107.8 76 75.0
Haze_04957 Corylus avellana HOM05D002674 ORTHO05D008041 1.9e-21 105.9 76 73.7
Lalb_Chr02g0143261 Lupinus albus HOM05D000266 ORTHO05D008041 7.2e-21 104.0 95 60.0
Hma1.2p1_0491F.1_g164520 Hydrangea macrophylla HOM05D002674 ORTHO05D008041 1.2e-20 103.2 74 71.6
DCAR_002831 Daucus carota HOM05D000067 ORTHO05D001807 6.1e-20 100.9 83 67.5
Ah.15g093210 Amaranthus hybridus HOM05D002674 ORTHO05D008041 1.4e-19 99.8 79 68.4
Mapoly0061s0038 Marchantia polymorpha HOM05D002674 ORTHO05D008041 4.0e-19 98.2 102 50.0
Os05g0363600 Oryza sativa ssp. japonica HOM05D002674 ORTHO05D008041 2.0e-18 95.9 100 54.0
Pp3c9_7930 Physcomitrium patens HOM05D002674 ORTHO05D008041 1.7e-17 92.8 99 52.5
Zm00001eb346590 Zea mays HOM05D002674 ORTHO05D008041 1.7e-17 92.8 100 52.0
Glyma.02G018200 Glycine max HOM05D002674 ORTHO05D008041 2.8e-17 92.0 75 66.7
HPP92_013721 Vanilla planifolia HOM05D002674 ORTHO05D008041 4.8e-17 91.3 79 60.8
AagrBONN_evm.TU.Sc2ySwM_362.373 Anthoceros agrestis HOM05D002674 ORTHO05D008041 1.4e-16 89.7 100 49.0
BcaC07g40760 Brassica carinata HOM05D002674 ORTHO05D008041 6.5e-14 80.9 52 73.1
BolC8t51336H Brassica oleracea HOM05D002674 ORTHO05D008041 6.5e-14 80.9 52 73.1
CBR_g24042 Chara braunii HOM05D002674 ORTHO05D008041 4.2e-13 78.2 104 42.3
RcHm_v2.0_Chr2g0146991 Rosa chinensis HOM05D002674 ORTHO05D008041 4.7e-12 74.7 54 75.9
MCO07G465 Micromonas commoda HOM05D002674 ORTHO05D008041 4.4e-10 68.2 93 39.8
Peaxi162Scf00545g00027 Petunia axillaris HOM05D002674 ORTHO05D008041 2.8e-09 65.5 50 62.0
PSO832G3862 Papaver somniferum HOM05D001297 ORTHO05D001135 7.7e-07 57.4 79 45.6


User provided reference genes

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