Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G217700 Manihot esculenta HOM05D005667 ORTHO05D007299 2.5e-214 748.4 359 100.0
Potri.002G205600 Populus trichocarpa HOM05D005667 ORTHO05D007299 5.4e-169 597.8 388 77.3
Potri.014G130600 Populus trichocarpa HOM05D005667 ORTHO05D007299 5.8e-163 577.8 384 74.7
Thecc.01G298400 Theobroma cacao HOM05D005667 ORTHO05D007299 7.9e-160 567.4 391 71.4
Atru.chr5.1169 Acer truncatum HOM05D005667 ORTHO05D007299 2.5e-158 562.4 386 72.5
QL12p027280 Quercus lobata HOM05D005667 ORTHO05D007299 2.1e-157 559.3 394 69.0
COL.COLO4_23365 Corchorus olitorius HOM05D005667 ORTHO05D007299 1.8e-156 556.2 391 69.8
QL12p026655 Quercus lobata HOM05D005667 ORTHO05D007299 3.4e-155 552.0 394 68.3
CiPaw.07G107100 Carya illinoinensis HOM05D005667 ORTHO05D007299 1.4e-153 546.6 388 67.8
Dinv33042 Davidia involucrata HOM05D005667 ORTHO05D007299 1.2e-152 543.5 387 69.0
Sabra14G0097200 Salix brachista HOM05D005667 ORTHO05D007299 1.2e-152 543.5 385 70.9
Actinidia32226 Actinidia chinensis HOM05D005667 ORTHO05D007299 2.7e-152 542.3 387 69.0
Hma1.2p1_0209F.1_g088490 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 2.7e-152 542.3 388 69.6
Sabra02G0153700 Salix brachista HOM05D005667 ORTHO05D007299 1.0e-151 540.4 415 68.0
TAR365G0445 Trochodendron aralioides HOM05D005667 ORTHO05D007299 8.7e-151 537.3 386 68.1
Duzib138G1280 Durio zibethinus HOM05D005667 ORTHO05D007299 1.1e-150 537.0 385 67.8
CSS0019258 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 5.7e-150 534.6 387 68.7
Cfa005935 Carpinus fangiana HOM05D005667 ORTHO05D007299 5.7e-150 534.6 388 68.0
TAR627G0762 Trochodendron aralioides HOM05D005667 ORTHO05D007299 2.2e-149 532.7 388 67.5
MD03G1286100 Malus domestica HOM05D005667 ORTHO05D007299 5.3e-148 528.1 386 67.6
TWI23G0451 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 1.7e-146 523.1 390 68.2
CANSAT25G0856 Cannabis sativa HOM05D005667 ORTHO05D007299 2.2e-146 522.7 386 66.1
TWI59G1070 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 5.0e-146 521.5 394 67.8
Haze_04910 Corylus avellana HOM05D005667 ORTHO05D007299 8.5e-146 520.8 419 63.7
MD11G1306000 Malus domestica HOM05D005667 ORTHO05D007299 1.4e-145 520.0 386 67.1
vmacro14998 Vaccinium macrocarpon HOM05D005667 ORTHO05D007299 1.9e-145 519.6 391 65.5
Nn4g25820 Nelumbo nucifera HOM05D005667 ORTHO05D007299 3.2e-145 518.8 384 66.7
Hund18138 Selenicereus undatus HOM05D005667 ORTHO05D007299 3.2e-145 518.8 389 65.3
VMungo1383G3519 Vigna mungo HOM05D005667 ORTHO05D007299 3.2e-145 518.8 388 67.0
Phvul.001G206300 Phaseolus vulgaris HOM05D005667 ORTHO05D007299 7.2e-145 517.7 388 66.2
Eucgr.K03468 Eucalyptus grandis HOM05D005667 ORTHO05D007299 1.4e-143 513.5 399 63.2
Glyma.03G213700 Glycine max HOM05D005667 ORTHO05D007299 1.1e-142 510.4 390 64.4
Ciclev10020175m.g Citrus clementina HOM05D005667 ORTHO05D007299 2.5e-142 509.2 425 62.1
CsaV3_4G000700 Cucumis sativus L. HOM05D005667 ORTHO05D007299 4.3e-142 508.4 391 62.9
Carub.0004s3050 Capsella rubella HOM05D005667 ORTHO05D007299 7.4e-142 507.7 389 64.5
MSTRG.21625 Avicennia marina HOM05D005667 ORTHO05D007299 9.7e-142 507.3 383 65.0
TPR.G9636 Trifolium pratense HOM05D005667 ORTHO05D007299 1.3e-141 506.9 393 64.1
arahy.Tifrunner.gnm1.ann1.P0XQ2X Arachis hypogaea HOM05D005667 ORTHO05D007299 2.2e-141 506.1 392 64.0
SGA_v2.0_scaffold2G01401 Striga asiatica HOM05D005667 ORTHO05D007299 2.2e-141 506.1 389 64.3
MELO3C017966.2 Cucumis melo HOM05D005667 ORTHO05D007299 3.7e-141 505.4 391 62.9
CARHR143160 Cardamine hirsuta HOM05D005667 ORTHO05D007299 4.8e-141 505.0 396 64.4
Psat3g021960 Pisum sativum HOM05D005667 ORTHO05D007299 4.8e-141 505.0 396 63.9
Aqoxy2G02973 Aquilegia oxysepala HOM05D005667 ORTHO05D007299 6.3e-141 504.6 401 63.1
Lj1g0013419 Lotus japonicus HOM05D005667 ORTHO05D007299 8.2e-141 504.2 394 63.5
THA.LOC104817511 Tarenaya hassleriana HOM05D005667 ORTHO05D007299 1.8e-140 503.1 397 63.2
Lalb_Chr04g0259821 Lupinus albus HOM05D005667 ORTHO05D007299 2.4e-140 502.7 379 65.7
Glyma.19G210500 Glycine max HOM05D005667 ORTHO05D007299 3.1e-140 502.3 390 63.3
FvH4_2g25530 Fragaria vesca HOM05D005667 ORTHO05D007299 9.1e-140 500.7 374 67.6
Medtr7g108870 Medicago truncatula HOM05D005667 ORTHO05D007299 2.6e-139 499.2 384 65.1
Medtr8g058590 Medicago truncatula HOM05D005667 ORTHO05D007299 2.6e-139 499.2 384 65.1
Thhalv10001494m.g Eutrema salsugineum HOM05D005667 ORTHO05D007299 4.5e-139 498.4 392 64.8
Ca_09151_v3 Cicer arietinum L. HOM05D005667 ORTHO05D007299 5.9e-139 498.0 395 63.3
arahy.Tifrunner.gnm1.ann1.AQSE8X Arachis hypogaea HOM05D005667 ORTHO05D007299 1.3e-138 496.9 392 63.3
Gohir.D12G135100 Gossypium hirsutum HOM05D005667 ORTHO05D007299 1.3e-138 496.9 387 64.3
AT2G47790 Arabidopsis thaliana HOM05D005667 ORTHO05D007299 1.7e-138 496.5 395 63.3
Sed0014922 Sechium edule HOM05D005667 ORTHO05D007299 2.5e-137 492.7 374 63.1
Sp4g29720 Schrenkiella parvula HOM05D005667 ORTHO05D007299 3.2e-137 492.3 396 62.1
Lalb_Chr18g0047071 Lupinus albus HOM05D005667 ORTHO05D007299 4.2e-137 491.9 394 63.2
Sc05g0004030 Simmondsia chinensis HOM05D005667 ORTHO05D007299 9.4e-137 490.7 391 63.7
AL4G47370 Arabidopsis lyrata HOM05D005667 ORTHO05D007299 1.6e-136 490.0 394 63.5
Aa31LG1G29130 Aethionema arabicum HOM05D005667 ORTHO05D007299 7.9e-136 487.6 400 62.0
Nitab4.5_0002469g0040 Nicotiana tabacum HOM05D005667 ORTHO05D007299 1.0e-135 487.3 391 63.2
Migut.D00204 Erythranthe guttata HOM05D005667 ORTHO05D007299 2.3e-135 486.1 393 61.1
Gohir.A12G131200 Gossypium hirsutum HOM05D005667 ORTHO05D007299 8.8e-135 484.2 387 62.8
DCAR_005798 Daucus carota HOM05D005667 ORTHO05D007299 2.0e-134 483.0 385 62.1
Sopen09g029820 Solanum pennellii HOM05D005667 ORTHO05D007299 3.3e-134 482.3 390 62.6
Solyc09g075000.3 Solanum lycopersicum HOM05D005667 ORTHO05D007299 1.3e-133 480.3 390 62.6
FAN20G0834 Fragaria x ananassa HOM05D005667 ORTHO05D007299 1.7e-133 479.9 371 65.5
Gorai.008G146100 Gossypium raimondii HOM05D005667 ORTHO05D007299 3.7e-133 478.8 387 62.8
Ah.08g213150 Amaranthus hybridus HOM05D005667 ORTHO05D007299 6.3e-133 478.0 393 60.3
HanXRQChr04g0118041 Helianthus annuus HOM05D005667 ORTHO05D007299 1.1e-132 477.2 389 62.5
PGSC0003DMG400011397 Solanum tuberosum HOM05D005667 ORTHO05D007299 1.1e-132 477.2 390 61.5
SalBow3G0511 Salvia bowleyana HOM05D005667 ORTHO05D007299 1.8e-132 476.5 371 62.3
PSO210G4429 Papaver somniferum HOM05D005667 ORTHO05D007299 5.9e-131 471.5 390 61.8
Lsat_1_v5_gn_8_53441 Lactuca sativa HOM05D005667 ORTHO05D007299 2.2e-130 469.5 400 60.8
GSVIVG01027987001 Vitis vinifera HOM05D005667 ORTHO05D007299 3.8e-130 468.8 339 68.4
A04p35070 Brassica napus HOM05D005667 ORTHO05D007299 6.5e-130 468.0 385 61.6
PSO170G6061 Papaver somniferum HOM05D005667 ORTHO05D007299 2.5e-129 466.1 374 62.6
C04p72980 Brassica napus HOM05D005667 ORTHO05D007299 4.2e-129 465.3 385 61.0
Prupe.8G259400 Prunus persica HOM05D005667 ORTHO05D007299 5.5e-129 464.9 341 67.4
BraA04t18943Z Brassica rapa HOM05D005667 ORTHO05D007299 1.2e-128 463.8 386 61.1
BcaB06g29498 Brassica carinata HOM05D005667 ORTHO05D007299 2.7e-128 462.6 408 58.8
BolC4t28779H Brassica oleracea HOM05D005667 ORTHO05D007299 2.7e-128 462.6 385 61.0
AUR62008656 Chenopodium quinoa HOM05D005667 ORTHO05D007299 1.0e-127 460.7 362 61.9
AUR62033112 Chenopodium quinoa HOM05D005667 ORTHO05D007299 3.0e-127 459.1 363 61.2
EL10Ac7g17451 Beta vulgaris HOM05D005667 ORTHO05D007299 3.3e-126 455.7 361 61.8
Cc01_g20730 Coffea canephora HOM05D005667 ORTHO05D007299 9.7e-126 454.1 424 55.0
CDE08G0318 Ceratophyllum demersum HOM05D005667 ORTHO05D007299 2.6e-123 446.0 383 56.7
Nitab4.5_0005515g0060 Nicotiana tabacum HOM05D005667 ORTHO05D007299 7.7e-123 444.5 391 59.6
BcaC02g06992 Brassica carinata HOM05D005667 ORTHO05D007299 1.7e-122 443.4 359 61.3
PGR044G1684 Punica granatum HOM05D005667 ORTHO05D007299 2.2e-122 443.0 387 58.1
ATR0796G332 Amborella trichopoda HOM05D005667 ORTHO05D007299 5.0e-122 441.8 382 57.9
Hma1.2p1_0209F.1_g088500 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 5.5e-121 438.3 427 55.0
ClCG10G010830 Citrullus lanatus HOM05D005667 ORTHO05D007299 9.4e-121 437.6 391 57.3
unitig_0.g1174 Utricularia gibba HOM05D005667 ORTHO05D007299 1.2e-120 437.2 422 54.3
HPP92_027132 Vanilla planifolia HOM05D005667 ORTHO05D007299 6.1e-120 434.9 376 55.9
Lj1C26T7 Lonicera japonica HOM05D005667 ORTHO05D007299 1.5e-118 430.3 321 65.7
Rhsim01G0284200 Rhododendron simsii HOM05D005667 ORTHO05D007299 1.5e-118 430.3 390 57.9
SHI15190 Sapria himalayana HOM05D005667 ORTHO05D007299 4.8e-117 425.2 395 58.7
Peaxi162Scf00001g00492 Petunia axillaris HOM05D005667 ORTHO05D007299 2.9e-114 416.0 344 60.2
Actinidia24829 Actinidia chinensis HOM05D005667 ORTHO05D007299 8.5e-114 414.5 362 57.7
ECA236G1571 Erigeron canadensis HOM05D005667 ORTHO05D007299 1.9e-113 413.3 339 60.5
CSS0024566 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 5.7e-110 401.7 384 54.7
CSS0050073 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 4.8e-109 398.7 384 54.4
SEGI_23788 Sequoiadendron giganteum HOM05D005667 ORTHO05D007299 1.2e-104 384.0 381 52.5
Dinv19706 Davidia involucrata HOM05D005667 ORTHO05D007299 4.9e-101 372.1 262 70.6
Sc05g0001380 Simmondsia chinensis HOM05D005667 ORTHO05D007299 2.4e-100 369.8 302 60.6
Cpa.g.sc9.222 Carica papaya HOM05D005667 ORTHO05D007299 1.7e-93 347.1 276 64.1
Pp3c11_14960 Physcomitrium patens HOM05D005667 ORTHO05D007299 1.7e-82 310.5 384 43.5
Medtr8g058557 Medicago truncatula HOM05D005667 ORTHO05D007299 3.3e-81 306.2 232 67.7
Pp3c2_26100 Physcomitrium patens HOM05D005667 ORTHO05D007299 2.1e-80 303.5 385 43.1
SMO329G0065 Selaginella moellendorffii HOM05D005667 ORTHO05D007299 1.4e-79 300.8 348 46.8
RcHm_v2.0_Chr6g0293741 Rosa chinensis HOM05D005667 ORTHO05D007299 3.0e-74 283.1 200 70.0
BcaB06g29495 Brassica carinata HOM05D005667 ORTHO05D007299 1.1e-73 281.2 278 52.9
Mapoly0153s0027 Marchantia polymorpha HOM05D005667 ORTHO05D007299 7.3e-73 278.5 386 39.9
Nn3g21456 Nelumbo nucifera HOM05D005667 ORTHO05D007299 1.4e-68 264.2 290 51.4
HPP92_021590 Vanilla planifolia HOM05D005667 ORTHO05D007299 1.3e-66 257.7 258 51.6
Pp3c11_15090 Physcomitrium patens HOM05D005667 ORTHO05D007299 1.1e-60 238.0 327 40.4
Actinidia21054 Actinidia chinensis HOM05D005667 ORTHO05D007299 2.0e-54 217.2 152 62.5
Oeu011452.2 Olea europaea HOM05D005667 ORTHO05D007299 5.1e-50 202.6 149 67.8
AagrBONN_evm.TU.Sc2ySwM_344.2785 Anthoceros agrestis HOM05D005667 ORTHO05D007299 4.0e-47 193.0 232 45.3
Zm00001eb157470 Zea mays HOM05D005667 ORTHO05D007299 4.0e-47 193.0 205 47.8
RcHm_v2.0_Chr6g0293751 Rosa chinensis HOM05D005667 ORTHO05D007299 1.2e-43 181.4 132 66.7
Cre03.g178050 Chlamydomonas reinhardtii HOM05D005667 ORTHO05D007299 3.9e-42 176.4 360 33.3
Os12g0294100 Oryza sativa ssp. japonica HOM05D005667 ORTHO05D007299 1.1e-39 168.3 190 48.4
BcaC02g06993 Brassica carinata HOM05D005667 ORTHO05D007299 1.4e-39 167.9 121 69.4
MCO09G319 Micromonas commoda HOM05D005667 ORTHO05D007299 6.1e-27 125.9 343 30.6
PRCOL_00003266 Prasinoderma coloniale HOM05D005667 ORTHO05D007299 1.5e-25 121.3 334 28.4
CBR_g34279 Chara braunii HOM05D005667 ORTHO05D007299 2.0e-17 94.4 125 40.0
Migut.G00109 Erythranthe guttata HOM05D005667 ORTHO05D007299 2.0e-14 84.3 66 63.6
Migut.D00125 Erythranthe guttata HOM05D005667 ORTHO05D007299 4.5e-14 83.2 152 35.5
CBR_g31107 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-13 81.3 137 34.3
CBR_g31109 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-08 65.1 69 42.0
Actinidia13473 Actinidia chinensis HOM05D005667 ORTHO05D000474 1.7e-08 64.7 78 48.7
Prupe.8G259600 Prunus persica HOM05D005667 ORTHO05D007299 4.8e-08 63.2 42 76.2


User provided reference genes

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