Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G217100 Manihot esculenta HOM05D003821 ORTHO05D004449 7.2e-22 107.1 89 100.0
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.1e-14 83.2 90 55.6
Thecc.01G297100 Theobroma cacao HOM05D003821 ORTHO05D004449 1.2e-13 79.7 90 86.7
Ciclev10023083m.g Citrus clementina HOM05D003821 ORTHO05D004449 1.6e-13 79.3 86 87.2
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 4.7e-13 77.8 89 51.7
Duzib133G0834 Durio zibethinus HOM05D003821 ORTHO05D004449 8.0e-13 77.0 89 84.3
Lj5g0023739 Lotus japonicus HOM05D003821 ORTHO05D004449 1.4e-12 76.3 89 83.1
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 1.4e-12 76.3 88 84.1
TWI14G0562 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 3.0e-12 75.1 90 84.4
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 4.0e-12 74.7 87 51.7
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 5.2e-12 74.3 90 52.2
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 5.2e-12 74.3 89 73.0
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 6.8e-12 73.9 75 77.3
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 2.0e-11 72.4 88 47.7
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 2.6e-11 72.0 88 64.8
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 2.6e-11 72.0 75 94.7
THA.LOC104817510 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 2.6e-11 72.0 90 80.0
Manes.03G194900 Manihot esculenta HOM05D003821 ORTHO05D004449 3.4e-11 71.6 73 91.8
Prupe.8G258100 Prunus persica HOM05D003821 ORTHO05D004449 3.4e-11 71.6 90 80.0
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 4.4e-11 71.2 78 51.3
Duzib138G0767 Durio zibethinus HOM05D003821 ORTHO05D004449 4.4e-11 71.2 87 78.2
Gohir.A11G115200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.4e-11 71.2 90 83.3
Gohir.D11G120200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.4e-11 71.2 90 83.3
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 4.4e-11 71.2 81 61.7
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 4.4e-11 71.2 87 78.2
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 5.7e-11 70.9 82 50.0
Atru.chr5.1182 Acer truncatum HOM05D003821 ORTHO05D004449 7.5e-11 70.5 90 83.3
Gorai.007G128900 Gossypium raimondii HOM05D003821 ORTHO05D004449 7.5e-11 70.5 90 83.3
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 1.3e-10 69.7 91 64.8
Gohir.D12G011000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.3e-10 69.7 90 81.1
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.8e-10 68.6 90 62.2
Phvul.007G106500 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 2.8e-10 68.6 89 76.4
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 2.8e-10 68.6 89 76.4
PGR004G1635 Punica granatum HOM05D003821 ORTHO05D004449 2.8e-10 68.6 82 81.7
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 2.8e-10 68.6 89 74.2
THA.LOC104821775 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 2.8e-10 68.6 74 94.6
Gohir.A12G010600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.7e-10 68.2 90 80.0
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 3.7e-10 68.2 79 51.9
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 3.7e-10 68.2 80 48.8
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 4.9e-10 67.8 75 54.7
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 4.9e-10 67.8 75 54.7
Glyma.10G019600 Glycine max HOM05D003821 ORTHO05D004449 4.9e-10 67.8 89 79.8
Gorai.008G011000 Gossypium raimondii HOM05D003821 ORTHO05D004449 6.3e-10 67.4 89 80.9
Glyma.02G154700 Glycine max HOM05D003821 ORTHO05D004449 8.3e-10 67.0 89 79.8
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 8.3e-10 67.0 103 46.6
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.4e-09 66.2 90 64.4
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 1.8e-09 65.9 91 67.0
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 1.8e-09 65.9 100 55.0
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 1.8e-09 65.9 71 52.1
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 1.8e-09 65.9 87 75.9
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 1.8e-09 65.9 81 50.6
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 2.4e-09 65.5 108 43.5
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 2.4e-09 65.5 71 52.1
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.1e-09 64.7 88 45.5
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 5.4e-09 64.3 89 75.3
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 9.2e-09 63.5 75 54.7
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 9.2e-09 63.5 77 50.6
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 1.2e-08 63.2 79 53.2
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 1.2e-08 63.2 71 50.7
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 1.2e-08 63.2 87 43.7
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 1.6e-08 62.8 89 47.2
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 2.7e-08 62.0 79 51.9
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 2.7e-08 62.0 78 52.6
CsaV3_7G029090 Cucumis sativus L. HOM05D003821 ORTHO05D004449 2.7e-08 62.0 89 49.4
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 3.5e-08 61.6 87 44.8
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 3.5e-08 61.6 106 46.2
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 4.5e-08 61.2 30 96.7
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 4.5e-08 61.2 30 96.7
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 4.5e-08 61.2 83 50.6
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 5.9e-08 60.8 91 46.2
Psat6g166600 Pisum sativum HOM05D003821 ORTHO05D004449 5.9e-08 60.8 90 71.1
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 7.8e-08 60.5 90 45.6
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 1.0e-07 60.1 86 44.2
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 1.0e-07 60.1 86 47.7
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.0e-07 60.1 91 46.2
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 1.0e-07 60.1 30 96.7
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 1.0e-07 60.1 30 93.3
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 1.3e-07 59.7 30 96.7
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 1.3e-07 59.7 106 40.6
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 1.3e-07 59.7 106 40.6
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 1.3e-07 59.7 103 39.8
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 1.3e-07 59.7 30 96.7
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 1.7e-07 59.3 30 93.3
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 2.9e-07 58.5 89 49.4
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 2.9e-07 58.5 112 41.1
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 2.9e-07 58.5 30 93.3
BcaC06g33446 Brassica carinata HOM05D003821 ORTHO05D004449 3.9e-07 58.2 75 52.0
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 3.9e-07 58.2 30 90.0
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 5.0e-07 57.8 30 93.3
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 5.0e-07 57.8 30 90.0
Sc24g0003850 Simmondsia chinensis HOM05D000714 ORTHO05D000544 5.0e-07 57.8 90 46.7
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 5.0e-07 57.8 71 46.5
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 8.6e-07 57.0 30 90.0
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 1.1e-06 56.6 90 44.4
MD03G1285000 Malus domestica HOM05D003821 ORTHO05D004449 1.1e-06 56.6 29 93.1
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 1.1e-06 56.6 116 38.8
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 1.1e-06 56.6 87 42.5
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 1.5e-06 56.2 30 86.7
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 1.9e-06 55.8 79 49.4
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 2.5e-06 55.5 30 86.7
arahy.Tifrunner.gnm1.ann1.LH51N9 Arachis hypogaea HOM05D003821 ORTHO05D004449 3.3e-06 55.1 100 44.0
C07p47410 Brassica napus HOM05D003821 ORTHO05D004449 5.6e-06 54.3 27 96.3
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 5.6e-06 54.3 89 42.7
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 5.6e-06 54.3 89 42.7
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 7.3e-06 53.9 30 86.7
Lj4g0002252 Lotus japonicus HOM05D003821 ORTHO05D004449 7.3e-06 53.9 29 89.7
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 9.5e-06 53.5 30 93.3
BcaC07g37933 Brassica carinata HOM05D003821 ORTHO05D004449 9.5e-06 53.5 72 50.0
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 9.5e-06 53.5 88 38.6
Peaxi162Scf00048g00209 Petunia axillaris HOM05D003821 ORTHO05D004449 9.5e-06 53.5 76 43.4
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 9.5e-06 53.5 30 83.3


User provided reference genes

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