Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G213600 Manihot esculenta HOM05D007479 ORTHO05D009416 3.9e-108 394.8 200 100.0
QL12p023941 Quercus lobata HOM05D007479 ORTHO05D009416 3.7e-50 202.2 168 63.1
Duzib133G1271 Durio zibethinus HOM05D007479 ORTHO05D009416 1.4e-49 200.3 136 72.8
Thecc.01G290200 Theobroma cacao HOM05D007479 ORTHO05D009416 1.6e-48 196.8 138 71.7
Ciclev10022531m.g Citrus clementina HOM05D007479 ORTHO05D009416 3.5e-48 195.7 163 66.9
Cfa006037 Carpinus fangiana HOM05D007479 ORTHO05D009416 1.0e-47 194.1 148 69.6
CiPaw.07G099900 Carya illinoinensis HOM05D007479 ORTHO05D009416 6.5e-47 191.4 112 83.9
FvH4_2g24710 Fragaria vesca HOM05D007479 ORTHO05D009416 6.5e-47 191.4 122 78.7
FAN20G0962 Fragaria x ananassa HOM05D007479 ORTHO05D009416 6.5e-47 191.4 122 78.7
FAN24G3263 Fragaria x ananassa HOM05D000112 ORTHO05D000564 6.5e-47 191.4 122 78.7
FAN27G0664 Fragaria x ananassa HOM05D007479 ORTHO05D009416 6.5e-47 191.4 122 78.7
COL.COLO4_08032 Corchorus olitorius HOM05D007479 ORTHO05D009416 1.5e-46 190.3 138 71.0
Sabra14G0101000 Salix brachista HOM05D007479 ORTHO05D009416 1.9e-46 189.9 172 61.0
GSVIVG01011009001 Vitis vinifera HOM05D007479 ORTHO05D009416 1.9e-46 189.9 159 66.0
Cpa.g.sc9.160 Carica papaya HOM05D007479 ORTHO05D009416 5.5e-46 188.3 181 58.6
Gohir.D08G080200 Gossypium hirsutum HOM05D007479 ORTHO05D009416 5.5e-46 188.3 136 69.9
Gorai.004G085300 Gossypium raimondii HOM05D007479 ORTHO05D009416 9.5e-46 187.6 136 69.9
ClCG09G006510 Citrullus lanatus HOM05D007479 ORTHO05D009416 3.6e-45 185.7 120 76.7
RcHm_v2.0_Chr6g0292541 Rosa chinensis HOM05D007479 ORTHO05D009416 3.6e-45 185.7 124 75.0
Potri.014G135400 Populus trichocarpa HOM05D007479 ORTHO05D009416 4.7e-45 185.3 156 66.0
TWI59G0977 Tripterygium wilfordii HOM05D007479 ORTHO05D009416 4.7e-45 185.3 147 68.0
TWI59G1446 Tripterygium wilfordii HOM05D007479 ORTHO05D009416 4.7e-45 185.3 147 68.0
MD00G1056400 Malus domestica HOM05D007479 ORTHO05D009416 6.1e-45 184.9 122 76.2
CANSAT25G0138 Cannabis sativa HOM05D007479 ORTHO05D009416 8.0e-45 184.5 165 59.4
Sed0025615 Sechium edule HOM05D007479 ORTHO05D009416 8.0e-45 184.5 112 79.5
Prupe.8G252200 Prunus persica HOM05D007479 ORTHO05D009416 1.0e-44 184.1 106 84.9
Haze_04810 Corylus avellana HOM05D007479 ORTHO05D009416 1.4e-44 183.7 184 58.2
PGR044G0517 Punica granatum HOM05D007479 ORTHO05D009416 1.4e-44 183.7 120 75.0
CSS0010600 Camellia sinensis var. sinensis HOM05D007479 ORTHO05D009416 1.8e-44 183.3 175 61.1
CSS0014944 Camellia sinensis var. sinensis HOM05D007479 ORTHO05D009416 1.8e-44 183.3 175 61.1
MELO3C015894.2 Cucumis melo HOM05D007479 ORTHO05D009416 2.3e-44 183.0 120 75.8
Gohir.A08G072000 Gossypium hirsutum HOM05D007479 ORTHO05D009416 6.8e-44 181.4 136 68.4
MSTRG.12593 Avicennia marina HOM05D007479 ORTHO05D009416 1.2e-43 180.6 164 59.8
CsaV3_7G028280 Cucumis sativus L. HOM05D007479 ORTHO05D009416 1.2e-43 180.6 120 74.2
Atru.chr5.1282 Acer truncatum HOM05D007479 ORTHO05D009416 1.5e-43 180.3 172 59.3
Nn3g21272 Nelumbo nucifera HOM05D007479 ORTHO05D009416 2.0e-43 179.9 136 67.6
TAR362G0341 Trochodendron aralioides HOM05D007479 ORTHO05D009416 2.6e-43 179.5 157 59.2
MBI19_g32765_MAGBIO Magnolia biondii HOM05D007479 ORTHO05D009416 9.8e-43 177.6 122 71.3
arahy.Tifrunner.gnm1.ann1.5G1G6M Arachis hypogaea HOM05D007479 ORTHO05D009416 2.2e-42 176.4 157 61.8
Hma1.2p1_0209F.1_g089100 Hydrangea macrophylla HOM05D007479 ORTHO05D009416 2.8e-42 176.0 122 74.6
Lj1g0024237 Lotus japonicus HOM05D007479 ORTHO05D009416 2.8e-42 176.0 164 56.7
Actinidia00698 Actinidia chinensis HOM05D007479 ORTHO05D009416 3.7e-42 175.6 132 69.7
Aqoxy2G03133 Aquilegia oxysepala HOM05D007479 ORTHO05D009416 3.7e-42 175.6 118 72.9
Ca_09112_v3 Cicer arietinum L. HOM05D000335 ORTHO05D001251 3.7e-42 175.6 105 80.0
Eucgr.K03432 Eucalyptus grandis HOM05D007479 ORTHO05D009416 4.9e-42 175.3 127 66.9
Oeu047908.1 Olea europaea HOM05D007479 ORTHO05D009416 6.3e-42 174.9 127 69.3
CARHR251580 Cardamine hirsuta HOM05D007479 ORTHO05D009416 8.3e-42 174.5 165 58.2
CSS0048836 Camellia sinensis var. sinensis HOM05D007479 ORTHO05D009416 1.4e-41 173.7 138 69.6
VMungo1383G0484 Vigna mungo HOM05D007479 ORTHO05D009416 1.4e-41 173.7 167 58.7
Glyma.19G206000 Glycine max HOM05D007479 ORTHO05D009416 2.4e-41 172.9 165 56.4
Sp6g03190 Schrenkiella parvula HOM05D007479 ORTHO05D009416 4.1e-41 172.2 115 70.4
AL6G49780 Arabidopsis lyrata HOM05D007479 ORTHO05D009416 5.4e-41 171.8 118 70.3
EL10Ac7g17366 Beta vulgaris HOM05D007479 ORTHO05D009416 1.2e-40 170.6 173 57.2
AUR62036657 Chenopodium quinoa HOM05D007479 ORTHO05D009416 1.2e-40 170.6 112 74.1
Phvul.001G201900 Phaseolus vulgaris HOM05D007479 ORTHO05D009416 1.2e-40 170.6 167 58.1
AT4G03150 Arabidopsis thaliana HOM05D007479 ORTHO05D009416 1.6e-40 170.2 115 71.3
Rhsim13G0017200 Rhododendron simsii HOM05D007479 ORTHO05D009416 1.6e-40 170.2 137 65.0
Medtr7g107680 Medicago truncatula HOM05D007479 ORTHO05D009416 3.5e-40 169.1 125 67.2
A09p02470 Brassica napus HOM05D007479 ORTHO05D009416 4.5e-40 168.7 144 59.0
BraA09t35894Z Brassica rapa HOM05D007479 ORTHO05D009416 4.5e-40 168.7 144 59.0
Thhalv10029006m.g Eutrema salsugineum HOM05D007479 ORTHO05D009416 4.5e-40 168.7 134 62.7
Peaxi162Scf01039g00126 Petunia axillaris HOM05D007479 ORTHO05D009416 5.9e-40 168.3 158 57.0
Lalb_Chr18g0047491 Lupinus albus HOM05D007479 ORTHO05D009416 7.8e-40 167.9 160 55.6
TPR.G32316 Trifolium pratense HOM05D007479 ORTHO05D009416 1.0e-39 167.5 182 51.6
Psat3g024840 Pisum sativum HOM05D007479 ORTHO05D009416 1.3e-39 167.2 103 75.7
BcaB01g01976 Brassica carinata HOM05D007479 ORTHO05D009416 1.7e-39 166.8 123 66.7
Migut.N01396 Erythranthe guttata HOM05D007479 ORTHO05D009416 2.3e-39 166.4 107 74.8
C09p02570 Brassica napus HOM05D007479 ORTHO05D009416 2.9e-39 166.0 144 56.9
BolC9t53187H Brassica oleracea HOM05D007479 ORTHO05D009416 3.8e-39 165.6 144 58.3
Cc01_g20220 Coffea canephora HOM05D007479 ORTHO05D009416 3.8e-39 165.6 135 63.7
Carub.0006s3390 Capsella rubella HOM05D007479 ORTHO05D009416 5.0e-39 165.2 172 53.5
PSO210G3923 Papaver somniferum HOM05D007479 ORTHO05D009416 5.0e-39 165.2 127 67.7
THA.LOC104826012 Tarenaya hassleriana HOM05D007479 ORTHO05D009416 5.0e-39 165.2 150 58.0
DCAR_002787 Daucus carota HOM05D007479 ORTHO05D009416 6.6e-39 164.9 113 71.7
Nitab4.5_0002093g0220 Nicotiana tabacum HOM05D007479 ORTHO05D009416 1.9e-38 163.3 149 57.7
CDE09G0484 Ceratophyllum demersum HOM05D007479 ORTHO05D009416 3.3e-38 162.5 111 71.2
PSO572G0003 Papaver somniferum HOM05D007479 ORTHO05D009416 3.3e-38 162.5 127 67.7
PSO832G0938 Papaver somniferum HOM05D007479 ORTHO05D009416 3.3e-38 162.5 127 67.7
PSO832G2794 Papaver somniferum HOM05D007479 ORTHO05D009416 3.3e-38 162.5 127 67.7
Sc17g0003550 Simmondsia chinensis HOM05D007479 ORTHO05D009416 3.3e-38 162.5 123 66.7
Nitab4.5_0004150g0020 Nicotiana tabacum HOM05D007479 ORTHO05D009416 4.3e-38 162.2 116 69.0
Lsat_1_v5_gn_8_55221 Lactuca sativa HOM05D007479 ORTHO05D009416 9.5e-38 161.0 119 65.5
HPP92_010636 Vanilla planifolia HOM05D007479 ORTHO05D009416 9.5e-38 161.0 159 53.5
HanXRQChr11g0350171 Helianthus annuus HOM05D007479 ORTHO05D009416 2.1e-37 159.8 123 64.2
ECA236G2582 Erigeron canadensis HOM05D007479 ORTHO05D009416 2.8e-37 159.5 178 50.0
Hund18029 Selenicereus undatus HOM05D007479 ORTHO05D009416 2.8e-37 159.5 136 61.0
Sopen06g035860 Solanum pennellii HOM05D007479 ORTHO05D009416 2.8e-37 159.5 115 66.1
PGSC0003DMG400024042 Solanum tuberosum HOM05D007479 ORTHO05D009416 3.6e-37 159.1 105 69.5
Solyc06g084470.4 Solanum lycopersicum HOM05D007479 ORTHO05D009416 6.1e-37 158.3 115 65.2
SGA_v2.0_scaffold172G39060 Striga asiatica HOM05D007479 ORTHO05D009416 8.0e-37 157.9 134 61.9
SalBow6G0786 Salvia bowleyana HOM05D007479 ORTHO05D009416 4.0e-36 155.6 115 68.7
ATR0706G261 Amborella trichopoda HOM05D001702 ORTHO05D001791 5.2e-36 155.2 104 68.3
unitig_21.g20281 Utricularia gibba HOM05D007479 ORTHO05D009416 1.5e-35 153.7 113 67.3
Hma1.2p1_0209F.1_g089110 Hydrangea macrophylla HOM05D007479 ORTHO05D009416 4.4e-35 152.1 85 88.2
AUR62034613 Chenopodium quinoa HOM05D007479 ORTHO05D009416 5.8e-35 151.8 89 80.9
Os12g0534100 Oryza sativa ssp. japonica HOM05D007479 ORTHO05D009416 9.8e-35 151.0 146 54.8
Lj2P1185T15 Lonicera japonica HOM05D007479 ORTHO05D009416 6.4e-34 148.3 85 83.5
vmacro02508 Vaccinium macrocarpon HOM05D007479 ORTHO05D009416 3.5e-32 142.5 238 42.0
SalBow8G4180 Salvia bowleyana HOM05D007479 ORTHO05D009416 8.6e-31 137.9 84 81.0
Pp3c5_13320 Physcomitrium patens HOM05D007479 ORTHO05D009416 5.2e-28 128.6 100 60.0
AagrBONN_evm.TU.Sc2ySwM_368.764 Anthoceros agrestis HOM05D007479 ORTHO05D009416 8.9e-28 127.9 114 51.8
Mapoly0029s0155 Marchantia polymorpha HOM05D007479 ORTHO05D009416 1.5e-27 127.1 115 53.0
Mapoly0275s0001 Marchantia polymorpha HOM05D007479 ORTHO05D009416 1.5e-27 127.1 115 53.0
CBR_g22325 Chara braunii HOM05D007479 ORTHO05D009416 2.7e-24 116.3 112 51.8
Dinv32992 Davidia involucrata HOM05D007479 ORTHO05D009416 7.6e-11 71.6 56 62.5


User provided reference genes

Program Settings