Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 2101.6 1117 100.0
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1651.0 1124 79.7
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1633.6 1142 76.2
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1611.3 1137 76.2
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1604.0 1147 75.9
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1601.6 1133 76.4
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1601.6 1132 77.7
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1600.1 1075 78.9
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1596.6 1138 75.6
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1594.3 1134 74.3
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1579.3 1126 73.2
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1574.7 1136 73.0
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1567.0 1097 75.2
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1565.1 1126 72.6
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1557.3 1097 74.7
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1552.3 1087 75.4
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1551.6 1100 75.1
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1546.9 1106 74.4
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1543.9 1011 79.0
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1534.2 1100 74.5
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1525.4 1114 72.3
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1523.1 1077 74.5
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1521.5 1112 72.5
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1504.2 1145 72.3
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1500.0 1147 70.4
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1488.4 1127 70.5
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1486.9 1003 77.2
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1484.2 1117 70.3
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1479.5 1121 71.3
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1471.4 1136 68.7
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1468.8 1260 65.6
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1463.4 1078 72.2
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1462.2 1136 69.1
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1459.1 1136 68.2
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1452.6 1142 68.0
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1451.0 1171 68.1
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1447.6 1107 71.0
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1442.9 1138 67.8
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1442.2 1116 69.8
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1441.4 1052 70.8
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1433.7 1113 69.8
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1433.7 1113 69.5
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1430.2 1031 70.2
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1429.5 1053 70.7
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1423.7 1164 65.9
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1419.1 1138 69.5
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1418.7 1133 69.4
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1415.2 1102 67.7
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1414.8 1142 66.5
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1409.8 1133 69.5
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1402.5 1047 70.4
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1401.0 1052 69.7
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1400.2 1133 66.3
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1396.3 1090 68.8
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1394.0 1133 67.3
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1387.5 1111 64.1
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1385.9 1139 68.2
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1385.2 1144 66.3
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1384.4 990 69.2
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1384.4 997 69.0
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1384.4 1109 65.6
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1384.4 1029 68.0
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1384.4 1059 66.9
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1383.2 1137 64.8
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1379.8 1069 66.8
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1376.3 1030 68.1
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1375.9 1148 65.9
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1375.5 1110 64.1
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1374.4 1130 65.6
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1374.0 1137 64.1
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1372.1 1127 63.1
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1368.2 1130 66.8
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1367.4 1067 66.4
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1364.0 1129 65.0
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1362.1 1006 67.6
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1360.5 1039 66.4
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1360.1 1021 67.0
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1357.4 1052 66.9
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1355.9 1133 65.4
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1354.7 1023 66.9
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1350.9 1016 66.8
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1350.5 1016 66.7
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1349.3 1113 66.5
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1346.6 1033 66.2
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1341.3 1138 63.4
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1334.3 1020 67.6
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1333.5 1140 63.2
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1322.0 1129 63.2
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1303.5 1131 63.0
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1293.1 882 80.2
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1282.3 873 75.7
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1275.4 1380 52.3
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1274.6 1074 62.8
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1260.7 1064 63.0
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1254.2 1002 63.7
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1234.6 1085 60.1
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1233.0 1033 62.5
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1230.7 1118 58.5
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1200.7 901 67.4
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1193.3 1115 57.1
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1191.8 1056 61.6
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1178.3 1035 58.5
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 0.0e+00 1140.2 1080 58.8
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1130.5 1066 58.3
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1110.9 956 61.3
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1110.5 816 71.7
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1079.3 679 79.8
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 2.1e-307 1059.3 1125 54.0
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 5.1e-306 1054.7 783 69.2
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 5.4e-292 1008.1 1059 51.4
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 7.9e-275 951.0 1038 48.7
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 1.1e-265 920.6 662 75.4
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 1.1e-263 914.1 964 48.9
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 2.2e-248 863.2 1008 46.6
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.2e-232 810.1 546 76.6
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.2e-232 810.1 546 76.6
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 4.8e-224 782.3 587 69.7
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 7.5e-209 731.9 1036 41.6
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 6.9e-154 549.3 378 75.9
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 1.0e-93 349.4 400 51.5
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 1.4e-61 242.7 201 59.7
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 7.9e-57 226.9 584 28.6
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 4.0e-53 214.5 143 71.3
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 8.4e-51 206.8 165 65.5
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 1.0e-48 199.9 170 63.5
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.8e-48 199.1 222 51.4
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.8e-46 191.8 211 50.7
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.4e-42 179.5 176 55.7
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 1.6e-41 176.0 188 55.9
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 6.9e-37 160.6 388 30.7
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 3.0e-32 145.2 634 23.8
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 7.4e-31 140.6 167 50.3
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.7e-27 129.4 106 62.3
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 4.8e-22 111.3 97 58.8
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 3.2e-18 98.6 244 29.5
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 3.6e-17 95.1 107 49.5
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 3.0e-16 92.0 74 64.9
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 1.6e-12 79.7 68 60.3
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 5.9e-12 77.8 272 29.4
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 1.3e-11 76.6 117 41.0
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 3.0e-08 65.5 80 50.0
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 2.6e-07 62.4 82 46.3
PGSC0003DMG400017058 Solanum tuberosum HOM05D004682 ORTHO05D026186 7.5e-07 60.8 76 48.7
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 1.7e-06 59.7 47 46.8
Solyc09g037050.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 2.2e-06 59.3 55 54.5
Solyc03g051710.1 Solanum lycopersicum HOM05D004682 ORTHO05D006197 6.3e-06 57.8 50 50.0
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 6.3e-06 57.8 48 58.3


User provided reference genes

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