Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G211300 Manihot esculenta HOM05D005701 ORTHO05D007058 2.3e-116 422.2 206 100.0
Manes.05G072000 Manihot esculenta HOM05D005701 ORTHO05D007058 2.3e-71 272.7 159 82.4
TWI59G0853 Tripterygium wilfordii HOM05D005701 ORTHO05D007058 1.1e-70 270.4 159 81.8
Gorai.008G006100 Gossypium raimondii HOM05D005701 ORTHO05D007058 3.3e-70 268.9 158 81.6
QL02p002445 Quercus lobata HOM05D005701 ORTHO05D007058 1.3e-69 266.9 149 83.2
Ciclev10022400m.g Citrus clementina HOM05D005701 ORTHO05D007058 1.6e-69 266.5 159 78.6
Potri.002G212400 Populus trichocarpa HOM05D005701 ORTHO05D007058 1.6e-69 266.5 153 83.0
Cfa006081 Carpinus fangiana HOM05D005701 ORTHO05D007058 6.3e-69 264.6 148 80.4
Atru.chr5.1332 Acer truncatum HOM05D005701 ORTHO05D007058 1.8e-68 263.1 153 81.0
CiPaw.08G102100 Carya illinoinensis HOM05D005701 ORTHO05D007058 1.8e-68 263.1 154 79.9
Thecc.01G285600 Theobroma cacao HOM05D005701 ORTHO05D007058 4.1e-68 261.9 150 82.0
Duzib138G1703 Durio zibethinus HOM05D005701 ORTHO05D007058 1.5e-67 260.0 154 81.2
Gohir.A12G006700 Gossypium hirsutum HOM05D005701 ORTHO05D007058 1.5e-67 260.0 150 82.0
Actinidia24310 Actinidia chinensis HOM05D005701 ORTHO05D007058 7.7e-67 257.7 144 81.2
Haze_04768 Corylus avellana HOM05D005701 ORTHO05D007058 1.7e-66 256.5 170 72.4
MD03G1271500 Malus domestica HOM05D005701 ORTHO05D007058 3.8e-66 255.4 150 78.7
Nn1g02106 Nelumbo nucifera HOM05D005701 ORTHO05D007058 5.0e-66 255.0 144 81.9
GSVIVG01011062001 Vitis vinifera HOM05D005701 ORTHO05D007058 8.5e-66 254.2 149 79.9
Dinv11265 Davidia involucrata HOM05D005701 ORTHO05D007058 2.5e-65 252.7 150 78.0
PGR119G1915 Punica granatum HOM05D005701 ORTHO05D007058 2.5e-65 252.7 145 81.4
MD11G1292100 Malus domestica HOM05D005701 ORTHO05D007058 3.2e-65 252.3 152 78.9
Sed0003723 Sechium edule HOM05D005701 ORTHO05D007058 7.2e-65 251.1 147 80.3
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 9.4e-65 250.8 162 73.5
Glyma.02G150100 Glycine max HOM05D005701 ORTHO05D007058 1.2e-64 250.4 146 80.8
PGSC0003DMG401020044 Solanum tuberosum HOM05D005701 ORTHO05D007058 1.2e-64 250.4 144 78.5
Prupe.8G247700 Prunus persica HOM05D005701 ORTHO05D007058 2.1e-64 249.6 151 78.1
Lj5g0014836 Lotus japonicus HOM05D005701 ORTHO05D007058 2.7e-64 249.2 140 83.6
RcHm_v2.0_Chr6g0291961 Rosa chinensis HOM05D005701 ORTHO05D007058 2.7e-64 249.2 150 77.3
Medtr1g089810 Medicago truncatula HOM05D005701 ORTHO05D007058 3.6e-64 248.8 152 76.3
PSO170G3928 Papaver somniferum HOM05D005701 ORTHO05D007058 3.6e-64 248.8 147 78.9
Psat6g169920 Pisum sativum HOM05D005701 ORTHO05D007058 7.9e-64 247.7 151 75.5
PSO302G0130 Papaver somniferum HOM05D005701 ORTHO05D007058 1.0e-63 247.3 154 77.3
vmacro02538 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 1.0e-63 247.3 144 77.8
Lalb_Chr06g0163181 Lupinus albus HOM05D005701 ORTHO05D007058 1.4e-63 246.9 145 80.0
ClCG09G006770 Citrullus lanatus HOM05D005701 ORTHO05D007058 3.0e-63 245.7 147 79.6
CSS0017429 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 3.9e-63 245.4 144 75.7
Lsat_1_v5_gn_5_187740 Lactuca sativa HOM05D005701 ORTHO05D007058 3.9e-63 245.4 149 73.8
MELO3C015871.2 Cucumis melo HOM05D005701 ORTHO05D007058 1.1e-62 243.8 153 78.4
FAN20G1753 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.1e-62 243.8 150 76.0
FAN27G2557 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.1e-62 243.8 150 76.0
Oeu006228.1 Olea europaea HOM05D005701 ORTHO05D007058 1.1e-62 243.8 152 75.7
VMungo0720G2830 Vigna mungo HOM05D005701 ORTHO05D007058 1.1e-62 243.8 150 76.7
Solyc06g084390.3 Solanum lycopersicum HOM05D005701 ORTHO05D007058 2.0e-62 243.0 144 75.7
Sopen06g035780 Solanum pennellii HOM05D005701 ORTHO05D007058 2.0e-62 243.0 144 75.7
Eucgr.H01544 Eucalyptus grandis HOM05D005701 ORTHO05D007058 2.6e-62 242.7 143 79.0
SalBow6G2366 Salvia bowleyana HOM05D005701 ORTHO05D007058 2.6e-62 242.7 153 70.6
HanXRQChr14g0430981 Helianthus annuus HOM05D005701 ORTHO05D007058 4.4e-62 241.9 143 76.2
FAN15G1986 Fragaria x ananassa HOM05D005701 ORTHO05D007058 5.7e-62 241.5 150 75.3
Nitab4.5_0002093g0100 Nicotiana tabacum HOM05D005701 ORTHO05D007058 1.7e-61 240.0 150 74.0
CANSAT25G0672 Cannabis sativa HOM05D005701 ORTHO05D007058 2.2e-61 239.6 151 74.2
FAN24G1361 Fragaria x ananassa HOM05D005701 ORTHO05D007058 4.8e-61 238.4 150 74.0
Migut.N02175 Erythranthe guttata HOM05D005701 ORTHO05D007058 6.3e-61 238.0 149 71.1
TAR365G0921 Trochodendron aralioides HOM05D005701 ORTHO05D007058 6.3e-61 238.0 128 85.9
TPR.G26671 Trifolium pratense HOM05D005701 ORTHO05D007058 8.2e-61 237.7 157 72.6
Aqoxy2G03192 Aquilegia oxysepala HOM05D005701 ORTHO05D007058 1.1e-60 237.3 152 73.0
Ca_10397_v3 Cicer arietinum L. HOM05D005701 ORTHO05D007058 1.1e-60 237.3 149 73.8
CsaV3_7G028500 Cucumis sativus L. HOM05D005701 ORTHO05D007058 1.1e-60 237.3 153 76.5
Migut.N02139 Erythranthe guttata HOM05D005701 ORTHO05D007058 1.1e-60 237.3 149 71.1
MSTRG.17433 Avicennia marina HOM05D005701 ORTHO05D007058 1.4e-60 236.9 159 69.8
Sc24g0004070 Simmondsia chinensis HOM05D005701 ORTHO05D007058 1.4e-60 236.9 145 73.8
CAN.G1682.11 Capsicum annuum HOM05D005701 ORTHO05D007058 2.4e-60 236.1 148 75.0
Phvul.007G168600 Phaseolus vulgaris HOM05D005701 ORTHO05D007058 3.1e-60 235.7 151 74.2
THA.LOC104801212 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 1.5e-59 233.4 139 75.5
ECA248G0764 Erigeron canadensis HOM05D005701 ORTHO05D007058 4.5e-59 231.9 144 71.5
THA.LOC104826003 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 7.7e-59 231.1 146 73.3
Aa31LG5G2530 Aethionema arabicum HOM05D005701 ORTHO05D007058 1.3e-58 230.3 172 63.4
SGA_v2.0_scaffold172G39038 Striga asiatica HOM05D005701 ORTHO05D007058 2.2e-58 229.6 157 70.1
Peaxi162Scf00783g00418 Petunia axillaris HOM05D005701 ORTHO05D007058 2.9e-58 229.2 128 78.9
Cc01_g05150 Coffea canephora HOM05D005701 ORTHO05D007058 3.8e-58 228.8 128 81.2
Nitab4.5_0010603g0020 Nicotiana tabacum HOM05D005701 ORTHO05D007058 5.0e-58 228.4 129 79.8
Lj2A1180T63 Lonicera japonica HOM05D005701 ORTHO05D007058 6.5e-58 228.0 145 73.1
Thecc.01G285700 Theobroma cacao HOM05D005701 ORTHO05D007058 1.1e-57 227.3 157 67.5
unitig_8.g3319 Utricularia gibba HOM05D005701 ORTHO05D007058 1.9e-57 226.5 143 72.0
EL10Ac7g17192 Beta vulgaris HOM05D005701 ORTHO05D007058 5.5e-57 224.9 144 71.5
ECA248G1579 Erigeron canadensis HOM05D005701 ORTHO05D007058 7.2e-57 224.6 160 66.9
Carub.0006s3407 Capsella rubella HOM05D005701 ORTHO05D007058 1.2e-56 223.8 172 64.0
AT4G02980 Arabidopsis thaliana HOM05D005701 ORTHO05D007058 1.6e-56 223.4 172 63.4
AL6G49950 Arabidopsis lyrata HOM05D005701 ORTHO05D007058 1.4e-55 220.3 172 63.4
A09p02300 Brassica napus HOM05D005701 ORTHO05D007058 2.3e-55 219.5 171 63.7
BraA09t35879Z Brassica rapa HOM05D005701 ORTHO05D007058 2.3e-55 219.5 171 63.7
BcaB01g02494 Brassica carinata HOM05D005701 ORTHO05D007058 3.9e-55 218.8 171 62.6
Migut.D00251 Erythranthe guttata HOM05D005701 ORTHO05D007058 5.2e-55 218.4 150 67.3
Ah.08g212880 Amaranthus hybridus HOM05D005701 ORTHO05D007058 6.7e-55 218.0 150 70.0
Thhalv10028980m.g Eutrema salsugineum HOM05D005701 ORTHO05D007058 8.8e-55 217.6 173 61.8
Hund06566 Selenicereus undatus HOM05D005701 ORTHO05D007058 8.8e-55 217.6 145 70.3
BolC9t53172H Brassica oleracea HOM05D005701 ORTHO05D007058 3.3e-54 215.7 147 71.4
C09p02410 Brassica napus HOM05D005701 ORTHO05D007058 5.7e-54 214.9 147 71.4
A03p30690 Brassica napus HOM05D005701 ORTHO05D007058 7.4e-54 214.5 171 61.4
BolC3t16031H Brassica oleracea HOM05D005701 ORTHO05D007058 7.4e-54 214.5 171 61.4
C03p37390 Brassica napus HOM05D005701 ORTHO05D007058 9.7e-54 214.2 171 61.4
BraA03t12248Z Brassica rapa HOM05D005701 ORTHO05D007058 9.7e-54 214.2 173 61.8
Cpa.g.sc9.126 Carica papaya HOM05D005701 ORTHO05D007058 1.3e-53 213.8 126 77.8
CARHR251350 Cardamine hirsuta HOM05D005701 ORTHO05D007058 1.7e-53 213.4 128 78.1
Sp6g03020 Schrenkiella parvula HOM05D005701 ORTHO05D007058 1.7e-53 213.4 171 62.0
BcaC01g06714 Brassica carinata HOM05D005701 ORTHO05D007058 3.7e-53 212.2 171 60.8
SGA_v2.0_scaffold1G00437 Striga asiatica HOM05D005701 ORTHO05D007058 4.8e-53 211.8 153 62.7
HPP92_010620 Vanilla planifolia HOM05D005701 ORTHO05D007058 4.8e-53 211.8 143 69.2
Hma1.2p1_0628F.1_g191820 Hydrangea macrophylla HOM05D005701 ORTHO05D007058 2.4e-52 209.5 131 75.6
FvH4_2g24150 Fragaria vesca HOM05D005701 ORTHO05D007058 1.0e-50 204.1 126 74.6
SalBow3G3506 Salvia bowleyana HOM05D005701 ORTHO05D007058 3.8e-50 202.2 129 69.8
CDE08G1024 Ceratophyllum demersum HOM05D005701 ORTHO05D007058 6.5e-50 201.4 126 71.4
AUR62036778 Chenopodium quinoa HOM05D005701 ORTHO05D007058 6.5e-50 201.4 200 53.0
TPR.G13316 Trifolium pratense HOM05D005701 ORTHO05D007058 1.1e-49 200.7 147 65.3
MSTRG.12575 Avicennia marina HOM05D005701 ORTHO05D007058 1.5e-49 200.3 161 59.0
Zm00001eb137840 Zea mays HOM05D005701 ORTHO05D007058 3.2e-49 199.1 145 66.2
Zm00001eb410800 Zea mays HOM05D005701 ORTHO05D007058 9.4e-49 197.6 126 74.6
Os12g0529400 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 2.7e-48 196.1 125 71.2
Cc01_g03720 Coffea canephora HOM05D005701 ORTHO05D007058 6.1e-48 194.9 106 82.1
Zm00001eb410760 Zea mays HOM05D005701 ORTHO05D007058 8.0e-48 194.5 126 74.6
vmacro02539 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 4.4e-46 188.7 122 71.3
Gohir.D12G006100 Gossypium hirsutum HOM05D005701 ORTHO05D007058 2.8e-45 186.0 113 79.6
Oeu047892.2 Olea europaea HOM05D005701 ORTHO05D007058 2.8e-45 186.0 237 45.6
CAN.G996.16 Capsicum annuum HOM05D005701 ORTHO05D007058 3.7e-45 185.7 123 67.5
MBI19_g33449_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 3.7e-45 185.7 107 78.5
MBI19_g39288_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 2.4e-44 183.0 104 79.8
QL02p081958 Quercus lobata HOM05D005701 ORTHO05D007058 1.2e-43 180.6 114 74.6
BcaB01g01993 Brassica carinata HOM05D005701 ORTHO05D007058 1.6e-43 180.3 109 78.9
ATR0626G241 Amborella trichopoda HOM05D005701 ORTHO05D007058 7.7e-43 177.9 111 72.1
Zm00001eb440220 Zea mays HOM05D005701 ORTHO05D007058 2.9e-42 176.0 113 73.5
Pp3c4_12750 Physcomitrium patens HOM05D005701 ORTHO05D007058 3.8e-42 175.6 158 52.5
SMO164G0245 Selaginella moellendorffii HOM05D005701 ORTHO05D007058 5.0e-42 175.3 133 60.9
Pp3c4_12660 Physcomitrium patens HOM05D005701 ORTHO05D007058 2.5e-41 172.9 128 61.7
Cc00_g05320 Coffea canephora HOM05D005701 ORTHO05D007058 1.3e-37 160.6 111 65.8
Rhsim13G0021400 Rhododendron simsii HOM05D005701 ORTHO05D007058 3.7e-37 159.1 117 65.8
AUR62033690 Chenopodium quinoa HOM05D005701 ORTHO05D007058 1.6e-35 153.7 91 76.9
Zm00001eb410780 Zea mays HOM05D005701 ORTHO05D007058 7.7e-35 151.4 117 65.0
AagrBONN_evm.TU.Sc2ySwM_117.1970 Anthoceros agrestis HOM05D005701 ORTHO05D007058 6.8e-31 138.3 133 49.6
CBR_g38020 Chara braunii HOM05D005701 ORTHO05D007058 5.9e-27 125.2 95 61.1
Lsat_1_v5_gn_4_17561 Lactuca sativa HOM05D005701 ORTHO05D007058 1.0e-23 114.4 123 56.1
Rhsim13G0021300 Rhododendron simsii HOM05D005701 ORTHO05D007058 4.4e-22 109.0 191 36.6
Os12g0529300 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 4.0e-15 85.9 50 74.0
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 9.8e-14 81.3 45 80.0
Ah.04g164000 Amaranthus hybridus HOM05D005701 ORTHO05D007058 2.9e-13 79.7 57 61.4
CSS0004068 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 2.9e-13 79.7 51 66.7
C09p02610 Brassica napus HOM05D005701 ORTHO05D007058 2.6e-06 56.6 47 59.6
HPP92_017198 Vanilla planifolia HOM05D005701 ORTHO05D051565 7.5e-06 55.1 56 48.2


User provided reference genes

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