Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 1.5e-239 832.4 419 100.0
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 9.8e-154 547.4 423 66.9
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.7e-153 546.6 420 65.5
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 2.7e-151 539.3 423 66.0
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 1.0e-150 537.3 424 66.3
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 1.7e-150 536.6 419 66.6
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 5.8e-146 521.5 423 64.8
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 9.2e-144 514.2 420 63.1
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 1.7e-142 510.0 425 62.4
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 2.3e-142 509.6 428 61.9
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 1.1e-141 507.3 438 63.0
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 9.0e-139 497.7 425 60.7
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 6.4e-137 491.5 442 60.9
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 3.5e-135 485.7 429 58.7
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 6.6e-134 481.5 437 58.8
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.3e-132 477.2 422 59.5
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 1.6e-132 476.9 449 56.6
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.2e-130 470.7 421 57.7
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 2.6e-130 469.5 422 58.3
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 6.4e-129 464.9 428 59.8
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 6.0e-127 458.4 445 57.8
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 3.0e-126 456.1 431 56.4
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 9.6e-125 451.1 422 58.8
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.1e-124 449.9 427 57.1
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 6.2e-124 448.4 432 55.8
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 1.8e-123 446.8 421 58.2
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.1e-123 446.0 427 56.4
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 4.0e-123 445.7 427 56.7
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 7.6e-122 441.4 424 55.7
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 2.9e-121 439.5 437 54.9
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.8e-121 439.1 424 55.4
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 4.2e-120 435.6 387 62.0
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 1.5e-117 427.2 421 57.7
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 6.2e-116 421.8 421 57.2
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 8.2e-116 421.4 427 55.3
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 1.1e-115 421.0 421 55.3
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 1.4e-115 420.6 421 57.2
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.1e-115 419.5 421 57.2
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 9.0e-115 417.9 347 63.4
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 9.0e-115 417.9 423 55.3
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 9.0e-115 417.9 424 53.8
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 3.4e-114 416.0 398 57.3
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 7.6e-114 414.8 421 56.5
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 6.5e-113 411.8 392 56.1
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 1.9e-112 410.2 421 54.6
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 4.2e-112 409.1 425 53.9
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 4.2e-112 409.1 419 53.2
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 9.3e-112 407.9 421 56.1
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 1.6e-111 407.1 422 55.0
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 4.6e-111 405.6 420 54.0
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.8e-110 403.7 421 53.4
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 3.9e-110 402.5 418 51.9
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 1.5e-109 400.6 443 51.5
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 7.4e-109 398.3 423 52.5
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 1.3e-108 397.5 396 54.3
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 2.6e-106 389.8 432 50.7
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 4.5e-106 389.0 329 62.0
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 7.6e-106 388.3 432 51.9
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 5.0e-105 385.6 422 49.3
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 5.0e-105 385.6 440 48.4
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 2.1e-103 380.2 419 50.4
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 2.7e-103 379.8 422 49.5
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 3.6e-103 379.4 422 50.2
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 4.6e-103 379.0 423 49.9
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 4.6e-103 379.0 423 49.9
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 6.1e-103 378.6 438 49.5
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 1.3e-102 377.5 420 50.7
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 2.3e-102 376.7 421 50.6
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 2.3e-102 376.7 422 49.1
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 3.0e-102 376.3 424 50.9
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 1.5e-101 374.0 424 49.3
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 7.4e-101 371.7 425 50.1
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 7.4e-101 371.7 437 48.3
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 4.8e-100 369.0 441 49.0
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 6.3e-100 368.6 452 46.7
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 8.2e-100 368.2 428 49.8
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 2.4e-99 366.7 405 52.3
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 6.9e-99 365.2 437 47.1
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 6.9e-99 365.2 436 46.1
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 9.1e-99 364.8 446 50.2
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 1.3e-97 360.9 442 48.2
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 1.3e-97 360.9 438 45.7
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 1.3e-97 360.9 438 45.4
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 2.5e-96 356.7 428 49.8
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.6e-95 354.0 321 58.6
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 4.7e-95 352.4 432 47.2
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 1.0e-94 351.3 429 48.5
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 3.9e-94 349.4 425 48.7
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 5.1e-94 349.0 417 48.0
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.7e-92 344.0 427 46.4
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 2.4e-91 340.1 444 47.5
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 1.3e-89 334.3 440 47.0
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 6.5e-89 332.0 426 46.9
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 4.2e-88 329.3 426 43.2
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 4.7e-87 325.9 351 50.1
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.4e-86 324.3 428 43.7
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 1.4e-86 324.3 410 45.1
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 3.9e-86 322.8 449 45.2
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 6.7e-86 322.0 426 43.9
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 8.8e-86 321.6 425 41.9
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 8.8e-86 321.6 425 41.9
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 1.1e-85 321.2 426 42.3
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 9.7e-85 318.2 427 43.1
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 1.3e-84 317.8 424 42.0
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 2.8e-84 316.6 450 45.1
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 1.8e-83 313.9 481 40.7
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 1.2e-82 311.2 430 44.4
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 4.2e-80 302.8 419 44.9
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 1.0e-78 298.1 426 41.3
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 1.8e-78 297.4 423 38.3
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 2.0e-77 293.9 432 42.4
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 1.7e-76 290.8 424 43.2
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 2.4e-75 287.0 425 40.0
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 6.5e-73 278.9 427 39.3
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 1.6e-71 274.2 334 48.2
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.2e-69 268.1 414 40.6
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.3e-68 264.6 410 40.7
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 5.4e-67 259.2 409 40.8
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 1.0e-65 255.0 419 40.1
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 2.3e-65 253.8 295 50.8
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 6.5e-65 252.3 415 40.2
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 8.6e-65 251.9 274 50.7
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 3.3e-64 250.0 416 38.5
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 4.2e-64 249.6 382 39.5
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 3.6e-63 246.5 354 43.2
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 4.4e-61 239.6 274 48.2
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 9.2e-59 231.9 215 58.1
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 2.0e-58 230.7 370 41.1
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 7.0e-51 205.7 419 35.1
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 8.0e-47 192.2 393 34.6
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 1.2e-42 178.3 428 31.8
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 4.6e-42 176.4 246 45.5
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 4.0e-38 163.3 168 51.8
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 1.7e-33 147.9 194 43.8
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 1.5e-32 144.8 211 41.2
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 1.3e-28 131.7 149 47.7
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 1.3e-28 131.7 149 47.7
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 1.3e-28 131.7 160 43.8
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 2.2e-28 131.0 142 50.0
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 2.9e-28 130.6 145 48.3
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 2.9e-28 130.6 145 48.3
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 2.3e-25 120.9 397 26.4
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 2.4e-22 110.9 118 50.8
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 2.0e-21 107.8 128 49.2
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 1.3e-20 105.1 86 65.1
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 8.7e-17 92.4 270 28.9
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 2.4e-14 84.3 61 72.1
Hma1.2p1_0377F.1_g139390 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 2.9e-12 77.4 54 66.7
arahy.Tifrunner.gnm1.ann1.59R5K9 Arachis hypogaea HOM05D004053 ORTHO05D005065 4.9e-12 76.6 90 50.0
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 4.2e-11 73.6 71 46.5
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 3.5e-10 70.5 70 48.6
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 3.5e-10 70.5 70 48.6
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 6.0e-10 69.7 58 53.4
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 7.9e-10 69.3 83 44.6
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.3e-09 68.6 80 42.5
arahy.Tifrunner.gnm1.ann1.HAWP0L Arachis hypogaea HOM05D019977 ORTHO05D005065 3.9e-09 67.0 177 32.2
BolC5t28964H Brassica oleracea HOM05D004053 ORTHO05D005065 3.9e-09 67.0 109 39.4
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 1.9e-08 64.7 67 49.3
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 1.9e-08 64.7 67 49.3
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 1.9e-08 64.7 67 49.3
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 5.6e-08 63.2 55 52.7
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 5.6e-08 63.2 55 52.7
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 2.4e-06 57.8 60 43.3
Psat4g131480 Pisum sativum HOM05D004053 ORTHO05D005065 4.0e-06 57.0 82 35.4
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 5.3e-06 56.6 108 37.0


User provided reference genes

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