Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 2.2e-243 845.5 515 100.0
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 6.1e-113 412.1 530 61.3
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 3.8e-91 339.7 523 57.6
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 6.3e-86 322.4 523 54.1
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 4.0e-80 303.1 531 53.9
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 8.9e-80 302.0 546 52.6
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 2.0e-79 300.8 521 52.4
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 4.4e-79 299.7 521 52.2
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 1.8e-77 294.3 514 56.0
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 3.5e-76 290.0 516 53.9
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 7.8e-76 288.9 551 43.6
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.7e-75 287.7 527 54.5
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 1.7e-75 287.7 539 54.2
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.5e-74 284.6 520 48.3
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 1.9e-74 284.3 522 52.1
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 2.8e-73 280.4 536 53.9
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 6.1e-73 279.3 555 48.6
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.0e-72 278.5 526 53.2
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 1.0e-72 278.5 534 46.1
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 1.8e-72 277.7 558 51.3
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 4.0e-72 276.6 519 55.3
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 5.2e-72 276.2 552 50.0
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 6.8e-72 275.8 519 51.6
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 8.9e-72 275.4 517 54.4
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.4e-71 273.5 543 52.3
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 9.8e-71 271.9 514 54.1
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 8.3e-70 268.9 525 51.6
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 1.9e-69 267.7 545 50.5
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 2.4e-69 267.3 556 49.6
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 3.2e-69 266.9 543 51.6
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 3.2e-69 266.9 525 52.6
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 5.4e-69 266.2 511 53.2
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 5.4e-69 266.2 523 51.2
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 1.0e-67 261.9 422 56.2
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 1.0e-67 261.9 516 46.3
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 1.3e-67 261.5 554 47.7
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.7e-67 261.2 534 51.1
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 1.7e-67 261.2 167 82.0
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 4.3e-66 256.5 158 82.9
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 4.3e-66 256.5 526 43.0
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 1.2e-65 255.0 509 54.0
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 2.1e-65 254.2 542 50.4
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 1.8e-64 251.1 547 49.7
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 4.0e-64 250.0 524 49.0
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 5.2e-64 249.6 483 44.5
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 8.9e-64 248.8 518 52.1
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.2e-63 248.4 551 48.8
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 4.4e-63 246.5 214 63.6
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 5.8e-63 246.1 543 44.0
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 7.5e-63 245.7 465 50.1
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 1.3e-62 245.0 519 50.1
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 1.7e-62 244.6 537 48.8
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 2.9e-62 243.8 164 77.4
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 1.1e-61 241.9 532 48.5
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 1.4e-61 241.5 507 46.2
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 1.4e-61 241.5 513 48.9
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 2.4e-61 240.7 218 62.4
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.4e-61 240.7 530 51.1
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 3.2e-61 240.4 542 49.6
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 4.1e-61 240.0 519 45.1
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 9.2e-61 238.8 537 50.1
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 1.2e-60 238.4 439 52.4
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 1.6e-60 238.0 439 51.7
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 1.6e-60 238.0 153 79.7
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 2.1e-60 237.7 542 48.9
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 4.6e-60 236.5 163 76.7
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 4.6e-60 236.5 555 45.0
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 4.6e-60 236.5 521 49.5
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 6.0e-60 236.1 457 54.0
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 1.3e-59 235.0 436 53.4
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 3.0e-59 233.8 468 43.6
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 3.9e-59 233.4 144 81.2
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 3.9e-59 233.4 162 75.9
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 5.1e-59 233.0 507 44.8
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 5.1e-59 233.0 155 76.8
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 6.6e-59 232.6 163 76.1
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 6.6e-59 232.6 161 75.2
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 1.9e-58 231.1 536 44.8
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 3.3e-58 230.3 527 49.1
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 4.3e-58 229.9 533 47.7
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 4.3e-58 229.9 465 48.6
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 4.3e-58 229.9 552 45.3
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 9.5e-58 228.8 431 52.7
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 1.2e-57 228.4 555 46.7
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 2.1e-57 227.6 498 41.0
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 2.1e-57 227.6 156 76.3
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 2.1e-57 227.6 201 64.7
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 3.6e-57 226.9 156 74.4
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 6.2e-57 226.1 520 45.6
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 8.1e-57 225.7 447 43.4
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 1.1e-56 225.3 477 47.6
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 1.8e-56 224.6 153 75.8
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 1.8e-56 224.6 166 74.1
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 2.3e-56 224.2 430 52.6
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 2.3e-56 224.2 155 75.5
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 2.3e-56 224.2 155 75.5
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 5.2e-56 223.0 169 70.4
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 6.8e-56 222.6 221 59.3
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 6.8e-56 222.6 430 50.2
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 6.8e-56 222.6 505 50.1
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.5e-55 221.5 530 46.6
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-55 221.5 170 70.0
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 5.8e-55 219.5 428 52.6
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 5.8e-55 219.5 435 49.2
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 7.6e-55 219.2 128 82.8
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 9.9e-55 218.8 142 77.5
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 1.7e-54 218.0 429 47.6
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 2.9e-54 217.2 590 45.3
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 3.7e-54 216.9 473 51.4
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 3.7e-54 216.9 464 49.6
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 3.7e-54 216.9 607 41.5
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 4.9e-54 216.5 130 82.3
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 4.9e-54 216.5 430 51.9
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 6.4e-54 216.1 126 82.5
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 6.4e-54 216.1 427 52.0
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 8.3e-54 215.7 433 52.7
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 8.3e-54 215.7 126 82.5
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 8.3e-54 215.7 560 45.5
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 2.4e-53 214.2 431 52.4
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 4.1e-53 213.4 125 82.4
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 4.1e-53 213.4 503 45.9
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 7.1e-53 212.6 125 82.4
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 4.6e-52 209.9 123 82.9
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 6.0e-52 209.5 176 65.3
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.3e-51 208.4 131 80.9
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 2.3e-51 207.6 447 41.4
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 3.0e-51 207.2 466 46.6
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 5.1e-51 206.5 174 64.9
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 8.6e-51 205.7 129 79.1
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 8.6e-51 205.7 130 80.0
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-50 205.3 122 82.0
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 1.1e-50 205.3 553 44.8
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 2.5e-50 204.1 448 41.7
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 3.3e-50 203.8 152 72.4
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 3.3e-50 203.8 152 72.4
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 4.7e-49 199.9 447 41.4
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 5.2e-48 196.4 449 41.0
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 8.9e-48 195.7 174 63.2
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 6.4e-46 189.5 427 37.9
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 2.4e-45 187.6 427 34.9
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 3.0e-43 180.6 500 36.2
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 5.6e-42 176.4 156 62.2
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 1.3e-41 175.3 163 60.7
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 5.3e-40 169.9 99 84.8
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 3.4e-39 167.2 152 61.2
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 3.8e-38 163.7 164 57.9
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 8.4e-38 162.5 124 71.0
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 3.2e-37 160.6 129 68.2
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 7.1e-37 159.5 419 49.6
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 1.6e-36 158.3 104 76.0
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 2.3e-35 154.5 109 75.2
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 2.1e-33 147.9 96 75.0
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 1.1e-32 145.6 105 66.7
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 2.2e-30 137.9 151 51.7
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 3.8e-30 137.1 85 78.8
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 5.1e-27 126.7 100 57.0
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 2.5e-26 124.4 76 80.3
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 3.3e-26 124.0 80 78.8
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 2.8e-25 120.9 71 84.5
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.8e-22 110.5 454 44.9
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 6.5e-22 109.8 78 69.2
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 1.9e-21 108.2 78 67.9
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.2e-20 105.5 166 42.8
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-18 99.0 65 78.5
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-18 99.0 65 78.5
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 5.7e-18 96.7 63 76.2
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 2.8e-17 94.4 56 83.9
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 6.9e-16 89.7 65 75.4
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 3.8e-14 84.0 152 38.2
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 5.0e-14 83.6 51 80.4
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 5.0e-14 83.6 54 77.8
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 9.3e-13 79.3 204 38.2
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 3.9e-11 73.9 86 53.5
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 9.7e-10 69.3 91 46.2
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 4.8e-09 67.0 484 37.8
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 1.3e-06 58.9 60 53.3


User provided reference genes

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