Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G202000 Manihot esculenta HOM05D005370 ORTHO05D006659 1.2e-124 449.9 241 100.0
Sabra02G0036500 Salix brachista HOM05D005370 ORTHO05D006659 8.9e-91 337.4 246 75.2
Potri.002G045500 Populus trichocarpa HOM05D005370 ORTHO05D006659 1.3e-89 333.6 246 74.8
TWI18G0973 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 4.4e-74 282.0 241 66.4
GSVIVG01018102001 Vitis vinifera HOM05D005370 ORTHO05D006659 7.6e-74 281.2 241 66.4
TWI12G0023 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 1.7e-73 280.0 241 66.0
CSS0021022 Camellia sinensis var. sinensis HOM05D005370 ORTHO05D006659 1.4e-72 276.9 240 64.2
Nn3g19501 Nelumbo nucifera HOM05D005370 ORTHO05D006659 2.4e-72 276.2 245 65.3
Prupe.1G175900 Prunus persica HOM05D005370 ORTHO05D006659 4.2e-72 275.4 242 63.2
Ciclev10006717m.g Citrus clementina HOM05D005370 ORTHO05D006659 6.0e-71 271.6 240 62.9
CiPaw.02G117200 Carya illinoinensis HOM05D005370 ORTHO05D006659 1.3e-70 270.4 240 62.9
QL06p015215 Quercus lobata HOM05D005370 ORTHO05D006659 1.3e-70 270.4 241 62.7
MBI15_g19756_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 2.3e-70 269.6 241 63.9
AUR62032263 Chenopodium quinoa HOM05D005370 ORTHO05D006659 6.6e-70 268.1 250 62.0
Lalb_Chr02g0142451 Lupinus albus HOM05D005370 ORTHO05D006659 9.6e-69 264.2 240 65.0
Cfa018256 Carpinus fangiana HOM05D005370 ORTHO05D006659 2.8e-68 262.7 260 59.2
Ca_24537_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 3.6e-68 262.3 241 63.5
AUR62011949 Chenopodium quinoa HOM05D005370 ORTHO05D006659 4.8e-68 261.9 250 61.2
Ca_14753_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 4.8e-68 261.9 241 63.5
EL10Ac5g10469 Beta vulgaris HOM05D005370 ORTHO05D006659 6.2e-68 261.5 256 59.0
Sed0023556 Sechium edule HOM05D005370 ORTHO05D006659 1.1e-67 260.8 243 62.1
Phvul.007G177000 Phaseolus vulgaris HOM05D005370 ORTHO05D006659 1.4e-67 260.4 242 63.2
COL.COLO4_15774 Corchorus olitorius HOM05D005370 ORTHO05D006659 2.4e-67 259.6 243 60.9
CANSAT11G0223 Cannabis sativa HOM05D005370 ORTHO05D006659 6.9e-67 258.1 245 62.4
ECA236G0510 Erigeron canadensis HOM05D005370 ORTHO05D006659 1.2e-66 257.3 239 60.7
Lj5g0014373 Lotus japonicus HOM05D005370 ORTHO05D006659 2.0e-66 256.5 239 63.6
VMungo0720G0865 Vigna mungo HOM05D005370 ORTHO05D006659 2.0e-66 256.5 241 63.1
Lsat_1_v5_gn_8_94841 Lactuca sativa HOM05D005370 ORTHO05D006659 5.8e-66 255.0 240 60.8
Peaxi162Scf00434g00622 Petunia axillaris HOM05D005370 ORTHO05D006659 5.8e-66 255.0 240 59.6
Cc01_g08030 Coffea canephora HOM05D005370 ORTHO05D006659 9.9e-66 254.2 237 61.6
RcHm_v2.0_Chr4g0389631 Rosa chinensis HOM05D005370 ORTHO05D006659 9.9e-66 254.2 243 57.2
HanXRQChr02g0032381 Helianthus annuus HOM05D005370 ORTHO05D006659 2.2e-65 253.1 240 60.8
FAN22G1699 Fragaria x ananassa HOM05D005370 ORTHO05D006659 2.9e-65 252.7 243 56.0
Sopen04g034560 Solanum pennellii HOM05D005370 ORTHO05D006659 4.9e-65 251.9 254 58.7
CANSAT11G2293 Cannabis sativa HOM05D005370 ORTHO05D006659 6.4e-65 251.5 242 61.2
FAN17G2982 Fragaria x ananassa HOM05D005370 ORTHO05D006659 2.4e-64 249.6 244 55.7
Migut.D00369 Erythranthe guttata HOM05D005370 ORTHO05D006659 4.2e-64 248.8 240 60.0
Solyc04g080950.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 4.2e-64 248.8 254 57.5
MELO3C005475.2 Cucumis melo HOM05D005370 ORTHO05D006659 7.1e-64 248.1 244 59.8
Gorai.005G046600 Gossypium raimondii HOM05D005370 ORTHO05D006659 7.1e-64 248.1 242 58.3
Gohir.D02G042266 Gossypium hirsutum HOM05D005370 ORTHO05D006659 1.2e-63 247.3 242 59.1
Gohir.A02G035301 Gossypium hirsutum HOM05D005370 ORTHO05D006659 1.6e-63 246.9 242 57.9
Thecc.04G244800 Theobroma cacao HOM05D005370 ORTHO05D006659 4.6e-63 245.4 242 57.9
Ah.11g050020 Amaranthus hybridus HOM05D005370 ORTHO05D006659 1.0e-62 244.2 251 56.6
CsaV3_5G004690 Cucumis sativus L. HOM05D005370 ORTHO05D006659 1.0e-62 244.2 244 58.6
Aqoxy3G04193 Aquilegia oxysepala HOM05D005370 ORTHO05D006659 1.3e-62 243.8 242 58.3
TAR362G0430 Trochodendron aralioides HOM05D005370 ORTHO05D006659 1.7e-62 243.4 235 63.0
FvH4_4g02310 Fragaria vesca HOM05D005370 ORTHO05D006659 3.9e-62 242.3 243 55.1
PSO210G0029 Papaver somniferum HOM05D005370 ORTHO05D006659 7.4e-61 238.0 242 57.4
DCAR_023471 Daucus carota HOM05D005370 ORTHO05D006659 9.6e-61 237.7 244 57.0
CAN.G851.23 Capsicum annuum HOM05D005370 ORTHO05D006659 1.3e-60 237.3 261 53.3
SalBow4G0733 Salvia bowleyana HOM05D005370 ORTHO05D006659 2.1e-60 236.5 242 57.4
Duzib052G0322 Durio zibethinus HOM05D005370 ORTHO05D006659 2.8e-60 236.1 296 50.7
SGA_v2.0_scaffold3169G54286 Striga asiatica HOM05D005370 ORTHO05D006659 1.8e-59 233.4 261 54.8
Medtr1g070900 Medicago truncatula HOM05D005370 ORTHO05D006659 2.4e-59 233.0 244 60.7
PSO238G0055 Papaver somniferum HOM05D005370 ORTHO05D006659 4.0e-59 232.3 242 56.6
SGA_v2.0_scaffold580G53040 Striga asiatica HOM05D005370 ORTHO05D006659 5.3e-59 231.9 251 55.4
Prupe.2G050700 Prunus persica HOM05D005370 ORTHO05D006659 6.9e-59 231.5 243 57.2
HPP92_015262 Vanilla planifolia HOM05D005370 ORTHO05D006659 1.2e-58 230.7 241 57.7
arahy.Tifrunner.gnm1.ann1.XNPI4G Arachis hypogaea HOM05D005370 ORTHO05D006659 2.0e-58 229.9 240 55.0
DCAR_028371 Daucus carota HOM05D005370 ORTHO05D006659 2.0e-58 229.9 256 54.3
Glyma.10G031500 Glycine max HOM05D005370 ORTHO05D006659 2.6e-58 229.6 239 56.9
PGSC0003DMG400003760 Solanum tuberosum HOM05D005370 ORTHO05D006659 9.9e-58 227.6 246 56.1
arahy.Tifrunner.gnm1.ann1.T9F7M4 Arachis hypogaea HOM05D005370 ORTHO05D006659 2.9e-57 226.1 224 58.0
Dinv22486 Davidia involucrata HOM05D005370 ORTHO05D006659 2.9e-57 226.1 205 62.4
Actinidia27521 Actinidia chinensis HOM05D005370 ORTHO05D006659 4.2e-56 222.2 247 54.7
Nn1g02548 Nelumbo nucifera HOM05D005370 ORTHO05D000069 7.1e-56 221.5 206 63.6
Haze_11274 Corylus avellana HOM05D005370 ORTHO05D006659 2.7e-55 219.5 216 61.1
ATR0665G285 Amborella trichopoda HOM05D005370 ORTHO05D006659 4.6e-55 218.8 244 54.9
arahy.Tifrunner.gnm1.ann1.7J2YFM Arachis hypogaea HOM05D005370 ORTHO05D006659 4.6e-55 218.8 238 53.4
FAN12G2588 Fragaria x ananassa HOM05D005370 ORTHO05D006659 4.6e-55 218.8 230 53.5
MD04G1026200 Malus domestica HOM05D005370 ORTHO05D006659 7.9e-55 218.0 209 59.3
Oeu025788.2 Olea europaea HOM05D005370 ORTHO05D006659 7.4e-53 211.5 211 60.7
CDE07G1268 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 5.3e-51 205.3 243 51.4
Sc24g0004270 Simmondsia chinensis HOM05D005370 ORTHO05D006659 1.5e-50 203.8 221 57.9
Cpa.g.sc58.39 Carica papaya HOM05D005370 ORTHO05D006659 6.5e-49 198.4 206 59.7
ClCG01G004480 Citrullus lanatus HOM05D005370 ORTHO05D006659 7.1e-48 194.9 210 58.1
Hund02875 Selenicereus undatus HOM05D005370 ORTHO05D006659 1.5e-45 187.2 238 47.5
Thhalv10017901m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 7.4e-45 184.9 242 47.1
Haze_21184 Corylus avellana HOM05D005370 ORTHO05D006659 3.7e-44 182.6 297 44.4
BcaC06g34636 Brassica carinata HOM05D005370 ORTHO05D006659 1.1e-43 181.0 238 47.1
C07p26250 Brassica napus HOM05D005370 ORTHO05D006659 1.1e-43 181.0 238 47.1
BolC7t43153H Brassica oleracea HOM05D005370 ORTHO05D006659 1.1e-43 181.0 238 47.1
Nitab4.5_0001840g0120 Nicotiana tabacum HOM05D005370 ORTHO05D006659 4.1e-43 179.1 121 76.9
SGA_v2.0_scaffold138G35287 Striga asiatica HOM05D005370 ORTHO05D006659 4.1e-43 179.1 99 92.9
Nitab4.5_0002156g0030 Nicotiana tabacum HOM05D005370 ORTHO05D006659 6.9e-43 178.3 121 76.9
BcaC06g31683 Brassica carinata HOM05D005370 ORTHO05D006659 9.0e-43 177.9 238 45.8
BraA06t27643Z Brassica rapa HOM05D005370 ORTHO05D006659 9.0e-43 177.9 238 45.8
Psat3g119240 Pisum sativum HOM05D005370 ORTHO05D006659 9.0e-43 177.9 228 50.9
AT5G43680 Arabidopsis thaliana HOM05D005370 ORTHO05D006659 1.2e-42 177.6 238 45.8
AL8G16570 Arabidopsis lyrata HOM05D005370 ORTHO05D006659 2.0e-42 176.8 238 46.2
Sp2g08480 Schrenkiella parvula HOM05D005370 ORTHO05D006659 3.4e-42 176.0 242 45.5
Nitab4.5_0001423g0070 Nicotiana tabacum HOM05D005370 ORTHO05D006659 5.9e-42 175.3 268 43.3
MSTRG.18281 Avicennia marina HOM05D005370 ORTHO05D006659 7.6e-42 174.9 119 79.0
A06p47750 Brassica napus HOM05D005370 ORTHO05D006659 7.6e-42 174.9 238 45.4
TPR.G39035 Trifolium pratense HOM05D005370 ORTHO05D000069 1.0e-41 174.5 215 52.6
CARHR179930 Cardamine hirsuta HOM05D005370 ORTHO05D006659 1.7e-41 173.7 240 45.0
Carub.0008s0497 Capsella rubella HOM05D005370 ORTHO05D006659 1.4e-40 170.6 239 43.9
Prupe.1G027700 Prunus persica HOM05D005370 ORTHO05D006659 1.4e-40 170.6 189 55.6
PGSC0003DMG400017885 Solanum tuberosum HOM05D005370 ORTHO05D006659 1.2e-39 167.5 121 72.7
Glyma.02G142900 Glycine max HOM05D005370 ORTHO05D006659 2.7e-39 166.4 106 83.0
Nitab4.5_0001903g0040 Nicotiana tabacum HOM05D005370 ORTHO05D006659 4.6e-39 165.6 95 89.5
Eucgr.G02606 Eucalyptus grandis HOM05D005370 ORTHO05D006659 3.0e-38 162.9 182 53.8
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 8.2e-36 154.8 207 47.8
Mapoly0029s0143 Marchantia polymorpha HOM05D005370 ORTHO05D006659 1.8e-35 153.7 265 41.1
Zm00001eb201750 Zea mays HOM05D005370 ORTHO05D006659 4.1e-35 152.5 265 37.7
Psat5g092160 Pisum sativum HOM05D009633 ORTHO05D011907 6.9e-35 151.8 103 75.7
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.1e-32 144.4 88 81.8
Pp3c17_23420 Physcomitrium patens HOM05D005370 ORTHO05D006659 9.4e-32 141.4 241 39.8
Aa31LG5G3560 Aethionema arabicum HOM05D005370 ORTHO05D006659 1.2e-31 141.0 238 39.9
Nn8g40523 Nelumbo nucifera HOM05D005370 ORTHO05D006659 1.4e-27 127.5 116 60.3
Sopen01g042090 Solanum pennellii HOM05D005370 ORTHO05D006659 4.5e-26 122.5 174 43.7
Psat1g083920 Pisum sativum HOM05D005370 ORTHO05D006659 7.7e-26 121.7 173 47.4
Psat0s8363g0040 Pisum sativum HOM05D005370 ORTHO05D006659 1.0e-25 121.3 173 47.4
CBR_g32014 Chara braunii HOM05D005370 ORTHO05D006659 1.4e-24 117.5 257 33.5
Os11g0550900 Oryza sativa ssp. japonica HOM05D005370 ORTHO05D006659 1.4e-24 117.5 258 34.9
Duzib212G0616 Durio zibethinus HOM05D005370 ORTHO05D006659 2.3e-22 110.2 181 42.0
MBI11_g15920_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 6.7e-22 108.6 145 49.0
Actinidia19979 Actinidia chinensis HOM05D005370 ORTHO05D006659 1.5e-21 107.5 135 46.7
Nitab4.5_0004235g0010 Nicotiana tabacum HOM05D005370 ORTHO05D006659 3.3e-21 106.3 62 88.7
AagrBONN_evm.TU.Sc2ySwM_228.5248 Anthoceros agrestis HOM05D005370 ORTHO05D006659 4.8e-20 102.4 229 34.9
MBI02_g40862_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 7.0e-19 98.6 155 44.5
Cc01_g05510 Coffea canephora HOM05D005370 ORTHO05D006659 9.1e-19 98.2 62 82.3
Cc01_g05520 Coffea canephora HOM05D005370 ORTHO05D006659 1.2e-18 97.8 152 43.4
MBI16_g44196_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 2.0e-18 97.1 155 46.5
MBI18_g19775_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 2.0e-18 97.1 170 41.8
SEGI_11901 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 5.0e-17 92.4 66 71.2
Psat3g119160 Pisum sativum HOM05D005370 ORTHO05D006659 1.1e-16 91.3 158 45.6
MBI16_g45671_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.5e-16 90.9 185 38.9
Psat3g119360 Pisum sativum HOM05D005370 ORTHO05D006659 8.0e-15 85.1 48 87.5
Solyc01g098540.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 4.0e-14 82.8 62 77.4
Thhalv10003352m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 8.8e-14 81.6 167 36.5
Psat1g084080 Pisum sativum HOM05D005370 ORTHO05D006659 9.7e-13 78.2 138 42.0
SMO116G0410 Selaginella moellendorffii HOM05D005370 ORTHO05D006659 2.2e-09 67.0 220 25.9
SEGI_37606 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 3.2e-08 63.2 46 58.7
SEGI_21191 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 7.2e-08 62.0 127 39.4
QL06p015203 Quercus lobata HOM05D005370 ORTHO05D006659 9.4e-08 61.6 34 79.4
MCO01G785 Micromonas commoda HOM05D005370 ORTHO05D006659 4.0e-06 56.2 80 35.0


User provided reference genes

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