Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 1.4e-96 356.3 180 100.0
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.7e-86 322.8 188 87.2
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.1e-85 320.1 183 88.5
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 8.7e-83 310.5 182 86.3
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 6.2e-81 304.3 180 82.8
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 1.1e-80 303.5 175 85.7
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 1.4e-80 303.1 180 83.9
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 9.0e-80 300.4 173 83.8
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 2.6e-79 298.9 180 82.8
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 2.6e-79 298.9 174 85.1
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 5.8e-79 297.7 180 82.8
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 1.0e-78 297.0 180 83.3
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 1.3e-78 296.6 174 84.5
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 2.2e-78 295.8 182 80.2
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 2.9e-78 295.4 181 82.3
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 8.4e-78 293.9 182 80.2
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 4.2e-77 291.6 178 82.0
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 9.3e-77 290.4 179 81.6
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 9.3e-77 290.4 174 82.8
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 1.2e-76 290.0 180 81.1
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 2.7e-76 288.9 174 81.6
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 2.7e-76 288.9 182 79.7
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 3.5e-76 288.5 178 82.0
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 4.6e-76 288.1 182 77.5
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 1.0e-75 287.0 160 88.8
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.0e-75 287.0 174 81.0
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 1.1e-74 283.5 174 78.7
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 1.1e-74 283.5 180 77.2
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 1.5e-74 283.1 177 78.0
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 3.3e-74 282.0 189 76.7
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 7.4e-74 280.8 183 76.5
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 1.6e-73 279.6 179 77.7
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 2.1e-73 279.3 180 76.7
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 6.3e-73 277.7 177 76.8
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 1.8e-72 276.2 183 75.4
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 1.8e-72 276.2 180 77.8
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 3.1e-72 275.4 182 76.4
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 3.1e-72 275.4 164 82.9
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 5.3e-72 274.6 190 73.2
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 6.9e-72 274.2 183 74.9
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 6.9e-72 274.2 176 75.6
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 2.0e-71 272.7 171 77.8
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 5.9e-71 271.2 209 67.9
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 1.3e-70 270.0 176 74.4
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 1.7e-70 269.6 170 77.6
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 2.9e-70 268.9 169 78.7
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 5.0e-70 268.1 191 73.3
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 1.4e-69 266.5 173 76.3
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 1.4e-69 266.5 176 74.4
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 5.5e-69 264.6 179 73.2
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 4.6e-68 261.5 180 74.4
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 1.0e-67 260.4 168 75.0
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.9e-67 258.5 178 73.6
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 5.1e-67 258.1 173 74.6
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 6.7e-67 257.7 175 74.3
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 3.3e-66 255.4 242 57.9
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 4.3e-66 255.0 178 68.0
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 4.8e-65 251.5 190 67.9
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 6.3e-65 251.1 164 74.4
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.4e-64 250.0 182 70.9
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.4e-64 250.0 182 70.9
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 1.4e-64 250.0 182 69.2
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.8e-64 249.6 182 69.8
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 5.3e-64 248.1 182 69.8
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.2e-63 246.9 176 69.3
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.5e-63 246.5 177 71.2
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 3.4e-63 245.4 176 68.8
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 9.4e-61 237.3 163 71.8
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.7e-60 235.7 176 68.8
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 1.4e-59 233.4 138 85.5
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.0e-59 232.3 173 69.4
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 3.9e-59 231.9 194 62.4
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.1e-58 230.3 162 72.2
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 1.7e-57 226.5 140 80.7
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 3.7e-57 225.3 171 67.8
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 6.3e-57 224.6 170 68.8
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 8.2e-57 224.2 181 67.4
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 6.9e-56 221.1 173 62.4
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 6.9e-56 221.1 149 73.2
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 1.2e-55 220.3 173 62.4
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 1.2e-55 220.3 170 66.5
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 1.7e-54 216.5 141 78.0
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 5.0e-54 214.9 177 61.0
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 1.1e-53 213.8 132 79.5
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 5.5e-53 211.5 171 60.8
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 2.7e-52 209.1 174 59.8
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.0e-51 207.2 172 59.9
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 6.7e-51 204.5 172 60.5
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 6.7e-51 204.5 135 76.3
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 1.5e-50 203.4 149 68.5
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 2.6e-50 202.6 172 59.9
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 2.6e-50 202.6 172 59.9
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 1.7e-49 199.9 157 59.9
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.2e-49 199.5 172 59.3
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 3.7e-49 198.7 175 59.4
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 3.7e-49 198.7 122 80.3
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 5.3e-48 194.9 124 77.4
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 7.0e-48 194.5 172 60.5
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 7.0e-48 194.5 173 58.4
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 9.1e-48 194.1 176 59.1
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 1.3e-46 190.3 176 58.5
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.3e-46 190.3 199 55.3
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 1.7e-46 189.9 126 73.8
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 2.2e-46 189.5 172 59.3
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 2.2e-46 189.5 127 74.8
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 8.5e-46 187.6 176 55.1
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 8.5e-46 187.6 176 55.1
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 8.5e-46 187.6 176 55.7
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 1.1e-45 187.2 113 80.5
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 1.0e-43 180.6 165 58.8
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 1.4e-43 180.3 165 58.2
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 5.7e-42 174.9 135 68.9
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 7.7e-39 164.5 138 62.3
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 2.9e-38 162.5 123 68.3
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 1.5e-37 160.2 166 56.0
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 7.2e-37 157.9 174 48.3
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 4.7e-36 155.2 178 45.5
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.0e-35 154.1 174 47.1
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 1.0e-35 154.1 120 63.3
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.4e-35 153.7 182 47.3
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.6e-34 149.4 137 56.9
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.8e-33 146.0 118 62.7
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 8.3e-33 144.4 191 41.9
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 8.3e-33 144.4 176 44.3
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 5.4e-32 141.7 118 62.7
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 2.0e-31 139.8 175 45.1
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 2.7e-31 139.4 176 46.0
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 7.7e-31 137.9 175 42.9
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 1.7e-30 136.7 174 43.1
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 2.9e-30 136.0 174 43.1
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 5.0e-30 135.2 174 43.1
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 8.8e-27 124.4 83 75.9
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 7.5e-26 121.3 169 38.5
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 9.8e-26 120.9 131 54.2
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 2.7e-23 112.8 165 39.4
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 1.9e-21 106.7 129 45.7
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 2.3e-19 99.8 63 77.8
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 2.3e-19 99.8 57 86.0
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 3.0e-19 99.4 57 86.0
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 4.0e-19 99.0 57 84.2
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 8.9e-19 97.8 152 38.2
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 2.6e-18 96.3 89 56.2
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 4.4e-18 95.5 57 82.5
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.4e-16 90.5 57 77.2
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 2.0e-15 86.7 90 53.3
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 5.0e-14 82.0 73 57.5
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 2.8e-12 76.3 41 87.8
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 6.2e-12 75.1 87 48.3
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 5.8e-10 68.6 44 72.7
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 2.0e-07 60.1 59 49.2
Cfa024934 Carpinus fangiana HOM05D006964 ORTHO05D008861 1.3e-06 57.4 148 28.4


User provided reference genes

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