Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 1.8e-231 805.4 373 100.0
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 1.4e-164 583.2 386 71.2
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 2.1e-163 579.3 378 69.8
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 2.1e-163 579.3 378 69.3
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.0e-162 577.0 378 69.8
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 1.9e-156 556.2 380 67.6
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 2.5e-156 555.8 378 68.0
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 1.8e-154 549.7 377 66.8
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 2.3e-154 549.3 378 66.9
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 3.9e-154 548.5 378 67.5
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 9.7e-153 543.9 378 66.7
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 1.1e-151 540.4 361 67.6
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 1.4e-151 540.0 377 66.8
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 3.1e-151 538.9 379 65.7
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 2.0e-150 536.2 379 65.7
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 7.7e-150 534.3 373 64.3
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 7.7e-150 534.3 407 63.9
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 6.5e-149 531.2 377 65.0
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 7.2e-148 527.7 377 65.0
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 3.0e-146 522.3 377 64.2
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 8.2e-144 514.2 377 62.6
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.1e-143 513.8 380 63.9
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 1.8e-143 513.1 378 64.0
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 3.5e-142 508.8 401 59.9
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 5.9e-142 508.1 379 62.0
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 1.7e-141 506.5 374 62.8
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 2.2e-141 506.1 378 64.0
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 2.2e-141 506.1 386 63.0
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 3.2e-140 502.3 381 61.4
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 5.5e-140 501.5 381 61.4
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 5.5e-140 501.5 383 62.4
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 9.4e-140 500.7 381 61.4
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 9.4e-140 500.7 378 61.1
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 1.6e-139 500.0 381 60.9
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.6e-139 500.0 385 61.6
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 2.1e-139 499.6 361 64.0
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 2.1e-139 499.6 374 63.1
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 2.7e-139 499.2 400 59.8
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 1.8e-138 496.5 378 61.6
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 8.8e-138 494.2 379 60.4
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 1.2e-137 493.8 378 61.1
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 1.5e-137 493.4 379 60.2
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 2.0e-137 493.0 381 61.7
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 2.0e-137 493.0 381 61.7
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 2.0e-137 493.0 378 60.3
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 4.4e-137 491.9 378 60.3
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 5.7e-137 491.5 378 60.8
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 7.5e-137 491.1 379 59.6
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 8.2e-136 487.6 405 55.3
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 1.1e-135 487.3 383 59.0
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 1.1e-135 487.3 378 60.1
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 1.4e-135 486.9 469 52.5
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 2.4e-135 486.1 385 61.0
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 4.1e-135 485.3 380 60.0
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 5.9e-134 481.5 379 59.4
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 5.9e-134 481.5 374 61.2
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 7.7e-134 481.1 394 58.4
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 7.7e-134 481.1 347 64.3
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 1.0e-133 480.7 375 60.8
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 1.3e-133 480.3 373 60.6
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 1.3e-133 480.3 378 61.4
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 2.9e-133 479.2 378 59.3
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 3.2e-132 475.7 377 60.5
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 9.4e-132 474.2 382 58.1
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 9.4e-132 474.2 374 61.2
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 2.1e-131 473.0 382 60.5
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 1.8e-130 469.9 381 59.3
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 2.3e-130 469.5 379 57.3
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 2.0e-129 466.5 378 58.7
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 6.3e-128 461.5 320 67.8
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 4.1e-127 458.8 349 63.3
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 5.4e-127 458.4 374 56.1
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 1.6e-126 456.8 373 58.4
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 4.5e-126 455.3 362 58.6
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 3.2e-124 449.1 345 58.8
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 6.1e-123 444.9 345 58.0
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 3.0e-122 442.6 301 67.1
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 8.9e-122 441.0 386 56.5
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.1e-119 434.1 421 51.8
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 7.8e-118 427.9 380 52.1
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 8.6e-109 397.9 379 52.2
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 8.0e-107 391.3 309 57.9
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 9.8e-105 384.4 275 65.1
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 4.9e-104 382.1 353 53.0
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 8.3e-104 381.3 335 55.5
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 3.9e-101 372.5 380 47.1
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 6.8e-98 361.7 392 46.4
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 1.3e-96 357.5 385 47.0
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 5.4e-95 352.1 378 45.8
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 4.3e-92 342.4 248 63.3
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 2.4e-90 336.7 297 54.2
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 5.2e-90 335.5 398 44.0
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 6.8e-90 335.1 380 44.7
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 2.9e-88 329.7 285 56.5
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 1.3e-85 320.9 261 57.9
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 2.5e-76 290.0 304 50.0
Lj4g0012021 Lotus japonicus HOM05D001404 ORTHO05D009009 7.3e-76 288.5 380 42.1
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.5e-73 280.8 374 39.3
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.1e-71 274.6 358 42.2
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 2.6e-65 253.4 216 53.7
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 1.9e-47 194.1 299 35.1
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 3.8e-40 169.9 365 31.2
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 1.1e-39 168.3 379 29.3
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 1.9e-39 167.5 365 29.9
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 1.9e-39 167.5 365 29.9
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 1.9e-39 167.5 371 31.3
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 2.5e-39 167.2 370 31.6
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 3.2e-39 166.8 372 29.3
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 3.2e-39 166.8 365 31.0
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 5.5e-39 166.0 140 58.6
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 1.6e-38 164.5 367 29.7
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 2.1e-38 164.1 367 30.2
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 2.1e-38 164.1 376 30.9
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 3.6e-38 163.3 368 29.6
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 6.1e-38 162.5 373 30.3
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 6.1e-38 162.5 369 32.0
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 1.0e-37 161.8 369 32.0
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.4e-37 161.4 368 29.9
AUR62026503 Chenopodium quinoa HOM05D001404 ORTHO05D009009 1.8e-37 161.0 173 51.4
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 2.3e-37 160.6 369 30.6
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 3.9e-37 159.8 369 31.4
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 3.9e-37 159.8 371 31.3
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 6.7e-37 159.1 373 30.0
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 8.8e-37 158.7 367 31.1
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 8.8e-37 158.7 366 29.2
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 8.8e-37 158.7 366 29.5
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 8.8e-37 158.7 367 31.3
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 1.1e-36 158.3 369 31.4
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 1.5e-36 157.9 369 31.7
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 2.0e-36 157.5 364 30.5
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 2.0e-36 157.5 367 30.5
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 2.6e-36 157.1 368 28.8
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 3.3e-36 156.8 367 31.1
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 7.4e-36 155.6 375 30.1
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 1.3e-35 154.8 368 30.4
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.3e-35 154.8 370 31.1
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 1.3e-35 154.8 370 31.1
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 1.3e-35 154.8 368 30.2
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 1.3e-35 154.8 368 30.2
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 4.8e-35 152.9 369 28.7
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 6.3e-35 152.5 152 47.4
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 8.2e-35 152.1 348 31.3
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 8.2e-35 152.1 369 30.1
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 1.1e-34 151.8 369 30.4
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 1.1e-34 151.8 369 30.6
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.1e-34 151.8 370 30.8
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 1.8e-34 151.0 368 32.3
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 7.0e-34 149.1 370 31.4
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 2.6e-33 147.1 365 28.8
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 2.6e-33 147.1 374 30.2
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 2.6e-33 147.1 366 30.9
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 3.4e-33 146.7 369 30.9
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 3.4e-33 146.7 365 30.1
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 5.9e-33 146.0 367 30.5
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 7.7e-33 145.6 374 29.7
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 2.2e-32 144.1 366 30.1
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 3.8e-32 143.3 361 29.1
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 3.8e-32 143.3 371 29.4
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 6.5e-32 142.5 366 27.0
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 1.1e-31 141.7 371 29.9
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 1.4e-31 141.4 366 28.1
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 4.2e-31 139.8 374 29.7
SEGI_39493 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 1.1e-28 131.7 131 47.3
SalBow7G1134 Salvia bowleyana HOM05D001404 ORTHO05D009009 4.8e-27 126.3 125 50.4
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 6.3e-27 125.9 367 27.2
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 1.0e-24 118.6 461 24.5
MD13G1085400 Malus domestica HOM05D001404 ORTHO05D009009 2.2e-24 117.5 86 64.0
ATR0712G115 Amborella trichopoda HOM05D001404 ORTHO05D009009 6.5e-24 115.9 70 74.3
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 1.9e-23 114.4 282 30.1
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 8.0e-22 109.0 292 29.5
TPR.G17205 Trifolium pratense HOM05D001404 ORTHO05D009009 1.3e-19 101.7 70 62.9
HanXRQChr17g0570121 Helianthus annuus HOM05D001404 ORTHO05D009009 2.2e-19 100.9 82 51.2
SEGI_25303 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 3.7e-19 100.1 140 36.4
SEGI_33690 Sequoiadendron giganteum HOM05D001404 ORTHO05D009009 4.1e-18 96.7 128 36.7
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 1.6e-17 94.7 191 32.5
Lsat_1_v5_gn_1_78741 Lactuca sativa HOM05D000538 ORTHO05D009009 1.2e-14 85.1 63 58.7
Duzib251G0488 Durio zibethinus HOM05D001404 ORTHO05D009009 8.0e-14 82.4 64 59.4
Medtr5g036455 Medicago truncatula HOM05D001404 ORTHO05D009009 9.8e-12 75.5 72 48.6
Lsat_1_v5_gn_1_40080 Lactuca sativa HOM05D000207 ORTHO05D000191 1.3e-11 75.1 53 60.4
MELO3C012030.2 Cucumis melo HOM05D001404 ORTHO05D009009 1.6e-09 68.2 35 80.0
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 1.6e-09 68.2 190 26.3
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 1.3e-08 65.1 89 39.3
C06p36300 Brassica napus HOM05D001404 ORTHO05D009009 7.2e-07 59.3 50 56.0


User provided reference genes

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