Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 4.1e-136 488.0 245 100.0
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 3.8e-97 358.6 255 75.3
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 5.5e-96 354.8 251 74.5
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 1.8e-94 349.7 252 74.6
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 1.4e-91 340.1 250 70.4
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 1.0e-89 334.0 253 69.2
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 1.3e-89 333.6 249 69.5
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 5.5e-88 328.2 250 68.4
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 5.5e-88 328.2 250 68.4
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 3.6e-87 325.5 250 68.0
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 1.1e-83 313.9 253 68.4
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 3.4e-82 308.9 263 65.8
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 4.5e-82 308.5 269 63.6
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 1.0e-81 307.4 220 69.1
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 2.2e-81 306.2 245 64.1
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 2.5e-80 302.8 217 69.1
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 5.5e-80 301.6 263 63.1
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 9.4e-80 300.8 220 68.2
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 7.9e-79 297.7 219 69.4
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 7.9e-79 297.7 219 69.4
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 7.9e-79 297.7 255 63.1
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 1.4e-78 297.0 217 68.2
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 3.9e-78 295.4 243 62.6
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 2.8e-76 289.3 217 66.4
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 4.8e-76 288.5 248 62.9
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 1.1e-75 287.3 220 66.4
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 1.8e-75 286.6 221 65.6
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 2.4e-75 286.2 257 61.9
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 3.1e-75 285.8 262 61.1
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 9.1e-75 284.3 267 59.6
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 2.2e-73 279.6 239 63.6
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 1.9e-72 276.6 246 59.8
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 5.5e-72 275.0 251 61.8
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 1.2e-71 273.9 217 66.8
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 2.7e-71 272.7 245 58.0
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 8.0e-71 271.2 237 62.9
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 1.4e-70 270.4 261 57.5
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 1.8e-70 270.0 254 58.3
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 6.7e-70 268.1 308 51.9
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 3.3e-69 265.8 224 62.1
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 1.3e-68 263.8 253 58.9
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 2.2e-68 263.1 249 56.6
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 2.8e-68 262.7 252 57.5
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 6.3e-68 261.5 251 57.4
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 1.8e-67 260.0 240 59.6
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 2.4e-67 259.6 255 56.9
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 5.3e-67 258.5 251 57.0
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 5.3e-67 258.5 251 57.0
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 5.3e-67 258.5 251 57.0
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 5.9e-66 255.0 247 55.9
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 7.7e-66 254.6 247 55.5
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 1.3e-65 253.8 206 67.0
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 1.3e-65 253.8 206 67.5
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 2.9e-65 252.7 246 55.7
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 2.9e-65 252.7 246 55.7
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 8.5e-65 251.1 176 70.5
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 1.5e-64 250.4 244 54.5
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 3.2e-64 249.2 250 54.8
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 3.2e-64 249.2 244 55.7
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 1.2e-63 247.3 224 60.7
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 1.2e-61 240.7 255 54.1
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 2.0e-61 240.0 224 59.8
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 3.4e-61 239.2 162 72.2
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 4.4e-61 238.8 224 59.8
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 9.8e-61 237.7 177 66.1
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 1.7e-60 236.9 234 50.9
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 2.2e-60 236.5 177 65.5
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 6.3e-60 235.0 231 53.2
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 1.8e-59 233.4 243 54.7
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 3.5e-58 229.2 157 72.0
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 1.1e-56 224.2 225 55.6
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 2.5e-56 223.0 231 48.1
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 9.5e-56 221.1 256 48.4
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 2.8e-55 219.5 241 49.4
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 3.6e-55 219.2 225 52.4
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 8.8e-54 214.5 193 59.6
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 1.1e-51 207.6 151 68.2
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.4e-51 207.2 244 45.5
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 5.4e-51 205.3 230 51.3
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 9.2e-51 204.5 247 45.3
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 1.7e-49 200.3 219 47.5
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 3.3e-48 196.1 157 60.5
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 1.6e-47 193.7 252 47.6
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 8.0e-47 191.4 213 51.2
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 1.0e-46 191.0 149 66.4
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 5.2e-46 188.7 340 37.6
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 2.0e-45 186.8 146 63.7
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 1.3e-44 184.1 258 41.1
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 3.2e-43 179.5 261 39.1
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 1.6e-42 177.2 142 66.9
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 2.7e-42 176.4 142 66.9
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 1.3e-41 174.1 142 65.5
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 3.0e-41 172.9 219 41.6
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 8.6e-41 171.4 163 57.7
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 1.9e-40 170.2 141 64.5
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 2.5e-40 169.9 142 62.0
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 2.5e-40 169.9 127 63.8
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 3.3e-40 169.5 143 62.2
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 7.3e-40 168.3 141 62.4
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 9.5e-40 167.9 147 60.5
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 9.5e-40 167.9 141 61.0
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 1.2e-39 167.5 143 61.5
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 1.2e-39 167.5 144 62.5
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 1.6e-39 167.2 143 61.5
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 1.6e-39 167.2 302 34.1
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 6.8e-38 161.8 141 61.7
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 1.2e-37 161.0 241 43.6
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 2.9e-36 156.4 140 56.4
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 6.4e-36 155.2 224 37.9
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 5.4e-35 152.1 154 55.2
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 6.6e-33 145.2 225 38.7
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 5.6e-32 142.1 146 54.1
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 2.8e-31 139.8 149 52.3
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 7.5e-29 131.7 167 42.5
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 2.9e-28 129.8 97 67.0
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 8.1e-23 111.7 64 76.6
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 1.4e-22 110.9 117 44.4
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 1.2e-10 71.2 70 45.7
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 4.6e-10 69.3 78 46.2
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 8.7e-09 65.1 74 39.2


User provided reference genes

Program Settings