Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 3.2e-80 302.0 188 100.0
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 2.6e-61 239.2 188 79.8
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 1.7e-41 173.3 190 68.9
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 2.1e-39 166.4 188 66.5
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.1e-39 166.4 195 71.8
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.8e-38 163.3 193 66.8
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 2.3e-38 162.9 188 54.3
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 5.8e-37 158.3 198 65.2
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 7.5e-37 157.9 190 64.2
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 6.4e-36 154.8 190 60.5
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 9.2e-35 151.0 193 51.8
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 2.1e-34 149.8 190 57.4
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 2.1e-34 149.8 192 53.1
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 7.8e-34 147.9 190 50.5
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 7.8e-34 147.9 192 52.6
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.3e-33 147.1 192 52.6
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.1e-32 144.1 193 50.3
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 1.1e-32 144.1 193 50.3
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 4.3e-32 142.1 195 51.8
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 9.5e-32 141.0 183 61.7
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 2.1e-31 139.8 190 51.6
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.2e-29 134.0 183 58.5
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 2.6e-29 132.9 197 49.7
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 5.8e-29 131.7 183 55.2
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 7.6e-29 131.3 190 47.4
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 2.2e-28 129.8 192 55.7
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 3.8e-28 129.0 193 53.4
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 8.4e-28 127.9 190 45.8
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.2e-26 124.0 154 63.0
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 2.7e-26 122.9 189 46.0
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 4.6e-26 122.1 191 57.6
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 7.8e-26 121.3 183 49.2
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 3.9e-25 119.0 190 45.3
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 1.1e-24 117.5 188 45.7
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.1e-24 117.5 188 44.1
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 2.5e-24 116.3 193 49.7
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 5.6e-24 115.2 190 53.2
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 4.7e-23 112.1 190 55.8
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.8e-22 110.2 189 45.5
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 2.4e-22 109.8 191 50.3
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 6.9e-22 108.2 170 42.9
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 4.4e-21 105.5 156 46.8
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 4.4e-21 105.5 191 42.9
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 5.8e-21 105.1 188 41.0
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 9.9e-21 104.4 199 42.7
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 4.9e-20 102.1 145 62.1
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 4.9e-20 102.1 189 41.3
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 4.9e-20 102.1 192 52.1
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 8.4e-20 101.3 196 48.0
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 1.1e-19 100.9 187 47.1
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 1.4e-19 100.5 199 44.2
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 1.9e-19 100.1 191 48.7
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 7.1e-19 98.2 201 44.3
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 7.1e-19 98.2 201 44.3
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 9.3e-19 97.8 197 48.2
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 9.3e-19 97.8 201 44.3
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 1.2e-18 97.4 188 39.9
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.6e-18 97.1 140 65.7
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 2.1e-18 96.7 195 40.5
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 2.7e-18 96.3 201 45.3
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 3.5e-18 95.9 195 39.0
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 6.0e-18 95.1 200 41.0
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 1.0e-17 94.4 201 45.3
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 1.7e-17 93.6 197 39.1
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 2.3e-17 93.2 196 41.3
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 2.3e-17 93.2 196 41.3
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 3.0e-17 92.8 205 37.1
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 3.9e-17 92.4 193 48.2
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 3.9e-17 92.4 191 37.7
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 5.1e-17 92.0 197 41.6
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 5.1e-17 92.0 197 41.6
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 6.6e-17 91.7 201 46.3
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 6.6e-17 91.7 201 48.8
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 1.1e-16 90.9 198 42.9
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 1.1e-16 90.9 198 42.9
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 1.5e-16 90.5 164 47.6
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 1.9e-16 90.1 198 39.9
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 1.9e-16 90.1 146 43.2
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 1.9e-16 90.1 191 47.6
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 3.3e-16 89.4 200 37.0
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 3.3e-16 89.4 171 46.8
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 4.3e-16 89.0 198 40.4
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 4.3e-16 89.0 198 40.4
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 4.3e-16 89.0 200 39.5
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 5.6e-16 88.6 209 36.8
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 7.3e-16 88.2 164 47.6
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 7.3e-16 88.2 186 43.5
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 9.6e-16 87.8 163 46.0
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 9.6e-16 87.8 193 42.0
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 9.6e-16 87.8 200 39.0
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.6e-15 87.0 194 52.1
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 1.6e-15 87.0 196 42.9
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 2.1e-15 86.7 191 42.9
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 4.8e-15 85.5 198 40.9
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 6.2e-15 85.1 206 36.9
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 6.2e-15 85.1 206 36.9
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 6.2e-15 85.1 191 41.4
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 1.8e-14 83.6 195 36.4
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 2.4e-14 83.2 209 36.4
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 2.4e-14 83.2 209 36.4
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 2.4e-14 83.2 209 36.4
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 2.4e-14 83.2 206 36.4
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 2.4e-14 83.2 204 35.8
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 3.1e-14 82.8 185 41.1
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 4.0e-14 82.4 168 50.0
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 5.3e-14 82.0 148 42.6
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 6.9e-14 81.6 210 37.6
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 6.9e-14 81.6 198 37.9
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.2e-13 80.9 206 35.9
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 1.2e-13 80.9 201 41.3
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 2.0e-13 80.1 192 50.0
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 2.6e-13 79.7 190 37.9
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 3.4e-13 79.3 201 45.8
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 3.4e-13 79.3 188 39.4
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 4.5e-13 79.0 207 36.7
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 1.7e-12 77.0 76 56.6
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 1.7e-12 77.0 82 56.1
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 2.2e-12 76.6 209 33.5
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 2.9e-12 76.3 200 33.5
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 6.4e-12 75.1 190 34.7
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.9e-11 73.6 195 44.6
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.9e-11 73.6 194 35.6
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 3.2e-11 72.8 145 51.7
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 4.2e-11 72.4 75 57.3
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 4.2e-11 72.4 202 34.2
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 4.2e-11 72.4 83 51.8
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 5.4e-11 72.0 147 40.1
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 7.1e-11 71.6 203 35.5
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 7.1e-11 71.6 203 35.5
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 9.3e-11 71.2 193 33.7
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 2.7e-10 69.7 170 31.8
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 3.5e-10 69.3 197 34.0
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 3.5e-10 69.3 76 52.6
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 4.6e-10 68.9 203 35.0
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 4.6e-10 68.9 203 35.0
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 6.0e-10 68.6 79 51.9
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 3.0e-09 66.2 76 52.6
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 5.1e-09 65.5 79 50.6
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 1.3e-07 60.8 77 45.5
unitig_747.g21176 Utricularia gibba HOM05D005097 ORTHO05D006186 1.3e-07 60.8 186 33.9
BNapus_Darmor_BZH_scaffold_256p00010 Brassica napus HOM05D005097 ORTHO05D006186 2.1e-07 60.1 178 37.6
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 2.1e-07 60.1 190 27.9
BcaC08g45865 Brassica carinata HOM05D005097 ORTHO05D006186 3.7e-07 59.3 142 38.7


User provided reference genes

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