Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G175800 Manihot esculenta HOM05D017088 ORTHO05D029635 1.2e-139 500.0 280 100.0
Dinv31534 Davidia involucrata HOM05D002687 ORTHO05D002052 1.3e-16 91.3 177 34.5
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 1.0e-13 81.6 179 31.8
Dinv17088 Davidia involucrata HOM05D002687 ORTHO05D002052 1.0e-13 81.6 188 32.4
Dinv08137 Davidia involucrata HOM05D002687 ORTHO05D002052 1.3e-13 81.3 203 29.1
FvH4_6g41370 Fragaria vesca HOM05D017088 ORTHO05D012721 8.7e-13 78.6 161 33.5
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 8.7e-13 78.6 186 30.6
FAN02G2874 Fragaria x ananassa HOM05D017088 ORTHO05D012721 1.1e-12 78.2 156 34.6
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 4.3e-12 76.3 189 29.6
CSS0030865 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 9.6e-12 75.1 185 28.6
CSS0032031 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 9.6e-12 75.1 185 28.6
FAN14G5034 Fragaria x ananassa HOM05D017088 ORTHO05D012721 1.3e-11 74.7 161 32.9
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.8e-11 73.6 204 27.0
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.8e-11 73.6 204 27.0
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 8.1e-11 72.0 185 28.1
CDE04G2921 Ceratophyllum demersum HOM05D002687 ORTHO05D002052 1.8e-10 70.9 185 29.7
CDE12G0475 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 3.1e-10 70.1 196 30.6
Cfa016686 Carpinus fangiana HOM05D002687 ORTHO05D002052 4.0e-10 69.7 194 26.3
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 1.2e-09 68.2 198 25.8
AUR62001543 Chenopodium quinoa HOM05D002687 ORTHO05D002052 2.6e-09 67.0 187 26.2
ECA238G0184 Erigeron canadensis HOM05D002687 ORTHO05D002052 2.6e-09 67.0 177 30.5
SGA_v2.0_scaffold295G47489 Striga asiatica HOM05D002687 ORTHO05D002052 2.6e-09 67.0 187 26.2
Rhsim13G0195600 Rhododendron simsii HOM05D002687 ORTHO05D002052 4.4e-09 66.2 191 28.3
TWI79G0900 Tripterygium wilfordii HOM05D002687 ORTHO05D002052 4.4e-09 66.2 193 27.5
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 5.8e-09 65.9 185 29.2
Sc21g0006860 Simmondsia chinensis HOM05D002687 ORTHO05D002052 7.6e-09 65.5 189 25.4
Aa31LG5G8690 Aethionema arabicum HOM05D002687 ORTHO05D002052 1.7e-08 64.3 193 26.9
AUR62023990 Chenopodium quinoa HOM05D002687 ORTHO05D002052 1.7e-08 64.3 187 26.7
FvH4_1g21610 Fragaria vesca HOM05D015912 ORTHO05D029635 1.7e-08 64.3 196 27.6
FAN19G0607 Fragaria x ananassa HOM05D015912 ORTHO05D029635 1.7e-08 64.3 196 27.6
CiPaw.10G094600 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.2e-08 63.9 191 29.3
FAN23G2675 Fragaria x ananassa HOM05D015912 ORTHO05D029635 2.2e-08 63.9 191 27.7
MBI01_g04539_MAGBIO Magnolia biondii HOM05D002687 ORTHO05D002052 2.2e-08 63.9 189 29.1
HanXRQChr12g0382031 Helianthus annuus HOM05D002687 ORTHO05D002052 3.8e-08 63.2 218 24.8
AUR62031792 Chenopodium quinoa HOM05D002687 ORTHO05D002052 4.9e-08 62.8 191 26.7
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 4.9e-08 62.8 166 28.9
Medtr7g106130 Medicago truncatula HOM05D008136 ORTHO05D002052 4.9e-08 62.8 160 27.5
Nn2g14281 Nelumbo nucifera HOM05D002687 ORTHO05D002052 4.9e-08 62.8 189 23.8
Rhsim01G0201900 Rhododendron simsii HOM05D002687 ORTHO05D002052 4.9e-08 62.8 192 30.7
CANSAT54G2775 Cannabis sativa HOM05D002687 ORTHO05D002052 6.4e-08 62.4 195 25.1
Lj1g0025222 Lotus japonicus HOM05D008136 ORTHO05D002052 8.4e-08 62.0 160 25.6
EL10Ac7g16313 Beta vulgaris HOM05D002687 ORTHO05D002052 1.1e-07 61.6 163 26.4
Eucgr.J00544 Eucalyptus grandis HOM05D002687 ORTHO05D002052 1.1e-07 61.6 197 25.9
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 1.4e-07 61.2 160 30.0
Thecc.07G029400 Theobroma cacao HOM05D002687 ORTHO05D002052 1.9e-07 60.8 186 28.5
Ah.15g100060 Amaranthus hybridus HOM05D002687 ORTHO05D002052 2.4e-07 60.5 190 25.3
BolC4t23929H Brassica oleracea HOM05D002687 ORTHO05D002052 3.2e-07 60.1 194 25.8
Psat3g029080 Pisum sativum HOM05D008136 ORTHO05D002052 3.2e-07 60.1 164 29.9
BcaC02g10865 Brassica carinata HOM05D002687 ORTHO05D002052 4.2e-07 59.7 194 25.8
C04p24310 Brassica napus HOM05D002687 ORTHO05D002052 4.2e-07 59.7 194 25.8
CiPaw.09G020300 Carya illinoinensis HOM05D002687 ORTHO05D002052 4.2e-07 59.7 195 28.2
Dinv43288 Davidia involucrata HOM05D022454 ORTHO05D015080 4.2e-07 59.7 151 27.8
Cpa.g.sc1142.1 Carica papaya HOM05D002687 ORTHO05D002052 5.4e-07 59.3 185 26.5
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 5.4e-07 59.3 213 25.4
Rhsim04G0206200 Rhododendron simsii HOM05D018759 ORTHO05D012721 5.4e-07 59.3 195 27.7
Ca_09051_v3 Cicer arietinum L. HOM05D008136 ORTHO05D002052 9.3e-07 58.5 161 26.1
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 1.2e-06 58.2 191 24.1
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 4.6e-06 56.2 185 24.9


User provided reference genes

Program Settings