Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 1.2e-135 486.5 244 100.0
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 3.8e-105 385.2 245 75.5
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 1.1e-104 383.6 245 75.1
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 1.4e-104 383.3 244 76.6
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 1.2e-103 380.2 244 74.2
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 2.7e-103 379.0 244 75.0
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 3.5e-103 378.6 245 74.7
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 1.0e-102 377.1 244 74.6
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 6.7e-102 374.4 244 74.2
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 8.7e-102 374.0 243 74.1
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 1.5e-98 363.2 244 73.0
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 1.5e-98 363.2 244 71.3
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 4.5e-98 361.7 244 72.5
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 1.3e-97 360.1 244 70.9
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 1.7e-97 359.8 225 76.0
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 3.8e-97 358.6 244 71.3
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 6.4e-97 357.8 225 75.6
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 1.1e-96 357.1 244 70.9
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 1.1e-96 357.1 232 73.7
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 3.2e-96 355.5 244 70.1
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 4.2e-96 355.1 240 71.7
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 4.2e-96 355.1 225 75.1
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 5.5e-96 354.8 225 74.7
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 7.1e-96 354.4 240 72.1
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 9.3e-96 354.0 245 71.0
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 1.2e-95 353.6 227 74.0
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 2.1e-95 352.8 248 67.3
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 2.1e-95 352.8 240 71.7
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 2.7e-95 352.4 227 75.3
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 7.9e-95 350.9 246 70.3
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 7.9e-95 350.9 240 70.4
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 1.0e-94 350.5 232 72.0
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 2.3e-94 349.4 244 71.3
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 6.7e-94 347.8 232 72.0
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 6.7e-94 347.8 224 75.9
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.1e-93 347.1 244 71.3
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 1.5e-93 346.7 222 75.2
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 1.5e-93 346.7 240 70.4
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 1.9e-93 346.3 247 68.8
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 1.9e-93 346.3 240 69.2
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 1.9e-93 346.3 244 68.9
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 4.3e-93 345.1 244 66.0
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 5.6e-93 344.7 244 69.3
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 7.4e-93 344.4 279 64.9
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 9.6e-93 344.0 241 66.8
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 1.3e-92 343.6 222 74.8
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 1.6e-92 343.2 222 74.3
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 2.1e-92 342.8 222 73.4
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 2.8e-92 342.4 240 68.3
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 2.8e-92 342.4 229 71.6
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 3.7e-92 342.0 244 66.0
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 3.7e-92 342.0 237 68.8
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 6.2e-92 341.3 224 73.2
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 8.2e-92 340.9 242 65.3
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 1.1e-91 340.5 244 65.2
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 1.1e-91 340.5 224 73.2
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.4e-91 340.1 234 70.9
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 1.8e-91 339.7 228 71.5
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 1.8e-91 339.7 240 67.5
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 2.4e-91 339.3 224 70.5
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 2.4e-91 339.3 224 70.5
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 2.4e-91 339.3 224 70.5
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 2.4e-91 339.3 224 70.5
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 3.1e-91 339.0 224 70.1
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 3.1e-91 339.0 224 70.1
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 4.0e-91 338.6 224 70.1
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 4.0e-91 338.6 224 68.8
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 5.3e-91 338.2 224 70.1
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 5.3e-91 338.2 222 73.0
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 2.0e-90 336.3 240 65.8
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 2.6e-90 335.9 224 71.4
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 3.4e-90 335.5 223 70.0
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 7.6e-90 334.3 232 71.1
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 7.6e-90 334.3 236 66.9
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 1.9e-88 329.7 224 71.0
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.7e-87 325.9 228 70.2
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 4.6e-87 325.1 224 69.2
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 7.9e-87 324.3 227 65.2
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 1.3e-86 323.6 223 69.5
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 5.1e-86 321.6 245 62.9
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 5.1e-86 321.6 233 64.8
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 3.3e-85 318.9 277 61.0
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 1.6e-84 316.6 238 61.8
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 1.6e-84 316.6 245 62.0
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 6.3e-84 314.7 222 67.6
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 1.4e-83 313.5 234 66.2
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 3.4e-82 308.9 211 70.6
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 7.6e-82 307.8 227 64.8
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 2.9e-81 305.8 222 63.5
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 2.4e-75 286.2 197 69.5
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.6e-74 282.7 195 70.3
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 7.7e-74 281.2 242 56.6
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 1.3e-73 280.4 220 63.2
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 3.8e-73 278.9 235 60.4
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 1.0e-70 270.8 190 68.9
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 8.5e-65 251.1 184 66.8
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 3.0e-62 242.7 151 76.2
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 2.6e-61 239.6 222 53.6
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 4.4e-61 238.8 224 50.0
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 6.5e-57 224.9 227 53.3
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 6.1e-55 218.4 228 50.9
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 8.0e-55 218.0 226 50.9
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 1.6e-50 203.8 155 61.3
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 1.5e-48 197.2 264 42.4
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 1.5e-48 197.2 139 67.6
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 4.0e-46 189.1 128 69.5
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 2.8e-44 183.0 232 44.8
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 1.1e-43 181.0 240 45.0
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 1.7e-41 173.7 199 49.2
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 4.2e-40 169.1 224 43.3
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 2.6e-37 159.8 207 45.9
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 9.5e-32 141.4 171 46.2
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 9.8e-29 131.3 268 34.3
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 1.3e-25 120.9 106 60.4
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 2.3e-25 120.2 80 70.0
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 1.3e-20 104.4 73 64.4
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 1.7e-17 94.0 64 68.8
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 8.1e-15 85.1 64 64.1
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 1.2e-13 81.3 127 40.2
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 6.0e-10 68.9 47 68.1
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 6.0e-10 68.9 50 66.0
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 4.3e-08 62.8 47 57.4
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 9.5e-08 61.6 118 30.5
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 6.2e-07 58.9 39 66.7


User provided reference genes

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