Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G174400 Manihot esculenta HOM05D002160 ORTHO05D002012 1.3e-40 169.5 101 100.0
Manes.07G091300 Manihot esculenta HOM05D002160 ORTHO05D002012 4.6e-33 144.4 92 96.7
Manes.01G174200 Manihot esculenta HOM05D002160 ORTHO05D002012 6.5e-27 124.0 79 98.7
Manes.07G090700 Manihot esculenta HOM05D002160 ORTHO05D002012 9.4e-26 120.2 69 97.1
Manes.02G133200 Manihot esculenta HOM05D002160 ORTHO05D002012 1.2e-20 103.2 79 88.6
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 3.9e-16 88.2 77 66.2
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 3.9e-16 88.2 77 66.2
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 3.9e-16 88.2 77 66.2
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 8.8e-16 87.0 82 69.5
CSS0035762 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 8.8e-16 87.0 78 65.4
Dinv12424 Davidia involucrata HOM05D002160 ORTHO05D002012 2.0e-15 85.9 77 64.9
Cfa017382 Carpinus fangiana HOM05D002160 ORTHO05D002012 2.6e-15 85.5 87 69.0
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 2.6e-15 85.5 81 66.7
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 2.6e-15 85.5 79 62.0
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 4.4e-15 84.7 83 66.3
Hma1.2p1_0035F.1_g022400 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 5.7e-15 84.3 78 61.5
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 5.7e-15 84.3 79 67.1
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 7.4e-15 84.0 81 60.5
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 7.4e-15 84.0 81 65.4
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 7.4e-15 84.0 82 65.9
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 9.7e-15 83.6 81 66.7
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 9.7e-15 83.6 81 66.7
Haze_20789 Corylus avellana HOM05D002160 ORTHO05D002012 9.7e-15 83.6 101 63.4
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 9.7e-15 83.6 81 65.4
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.3e-14 83.2 81 66.7
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 1.7e-14 82.8 81 66.7
CSS0001348 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.7e-14 82.8 78 62.8
TWI31G0007 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.7e-14 82.8 81 64.2
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 2.8e-14 82.0 81 65.4
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 2.8e-14 82.0 81 64.2
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 2.8e-14 82.0 82 65.9
TWI31G0178 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 4.8e-14 81.3 81 63.0
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 6.3e-14 80.9 81 64.2
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 6.3e-14 80.9 81 63.0
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 8.2e-14 80.5 81 63.0
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 1.1e-13 80.1 83 63.9
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 1.4e-13 79.7 81 65.4
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 1.8e-13 79.3 81 65.4
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 1.8e-13 79.3 81 61.7
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.8e-13 79.3 81 63.0
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 2.4e-13 79.0 85 61.2
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 2.4e-13 79.0 82 63.4
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 3.1e-13 78.6 81 63.0
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 4.1e-13 78.2 84 63.1
Gohir.A11G326800 Gossypium hirsutum HOM05D002160 ORTHO05D002012 5.3e-13 77.8 79 67.1
Gorai.007G376000 Gossypium raimondii HOM05D002160 ORTHO05D002012 7.0e-13 77.4 77 54.5
Hma1.2p1_0418F.1_g149080 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 7.0e-13 77.4 78 59.0
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 7.0e-13 77.4 83 61.4
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 9.1e-13 77.0 81 63.0
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.6e-12 76.3 81 50.6
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 1.6e-12 76.3 84 59.5
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.0e-12 75.9 81 60.5
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 2.0e-12 75.9 81 59.3
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 2.0e-12 75.9 81 63.0
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 2.6e-12 75.5 82 61.0
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 2.6e-12 75.5 82 61.0
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 3.5e-12 75.1 84 59.5
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 4.5e-12 74.7 77 53.2
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 5.9e-12 74.3 81 49.4
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 5.9e-12 74.3 82 63.4
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 5.9e-12 74.3 82 54.9
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 7.7e-12 73.9 81 61.7
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 1.0e-11 73.6 81 61.7
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.3e-11 73.2 85 58.8
Hma1.2p1_0035F.1_g022410 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 1.3e-11 73.2 80 47.5
QL01p032020 Quercus lobata HOM05D002160 ORTHO05D002012 1.3e-11 73.2 78 71.8
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 1.7e-11 72.8 81 60.5
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 2.2e-11 72.4 82 59.8
Eucgr.A01262 Eucalyptus grandis HOM05D002160 ORTHO05D002012 2.2e-11 72.4 89 53.9
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 2.2e-11 72.4 79 65.8
Haze_11621 Corylus avellana HOM05D002160 ORTHO05D002012 2.9e-11 72.0 81 64.2
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 3.8e-11 71.6 79 59.5
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 5.0e-11 71.2 75 48.0
MBI14_g20106_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 6.5e-11 70.9 64 71.9
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 6.5e-11 70.9 80 60.0
Manes.08G079293 Manihot esculenta HOM05D002160 ORTHO05D002012 8.5e-11 70.5 81 60.5
ClCG10G021120 Citrullus lanatus HOM05D002160 ORTHO05D002012 1.5e-10 69.7 82 68.3
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 1.9e-10 69.3 81 58.0
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 1.9e-10 69.3 81 58.0
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 1.9e-10 69.3 78 60.3
Sed0014826 Sechium edule HOM05D002160 ORTHO05D002012 2.5e-10 68.9 82 50.0
MD04G1128900 Malus domestica HOM05D002160 ORTHO05D002012 3.2e-10 68.6 78 59.0
Eucgr.J02054 Eucalyptus grandis HOM05D002160 ORTHO05D002012 4.2e-10 68.2 62 71.0
Potri.019G100001 Populus trichocarpa HOM05D002160 ORTHO05D002012 4.2e-10 68.2 57 73.7
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 4.2e-10 68.2 83 60.2
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 7.2e-10 67.4 83 49.4
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 7.2e-10 67.4 81 59.3
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 1.2e-09 66.6 84 58.3
Cpa.g.sc81.153 Carica papaya HOM05D002160 ORTHO05D002012 1.2e-09 66.6 76 44.7
GSVIVG01024970001 Vitis vinifera HOM05D002160 ORTHO05D002012 1.6e-09 66.2 84 64.3
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 2.1e-09 65.9 79 55.7
Peaxi162Scf00774g00011 Petunia axillaris HOM05D002160 ORTHO05D002012 2.1e-09 65.9 79 70.9
Potri.001G040200 Populus trichocarpa HOM05D002160 ORTHO05D002012 2.7e-09 65.5 57 71.9
Potri.001G041268 Populus trichocarpa HOM05D002160 ORTHO05D002012 2.7e-09 65.5 57 71.9
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 3.6e-09 65.1 80 60.0
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 3.6e-09 65.1 81 58.0
Actinidia05312 Actinidia chinensis HOM05D002160 ORTHO05D002012 4.7e-09 64.7 79 59.5
AL6G11600 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 4.7e-09 64.7 80 60.0
Cc01_g12850 Coffea canephora HOM05D002160 ORTHO05D002012 4.7e-09 64.7 77 53.2
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 4.7e-09 64.7 83 59.0
DCAR_005972 Daucus carota HOM05D002160 ORTHO05D002012 8.0e-09 63.9 61 67.2
Hma1.2p1_0418F.1_g149100 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 1.0e-08 63.5 78 56.4
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 1.0e-08 63.5 80 53.8
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 1.0e-08 63.5 80 53.8
Aqoxy2G02118 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 1.4e-08 63.2 58 53.4
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 1.4e-08 63.2 83 56.6
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 1.4e-08 63.2 79 53.2
Thhalv10022195m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 1.4e-08 63.2 86 57.0
Potri.013G131200 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.8e-08 62.8 57 70.2
AT5G02380 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 2.3e-08 62.4 80 58.8
CiPaw.13G094500 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.3e-08 62.4 80 66.2
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 2.3e-08 62.4 80 53.8
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 3.0e-08 62.0 83 56.6
Cfa011500 Carpinus fangiana HOM05D002160 ORTHO05D002012 3.0e-08 62.0 54 59.3
GSVIVG01027808001 Vitis vinifera HOM05D002160 ORTHO05D002012 3.0e-08 62.0 84 54.8
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 4.0e-08 61.6 83 45.8
Psat3g140160 Pisum sativum HOM05D002160 ORTHO05D002012 4.0e-08 61.6 81 58.0
Atru.chr3.3900 Acer truncatum HOM05D002160 ORTHO05D002012 5.2e-08 61.2 82 52.4
Atru.chr3.3901 Acer truncatum HOM05D002160 ORTHO05D002012 5.2e-08 61.2 82 52.4
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 5.2e-08 61.2 81 56.8
DCAR_014852 Daucus carota HOM05D002160 ORTHO05D002012 5.2e-08 61.2 79 44.3
Dinv35604 Davidia involucrata HOM05D002160 ORTHO05D002012 5.2e-08 61.2 57 56.1
PSO151G0155 Papaver somniferum HOM05D002160 ORTHO05D002012 5.2e-08 61.2 61 65.6
PSO339G0803 Papaver somniferum HOM05D002160 ORTHO05D002012 5.2e-08 61.2 61 65.6
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 6.7e-08 60.8 83 45.8
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 6.7e-08 60.8 83 45.8
Oeu051930.1 Olea europaea HOM05D002160 ORTHO05D002012 1.1e-07 60.1 86 40.7
PSO339G1859 Papaver somniferum HOM05D002160 ORTHO05D002012 1.1e-07 60.1 61 70.5
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 1.5e-07 59.7 83 44.6
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 1.5e-07 59.7 83 44.6
Aqoxy4G02920 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 2.0e-07 59.3 81 51.9
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 2.0e-07 59.3 83 44.6
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 2.0e-07 59.3 83 44.6
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 2.0e-07 59.3 83 44.6
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 2.0e-07 59.3 83 44.6
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 2.0e-07 59.3 83 44.6
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 2.0e-07 59.3 86 46.5
CANSAT54G0665 Cannabis sativa HOM05D002160 ORTHO05D002012 2.6e-07 58.9 79 50.6
Haze_24095 Corylus avellana HOM05D002160 ORTHO05D002012 2.6e-07 58.9 78 56.4
MD06G1098000 Malus domestica HOM05D002160 ORTHO05D002012 2.6e-07 58.9 77 53.2
SEGI_13620 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 2.6e-07 58.9 83 50.6
TWI74G0912 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.6e-07 58.9 78 55.1
CSS0026015 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 3.3e-07 58.5 96 53.1
Os01g0149800 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 3.3e-07 58.5 80 61.2
BcaB01g06159 Brassica carinata HOM05D002160 ORTHO05D002012 4.4e-07 58.2 83 44.6
Nn1g03685 Nelumbo nucifera HOM05D002160 ORTHO05D002012 4.4e-07 58.2 58 56.9
Prupe.6G077800 Prunus persica HOM05D002160 ORTHO05D002012 4.4e-07 58.2 79 54.4
CSS0049920 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D024696 5.7e-07 57.8 78 70.5
MBI17_g25955_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 5.7e-07 57.8 58 50.0
PSO151G0128 Papaver somniferum HOM05D002160 ORTHO05D002012 5.7e-07 57.8 61 67.2
Migut.L01944 Erythranthe guttata HOM05D002160 ORTHO05D002012 7.5e-07 57.4 82 52.4
SEGI_28885 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 7.5e-07 57.4 88 46.6
CSS0041307 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D024696 9.7e-07 57.0 78 69.2
PGSC0003DMG401008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 2.2e-06 55.8 57 68.4
TWI53G0132 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.2e-06 55.8 62 46.8
vmacro20155 Vaccinium macrocarpon HOM05D002160 ORTHO05D002012 2.2e-06 55.8 48 81.2
Prupe.6G077900 Prunus persica HOM05D002160 ORTHO05D002012 3.7e-06 55.1 54 51.9
MD11G1109200 Malus domestica HOM05D015563 ORTHO05D002012 4.8e-06 54.7 38 68.4
Glyma.18G180800 Glycine max HOM05D002160 ORTHO05D002012 6.3e-06 54.3 57 50.9
CSS0046936 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D024696 8.2e-06 53.9 78 69.2
Haze_24094 Corylus avellana HOM05D002160 ORTHO05D002012 8.2e-06 53.9 81 58.0
MBI13_g34921_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 8.2e-06 53.9 55 61.8


User provided reference genes

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