Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G174200 Manihot esculenta HOM05D002160 ORTHO05D002012 6.6e-27 123.6 79 100.0
Manes.01G174400 Manihot esculenta HOM05D002160 ORTHO05D002012 1.1e-26 122.9 79 98.7
Manes.07G091300 Manihot esculenta HOM05D002160 ORTHO05D002012 1.1e-24 116.3 79 96.2
Manes.02G133200 Manihot esculenta HOM05D002160 ORTHO05D002012 4.6e-20 100.9 79 87.3
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 6.9e-16 87.0 77 66.2
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 6.9e-16 87.0 77 66.2
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 6.9e-16 87.0 77 66.2
CSS0035762 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.5e-15 85.9 78 65.4
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 3.4e-15 84.7 82 68.3
Dinv12424 Davidia involucrata HOM05D002160 ORTHO05D002012 3.4e-15 84.7 77 64.9
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 7.6e-15 83.6 81 65.4
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 9.9e-15 83.2 79 60.8
Hma1.2p1_0035F.1_g022400 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 1.3e-14 82.8 78 61.5
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.7e-14 82.4 83 65.1
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 2.2e-14 82.0 79 65.8
CSS0001348 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 2.9e-14 81.6 78 62.8
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.9e-14 81.6 81 59.3
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.9e-14 81.6 81 64.2
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 2.9e-14 81.6 82 64.6
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 3.8e-14 81.3 81 65.4
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 3.8e-14 81.3 81 65.4
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.8e-14 81.3 81 64.2
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 3.8e-14 81.3 81 64.2
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 4.9e-14 80.9 81 65.4
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 6.4e-14 80.5 81 65.4
TWI31G0007 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 6.4e-14 80.5 81 63.0
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 1.1e-13 79.7 81 64.2
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 1.1e-13 79.7 82 64.6
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 1.9e-13 79.0 83 63.9
TWI31G0178 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.9e-13 79.0 81 61.7
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 2.4e-13 78.6 81 63.0
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 2.4e-13 78.6 81 61.7
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 3.2e-13 78.2 81 61.7
Manes.07G090700 Manihot esculenta HOM05D002160 ORTHO05D002012 4.2e-13 77.8 47 100.0
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 4.2e-13 77.8 81 64.2
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 7.1e-13 77.0 84 63.1
Dinv37174 Davidia involucrata HOM05D002160 ORTHO05D002012 7.1e-13 77.0 81 64.2
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 7.1e-13 77.0 81 60.5
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 7.1e-13 77.0 81 61.7
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 9.3e-13 76.6 82 62.2
Cfa017382 Carpinus fangiana HOM05D002160 ORTHO05D002012 1.2e-12 76.3 81 69.1
Haze_20789 Corylus avellana HOM05D002160 ORTHO05D002012 1.2e-12 76.3 81 70.4
Hma1.2p1_0418F.1_g149080 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 1.2e-12 76.3 78 59.0
Phvul.008G101800 Phaseolus vulgaris HOM05D002160 ORTHO05D002012 1.2e-12 76.3 81 61.7
Gohir.A11G326800 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.6e-12 75.9 79 65.8
Gorai.007G376000 Gossypium raimondii HOM05D002160 ORTHO05D002012 2.1e-12 75.5 77 53.2
COL.COLO4_14799 Corchorus olitorius HOM05D002160 ORTHO05D002012 2.7e-12 75.1 81 61.7
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 2.7e-12 75.1 83 60.2
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 3.5e-12 74.7 84 59.5
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 6.0e-12 73.9 81 49.4
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 7.9e-12 73.6 81 59.3
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 7.9e-12 73.6 81 58.0
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 7.9e-12 73.6 84 59.5
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 7.9e-12 73.6 81 61.7
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 1.0e-11 73.2 82 59.8
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 1.0e-11 73.2 82 59.8
Cc06_g02650 Coffea canephora HOM05D002160 ORTHO05D002012 1.3e-11 72.8 82 63.4
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.3e-11 72.8 77 51.9
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 2.3e-11 72.0 81 48.1
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 2.3e-11 72.0 82 53.7
Hma1.2p1_0035F.1_g022410 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 3.0e-11 71.6 80 47.5
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 3.0e-11 71.6 81 60.5
Sabra06G0064700 Salix brachista HOM05D002160 ORTHO05D002012 3.9e-11 71.2 81 60.5
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 5.1e-11 70.9 81 59.3
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 5.1e-11 70.9 85 57.6
QL01p032020 Quercus lobata HOM05D002160 ORTHO05D002012 5.1e-11 70.9 78 70.5
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 6.7e-11 70.5 80 60.0
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 6.7e-11 70.5 79 64.6
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 8.7e-11 70.1 82 58.5
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 8.7e-11 70.1 75 46.7
Haze_11621 Corylus avellana HOM05D002160 ORTHO05D002012 1.5e-10 69.3 81 63.0
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 1.5e-10 69.3 79 58.2
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 1.9e-10 68.9 80 58.8
MBI14_g20106_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 2.5e-10 68.6 64 70.3
Manes.08G079293 Manihot esculenta HOM05D002160 ORTHO05D002012 2.5e-10 68.6 81 59.3
ClCG10G021120 Citrullus lanatus HOM05D002160 ORTHO05D002012 4.3e-10 67.8 82 67.1
Eucgr.A01262 Eucalyptus grandis HOM05D002160 ORTHO05D002012 5.6e-10 67.4 83 55.4
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 7.4e-10 67.0 81 56.8
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 7.4e-10 67.0 81 56.8
Potri.019G100001 Populus trichocarpa HOM05D002160 ORTHO05D002012 7.4e-10 67.0 57 71.9
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 7.4e-10 67.0 78 59.0
Sed0014826 Sechium edule HOM05D002160 ORTHO05D002012 9.6e-10 66.6 82 48.8
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 9.6e-10 66.6 83 60.2
MD04G1128900 Malus domestica HOM05D002160 ORTHO05D002012 1.3e-09 66.2 78 57.7
Cpa.g.sc81.153 Carica papaya HOM05D002160 ORTHO05D002012 1.6e-09 65.9 76 44.7
Eucgr.J02054 Eucalyptus grandis HOM05D002160 ORTHO05D002012 1.6e-09 65.9 62 69.4
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 1.6e-09 65.9 83 49.4
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 2.1e-09 65.5 84 58.3
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 2.8e-09 65.1 81 58.0
Peaxi162Scf00774g00011 Petunia axillaris HOM05D002160 ORTHO05D002012 3.7e-09 64.7 79 70.9
Potri.001G040200 Populus trichocarpa HOM05D002160 ORTHO05D002012 4.8e-09 64.3 57 70.2
Potri.001G041268 Populus trichocarpa HOM05D002160 ORTHO05D002012 4.8e-09 64.3 57 70.2
GSVIVG01024970001 Vitis vinifera HOM05D002160 ORTHO05D002012 4.8e-09 64.3 84 63.1
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 6.2e-09 63.9 81 58.0
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 6.2e-09 63.9 79 54.4
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 8.1e-09 63.5 80 60.0
AL6G11600 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 1.1e-08 63.2 80 60.0
Cc01_g12850 Coffea canephora HOM05D002160 ORTHO05D002012 1.1e-08 63.2 77 53.2
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 1.1e-08 63.2 83 59.0
DCAR_005972 Daucus carota HOM05D002160 ORTHO05D002012 1.4e-08 62.8 61 67.2
Actinidia05312 Actinidia chinensis HOM05D002160 ORTHO05D002012 1.8e-08 62.4 79 58.2
Aqoxy2G02118 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 1.8e-08 62.4 58 51.7
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 1.8e-08 62.4 83 56.6
Hma1.2p1_0418F.1_g149100 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 2.4e-08 62.0 78 56.4
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 3.1e-08 61.6 79 53.2
Potri.013G131200 Populus trichocarpa HOM05D002160 ORTHO05D002012 3.1e-08 61.6 57 68.4
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 3.1e-08 61.6 80 52.5
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 3.1e-08 61.6 80 52.5
Cfa011500 Carpinus fangiana HOM05D002160 ORTHO05D002012 4.0e-08 61.2 54 57.4
AT5G02380 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 5.3e-08 60.8 80 58.8
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 5.3e-08 60.8 83 56.6
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 6.9e-08 60.5 83 45.8
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 6.9e-08 60.5 80 52.5
CiPaw.13G094500 Carya illinoinensis HOM05D002160 ORTHO05D002012 9.0e-08 60.1 80 65.0
Dinv35604 Davidia involucrata HOM05D002160 ORTHO05D002012 9.0e-08 60.1 57 54.4
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 1.2e-07 59.7 83 45.8
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 1.2e-07 59.7 83 45.8
GSVIVG01027808001 Vitis vinifera HOM05D002160 ORTHO05D002012 1.2e-07 59.7 84 53.6
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 1.5e-07 59.3 81 55.6
DCAR_014852 Daucus carota HOM05D002160 ORTHO05D002012 1.5e-07 59.3 79 44.3
Psat3g140160 Pisum sativum HOM05D002160 ORTHO05D002012 1.5e-07 59.3 81 56.8
Atru.chr3.3900 Acer truncatum HOM05D002160 ORTHO05D002012 2.0e-07 58.9 82 51.2
Atru.chr3.3901 Acer truncatum HOM05D002160 ORTHO05D002012 2.0e-07 58.9 82 51.2
Thhalv10022195m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 2.0e-07 58.9 86 57.0
PSO151G0155 Papaver somniferum HOM05D002160 ORTHO05D002012 2.0e-07 58.9 61 63.9
PSO339G0803 Papaver somniferum HOM05D002160 ORTHO05D002012 2.0e-07 58.9 61 63.9
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 2.6e-07 58.5 83 44.6
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 2.6e-07 58.5 83 44.6
Oeu051930.1 Olea europaea HOM05D002160 ORTHO05D002012 2.6e-07 58.5 86 40.7
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 3.4e-07 58.2 83 44.6
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 3.4e-07 58.2 83 44.6
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 3.4e-07 58.2 83 44.6
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 3.4e-07 58.2 83 44.6
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 3.4e-07 58.2 83 44.6
MD06G1098000 Malus domestica HOM05D002160 ORTHO05D002012 4.5e-07 57.8 77 53.2
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 4.5e-07 57.8 86 46.5
Os01g0149800 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 4.5e-07 57.8 80 61.2
PSO339G1859 Papaver somniferum HOM05D002160 ORTHO05D002012 4.5e-07 57.8 61 68.9
SEGI_13620 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 4.5e-07 57.8 83 50.6
TWI74G0912 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 5.8e-07 57.4 78 55.1
Aqoxy4G02920 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 7.6e-07 57.0 81 50.6
MBI17_g25955_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 7.6e-07 57.0 58 50.0
Nn1g03685 Nelumbo nucifera HOM05D002160 ORTHO05D002012 7.6e-07 57.0 58 55.2
BcaB01g06159 Brassica carinata HOM05D002160 ORTHO05D002012 9.9e-07 56.6 83 44.6
CANSAT54G0665 Cannabis sativa HOM05D002160 ORTHO05D002012 9.9e-07 56.6 79 49.4
Haze_24095 Corylus avellana HOM05D002160 ORTHO05D002012 9.9e-07 56.6 78 55.1
CSS0026015 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.3e-06 56.2 96 52.1
CSS0049920 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D024696 1.3e-06 56.2 78 70.5
Migut.L01944 Erythranthe guttata HOM05D002160 ORTHO05D002012 1.3e-06 56.2 82 52.4
Prupe.6G077800 Prunus persica HOM05D002160 ORTHO05D002012 1.7e-06 55.8 79 53.2
CSS0041307 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D024696 2.2e-06 55.5 78 69.2
vmacro20155 Vaccinium macrocarpon HOM05D002160 ORTHO05D002012 3.8e-06 54.7 48 81.2
MD11G1109200 Malus domestica HOM05D015563 ORTHO05D002012 6.4e-06 53.9 38 65.8
Prupe.6G077900 Prunus persica HOM05D002160 ORTHO05D002012 6.4e-06 53.9 54 50.0
Glyma.18G180800 Glycine max HOM05D002160 ORTHO05D002012 8.4e-06 53.5 57 49.1
SEGI_28885 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 8.4e-06 53.5 81 49.4
PGSC0003DMG401008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 8.4e-06 53.5 57 66.7


User provided reference genes

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