Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 1.0e-44 183.0 86 100.0
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 2.5e-43 178.3 86 96.5
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 1.0e-33 146.4 85 78.8
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 4.4e-32 141.0 84 79.8
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 7.4e-32 140.2 85 75.3
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 1.3e-31 139.4 84 78.6
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 1.3e-31 139.4 85 75.3
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 1.7e-31 139.0 84 78.6
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.8e-31 138.3 84 77.4
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 2.8e-31 138.3 84 77.4
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 2.8e-31 138.3 86 75.6
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 4.8e-31 137.5 84 77.4
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 4.8e-31 137.5 84 77.4
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 1.4e-30 136.0 84 72.6
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.4e-30 136.0 84 76.2
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 1.8e-30 135.6 84 77.4
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 5.3e-30 134.0 86 69.8
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 9.1e-30 133.3 86 69.8
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 9.1e-30 133.3 86 69.8
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 1.2e-29 132.9 86 69.8
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 7.7e-29 130.2 86 68.6
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 1.0e-28 129.8 86 67.4
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 1.3e-28 129.4 84 69.0
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 2.2e-28 128.6 80 72.5
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 2.2e-28 128.6 80 71.2
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 2.2e-28 128.6 86 65.1
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 3.8e-28 127.9 86 65.1
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 3.8e-28 127.9 86 65.1
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 3.8e-28 127.9 86 65.1
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 8.5e-28 126.7 84 66.7
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 8.5e-28 126.7 86 65.1
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 1.9e-27 125.6 85 65.9
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 2.5e-27 125.2 86 64.0
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 4.2e-27 124.4 95 62.1
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 7.2e-27 123.6 84 71.4
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 1.6e-26 122.5 98 59.2
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 1.6e-26 122.5 86 68.6
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 2.1e-26 122.1 86 65.1
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 2.1e-26 122.1 86 69.8
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 3.6e-26 121.3 86 64.0
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 3.6e-26 121.3 84 60.7
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 3.6e-26 121.3 86 65.1
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 3.6e-26 121.3 86 61.6
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 3.6e-26 121.3 86 64.0
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 4.7e-26 120.9 86 68.6
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 6.1e-26 120.6 86 64.0
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 8.0e-26 120.2 79 67.1
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 8.0e-26 120.2 79 67.1
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 8.0e-26 120.2 81 64.2
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.0e-25 119.8 79 67.1
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.0e-25 119.8 79 67.1
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 1.0e-25 119.8 86 62.8
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 1.0e-25 119.8 79 65.8
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 1.0e-25 119.8 79 65.8
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 1.0e-25 119.8 82 64.6
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.4e-25 119.4 78 66.7
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 1.8e-25 119.0 86 64.0
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 3.0e-25 118.2 84 60.7
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 5.2e-25 117.5 86 62.8
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 6.7e-25 117.1 84 60.7
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 1.5e-24 115.9 71 71.8
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 1.5e-24 115.9 71 71.8
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 2.6e-24 115.2 75 65.3
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 2.6e-24 115.2 75 65.3
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 2.6e-24 115.2 79 62.0
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 3.3e-24 114.8 95 57.9
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 3.3e-24 114.8 115 50.4
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 4.4e-24 114.4 86 60.5
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 4.4e-24 114.4 84 60.7
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 5.7e-24 114.0 95 57.9
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 5.7e-24 114.0 84 65.5
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 5.7e-24 114.0 86 55.8
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 5.7e-24 114.0 85 57.6
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 7.5e-24 113.6 80 63.8
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 9.7e-24 113.2 68 73.5
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.3e-23 112.8 86 57.0
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.7e-23 112.5 73 65.8
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 1.7e-23 112.5 86 59.3
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 1.7e-23 112.5 86 59.3
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 3.7e-23 111.3 86 59.3
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 3.7e-23 111.3 86 54.7
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 3.7e-23 111.3 86 58.1
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 3.7e-23 111.3 77 64.9
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 6.3e-23 110.5 84 65.5
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 6.3e-23 110.5 86 54.7
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 8.3e-23 110.2 86 59.3
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 8.3e-23 110.2 76 59.2
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.4e-22 109.4 86 58.1
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.8e-22 109.0 73 65.8
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 2.4e-22 108.6 84 53.6
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 4.1e-22 107.8 84 57.1
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 4.1e-22 107.8 68 70.6
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 5.3e-22 107.5 69 68.1
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 7.0e-22 107.1 86 52.3
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 9.1e-22 106.7 68 67.6
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 1.2e-21 106.3 76 59.2
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.6e-21 105.9 79 58.2
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.6e-21 105.9 84 54.8
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.0e-21 105.5 84 64.3
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 2.0e-21 105.5 86 55.8
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 2.0e-21 105.5 86 58.1
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 3.5e-21 104.8 86 54.7
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 3.5e-21 104.8 79 55.7
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 4.5e-21 104.4 86 54.7
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 1.0e-20 103.2 72 58.3
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 1.3e-20 102.8 86 54.7
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 1.3e-20 102.8 86 57.0
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 1.3e-20 102.8 74 59.5
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 1.3e-20 102.8 86 55.8
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 1.3e-20 102.8 88 55.7
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.3e-20 102.8 80 56.2
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 2.2e-20 102.1 87 58.6
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 2.2e-20 102.1 68 64.7
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 2.2e-20 102.1 86 55.8
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 2.2e-20 102.1 80 55.0
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 2.2e-20 102.1 80 55.0
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 6.5e-20 100.5 63 66.7
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 6.5e-20 100.5 58 74.1
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 1.5e-19 99.4 85 54.1
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 2.5e-19 98.6 73 61.6
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 2.5e-19 98.6 68 63.2
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 3.2e-19 98.2 90 52.2
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 4.2e-19 97.8 84 52.4
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 5.5e-19 97.4 70 62.9
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 1.2e-18 96.3 84 54.8
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 1.6e-18 95.9 83 45.8
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 1.6e-18 95.9 72 58.3
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 2.1e-18 95.5 84 51.2
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 3.6e-18 94.7 58 69.0
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 6.1e-18 94.0 71 53.5
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 8.0e-18 93.6 86 54.7
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 1.4e-17 92.8 84 52.4
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 4.0e-17 91.3 54 74.1
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 8.8e-17 90.1 84 50.0
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 1.5e-16 89.4 72 54.2
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 2.6e-16 88.6 68 57.4
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 5.7e-16 87.4 54 66.7
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 9.8e-16 86.7 99 47.5
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 9.8e-16 86.7 85 45.9
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 9.8e-16 86.7 68 57.4
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 1.3e-15 86.3 53 69.8
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 4.8e-15 84.3 48 72.9
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 8.3e-15 83.6 60 60.0
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 1.1e-14 83.2 99 45.5
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.1e-14 83.2 44 81.8
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 1.1e-14 83.2 74 56.8
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 1.4e-14 82.8 98 44.9
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 2.0e-13 79.0 52 65.4
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 5.9e-13 77.4 68 54.4
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 5.5e-11 70.9 62 45.2
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 5.5e-11 70.9 72 48.6
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 1.4e-09 66.2 57 50.9
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 5.2e-09 64.3 59 52.5
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 1.2e-08 63.2 48 60.4
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 7.5e-08 60.5 59 52.5
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 1.3e-07 59.7 57 40.4
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 8.3e-07 57.0 60 40.0
Cfa026385 Carpinus fangiana HOM05D004551 ORTHO05D005262 1.1e-06 56.6 46 54.3
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 1.1e-06 56.6 47 46.8


User provided reference genes

Program Settings