Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 1.1e-109 400.2 230 100.0
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 4.7e-89 331.6 228 81.6
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.4e-85 320.1 232 79.7
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 5.0e-83 311.6 235 74.0
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 3.2e-82 308.9 227 75.3
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 3.6e-81 305.4 270 67.4
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.8e-80 303.1 235 74.9
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 3.0e-80 302.4 226 77.4
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 4.0e-80 302.0 228 74.1
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 5.2e-80 301.6 235 73.6
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 6.7e-80 301.2 227 74.4
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.2e-79 300.4 225 73.8
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 1.5e-79 300.1 227 73.6
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.5e-79 300.1 227 72.2
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 2.0e-79 299.7 225 73.8
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 9.7e-79 297.4 225 74.2
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 2.8e-78 295.8 227 74.0
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 6.3e-78 294.7 224 73.7
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 1.1e-77 293.9 233 72.1
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 1.1e-77 293.9 227 68.3
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 1.4e-77 293.5 227 72.2
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 3.1e-77 292.4 227 74.0
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 2.7e-76 289.3 227 74.0
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 5.9e-76 288.1 233 71.2
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 1.0e-75 287.3 227 70.0
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.7e-75 286.6 227 70.9
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 2.2e-75 286.2 227 73.1
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 2.9e-75 285.8 228 68.0
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 5.0e-75 285.0 228 72.4
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 5.0e-75 285.0 233 72.1
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 6.5e-75 284.6 228 70.6
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 1.1e-74 283.9 232 66.8
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 1.5e-74 283.5 231 67.1
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.5e-74 283.5 228 70.6
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 1.9e-74 283.1 227 70.9
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 2.5e-74 282.7 228 70.6
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 3.2e-74 282.3 227 71.4
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 3.2e-74 282.3 226 68.6
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 5.5e-74 281.6 233 66.1
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.2e-73 280.4 227 71.4
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 1.6e-73 280.0 226 70.8
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 3.6e-73 278.9 226 67.7
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 3.6e-73 278.9 224 69.6
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 4.7e-73 278.5 260 63.8
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 6.1e-73 278.1 231 60.2
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 6.1e-73 278.1 233 61.8
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 8.0e-73 277.7 226 68.1
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 8.0e-73 277.7 230 62.2
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 1.0e-72 277.3 227 60.8
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 2.3e-72 276.2 227 60.8
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.3e-72 276.2 233 61.4
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.3e-72 276.2 235 61.3
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 3.0e-72 275.8 173 76.3
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 3.0e-72 275.8 228 67.5
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 4.0e-72 275.4 224 68.3
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 5.2e-72 275.0 226 62.4
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 5.2e-72 275.0 226 69.5
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 6.8e-72 274.6 215 64.7
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 6.8e-72 274.6 220 63.2
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 6.8e-72 274.6 226 62.4
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 8.8e-72 274.2 225 61.8
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 1.2e-71 273.9 225 64.4
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 1.2e-71 273.9 227 61.7
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 1.2e-71 273.9 235 66.8
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 1.2e-71 273.9 227 61.2
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.0e-71 273.1 225 68.0
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.0e-71 273.1 225 67.1
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 2.0e-71 273.1 245 59.6
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 2.6e-71 272.7 220 65.5
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 2.6e-71 272.7 225 69.8
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 3.4e-71 272.3 226 66.8
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 3.4e-71 272.3 224 62.9
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 3.4e-71 272.3 229 60.3
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 4.4e-71 271.9 225 60.9
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 4.4e-71 271.9 241 68.5
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 5.7e-71 271.6 160 79.4
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 7.5e-71 271.2 226 65.9
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 2.2e-70 269.6 225 61.3
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 2.8e-70 269.2 225 61.3
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 2.8e-70 269.2 226 66.4
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 3.7e-70 268.9 225 61.3
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 3.7e-70 268.9 232 66.4
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 3.7e-70 268.9 220 61.4
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 4.8e-70 268.5 225 60.4
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 4.8e-70 268.5 239 69.5
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 1.1e-69 267.3 225 63.1
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 1.1e-69 267.3 225 63.1
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 1.8e-69 266.5 223 61.9
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 4.1e-69 265.4 225 59.6
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 5.4e-69 265.0 256 54.7
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 7.0e-69 264.6 233 59.2
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 7.0e-69 264.6 248 65.7
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 9.1e-69 264.2 235 63.4
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 9.1e-69 264.2 233 68.7
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 9.1e-69 264.2 228 59.2
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.2e-68 263.8 158 78.5
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.2e-68 263.8 227 67.4
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 3.5e-68 262.3 231 58.0
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 5.9e-68 261.5 224 68.3
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 7.7e-68 261.2 226 61.1
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 1.0e-67 260.8 234 63.2
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 1.0e-67 260.8 225 67.6
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.0e-67 260.8 226 61.1
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 5.0e-67 258.5 222 66.2
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 6.6e-67 258.1 246 57.3
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 8.6e-67 257.7 229 59.0
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 4.2e-66 255.4 224 59.8
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 2.8e-65 252.7 221 57.9
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 1.0e-64 250.8 230 64.8
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.0e-64 250.8 215 64.2
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 8.9e-64 247.7 222 64.4
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 2.6e-63 246.1 222 57.7
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 7.5e-63 244.6 173 67.1
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 2.2e-62 243.0 201 73.6
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 2.2e-62 243.0 202 61.9
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 2.2e-62 243.0 229 62.0
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 4.9e-62 241.9 228 64.9
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 4.9e-62 241.9 225 62.2
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 3.1e-61 239.2 277 50.2
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 4.1e-61 238.8 226 60.2
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.7e-60 236.1 227 55.9
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 4.5e-60 235.3 227 55.5
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.5e-60 235.3 227 55.5
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.5e-60 235.3 227 55.5
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 5.9e-60 235.0 239 53.6
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 7.8e-60 234.6 140 78.6
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.7e-59 233.4 249 57.0
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 1.7e-59 233.4 229 52.8
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 2.9e-59 232.6 235 54.5
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 5.0e-59 231.9 223 53.4
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.5e-58 230.3 227 55.1
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 2.5e-58 229.6 219 58.4
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 8.9e-56 221.1 142 73.9
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 2.6e-55 219.5 137 78.1
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.9e-54 215.3 284 46.8
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 1.2e-52 210.7 134 73.1
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 2.0e-52 209.9 130 78.5
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.0e-51 207.6 139 70.5
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.5e-50 203.8 138 69.6
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.9e-50 203.4 180 58.9
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 4.3e-50 202.2 130 73.8
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 5.6e-50 201.8 239 47.7
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 1.6e-44 183.7 122 71.3
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 2.3e-43 179.9 127 68.5
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 3.6e-41 172.6 138 60.1
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 1.8e-40 170.2 146 55.5
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 9.5e-34 147.9 89 76.4
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 1.8e-32 143.7 131 60.3
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 3.4e-31 139.4 88 75.0
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 3.8e-30 136.0 95 72.6
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.4e-30 134.8 233 41.2
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 9.6e-26 121.3 112 56.2
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 1.3e-22 110.9 153 39.2
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 3.3e-18 96.3 155 36.1
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 5.6e-18 95.5 135 38.5
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 7.3e-18 95.1 123 35.8
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 9.6e-18 94.7 79 55.7
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 5.3e-16 89.0 104 64.4
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 7.6e-15 85.1 124 34.7
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 3.8e-14 82.8 117 36.8
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 8.4e-14 81.6 77 53.2
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 7.9e-12 75.1 77 53.2
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 9.0e-08 61.6 100 58.0
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 2.0e-07 60.5 56 50.0
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 4.5e-07 59.3 89 56.2
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 1.3e-06 57.8 89 51.7
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.3e-06 57.8 97 50.5


User provided reference genes

Program Settings