Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G155400 Manihot esculenta HOM05D006972 ORTHO05D008519 1.6e-103 379.4 193 100.0
Potri.005G101501 Populus trichocarpa HOM05D006972 ORTHO05D008519 1.2e-90 336.7 186 88.2
TAR628G0904 Trochodendron aralioides HOM05D006972 ORTHO05D008519 1.8e-89 332.8 191 82.7
Prupe.7G182900 Prunus persica HOM05D006972 ORTHO05D008519 6.7e-89 330.9 191 84.8
RcHm_v2.0_Chr2g0097181 Rosa chinensis HOM05D006972 ORTHO05D008519 1.1e-86 323.6 191 82.2
TWI73G0968 Tripterygium wilfordii HOM05D006972 ORTHO05D008519 1.1e-86 323.6 190 83.2
Atru.chr3.134 Acer truncatum HOM05D006972 ORTHO05D008519 2.4e-86 322.4 191 83.2
GSVIVG01026641001 Vitis vinifera HOM05D006972 ORTHO05D008519 4.0e-86 321.6 191 83.2
Rhsim10G0195900 Rhododendron simsii HOM05D006972 ORTHO05D008519 1.2e-85 320.1 190 81.6
QL06p052953 Quercus lobata HOM05D006972 ORTHO05D008519 1.5e-85 319.7 213 75.1
CiPaw.08G181600 Carya illinoinensis HOM05D006972 ORTHO05D008519 4.5e-85 318.2 191 80.6
Actinidia17360 Actinidia chinensis HOM05D006972 ORTHO05D008519 7.6e-85 317.4 191 81.2
Eucgr.I02225 Eucalyptus grandis HOM05D006972 ORTHO05D008519 7.6e-85 317.4 191 82.2
Cfa007077 Carpinus fangiana HOM05D006972 ORTHO05D008519 1.0e-84 317.0 191 78.5
MELO3C013724.2 Cucumis melo HOM05D006972 ORTHO05D008519 2.9e-84 315.5 191 79.1
CSS0043244 Camellia sinensis var. sinensis HOM05D006972 ORTHO05D008519 4.9e-84 314.7 191 78.5
Sed0027466 Sechium edule HOM05D006972 ORTHO05D008519 8.4e-84 313.9 191 79.6
Cc07_g11850 Coffea canephora HOM05D006972 ORTHO05D008519 1.4e-83 313.2 192 80.7
Haze_03655 Corylus avellana HOM05D006972 ORTHO05D008519 1.4e-83 313.2 189 78.8
Glyma.01G158800 Glycine max HOM05D006972 ORTHO05D008519 1.4e-83 313.2 191 83.2
vmacro20633 Vaccinium macrocarpon HOM05D006972 ORTHO05D008519 1.9e-83 312.8 190 78.4
Cpa.g.sc365.5 Carica papaya HOM05D006972 ORTHO05D008519 2.5e-83 312.4 190 79.5
ClCG10G000270 Citrullus lanatus HOM05D006972 ORTHO05D008519 2.5e-83 312.4 185 81.1
Oeu012451.1 Olea europaea HOM05D006972 ORTHO05D008519 2.5e-83 312.4 190 77.4
CANSAT25G3183 Cannabis sativa HOM05D006972 ORTHO05D008519 5.5e-83 311.2 192 79.2
Nitab4.5_0005297g0020 Nicotiana tabacum HOM05D006972 ORTHO05D008519 5.5e-83 311.2 191 79.6
Nitab4.5_0000495g0120 Nicotiana tabacum HOM05D006972 ORTHO05D008519 7.1e-83 310.8 191 78.0
CsaV3_3G000300 Cucumis sativus L. HOM05D006972 ORTHO05D008519 1.8e-81 306.2 191 77.0
Nn5g30989 Nelumbo nucifera HOM05D006972 ORTHO05D008519 1.8e-81 306.2 233 66.5
Ciclev10026547m.g Citrus clementina HOM05D006972 ORTHO05D008519 3.0e-81 305.4 190 76.8
FAN19G2622 Fragaria x ananassa HOM05D006972 ORTHO05D008519 3.0e-81 305.4 186 79.6
TPR.G33865 Trifolium pratense HOM05D006972 ORTHO05D008519 3.0e-81 305.4 191 79.6
MSTRG.3630 Avicennia marina HOM05D006972 ORTHO05D008519 8.7e-81 303.9 190 77.4
Lalb_Chr16g0380011 Lupinus albus HOM05D006972 ORTHO05D008519 7.4e-80 300.8 191 77.5
Aqoxy5G01011 Aquilegia oxysepala HOM05D006972 ORTHO05D008519 1.6e-79 299.7 191 77.5
MBI05_g14344_MAGBIO Magnolia biondii HOM05D006972 ORTHO05D008519 1.6e-79 299.7 187 78.6
Ca_24981_v3 Cicer arietinum L. HOM05D006972 ORTHO05D008519 2.2e-79 299.3 191 78.0
Psat2g148200 Pisum sativum HOM05D006972 ORTHO05D008519 2.8e-79 298.9 191 78.5
Duzib147G0479 Durio zibethinus HOM05D006972 ORTHO05D008519 3.7e-79 298.5 191 72.8
Solyc03g032120.3 Solanum lycopersicum HOM05D006972 ORTHO05D008519 4.8e-79 298.1 191 74.9
SalBow5G0785 Salvia bowleyana HOM05D006972 ORTHO05D008519 8.2e-79 297.4 190 74.7
Migut.L00961 Erythranthe guttata HOM05D006972 ORTHO05D008519 4.1e-78 295.0 191 74.9
Lsat_1_v5_gn_2_73640 Lactuca sativa HOM05D006972 ORTHO05D008519 1.5e-77 293.1 189 75.7
Thecc.01G005600 Theobroma cacao HOM05D006972 ORTHO05D008519 1.5e-77 293.1 191 72.3
Hund19696 Selenicereus undatus HOM05D006972 ORTHO05D008519 3.4e-77 292.0 190 71.6
AUR62021571 Chenopodium quinoa HOM05D006972 ORTHO05D008519 1.7e-76 289.7 191 70.2
Gohir.A07G171100 Gossypium hirsutum HOM05D006972 ORTHO05D008519 3.8e-76 288.5 191 69.6
Gohir.D07G177900 Gossypium hirsutum HOM05D006972 ORTHO05D008519 5.0e-76 288.1 191 70.2
Gorai.001G199000 Gossypium raimondii HOM05D006972 ORTHO05D008519 5.0e-76 288.1 191 70.2
Phvul.002G116601 Phaseolus vulgaris HOM05D006972 ORTHO05D008519 6.5e-76 287.7 191 77.0
Zm00001eb002450 Zea mays HOM05D006972 ORTHO05D008519 6.5e-76 287.7 190 71.1
AUR62008520 Chenopodium quinoa HOM05D006972 ORTHO05D008519 1.4e-75 286.6 191 69.1
HanXRQChr14g0442531 Helianthus annuus HOM05D006972 ORTHO05D008519 1.4e-75 286.6 189 74.6
PSO541G2195 Papaver somniferum HOM05D006972 ORTHO05D008519 2.5e-75 285.8 192 74.5
EL10Ac5g11121 Beta vulgaris HOM05D006972 ORTHO05D008519 3.2e-75 285.4 191 68.1
Lj2g0018473 Lotus japonicus HOM05D006972 ORTHO05D008519 3.2e-75 285.4 177 80.2
ECA238G2655 Erigeron canadensis HOM05D006972 ORTHO05D008519 4.2e-75 285.0 185 76.2
THA.LOC104826441 Tarenaya hassleriana HOM05D006972 ORTHO05D008519 9.4e-75 283.9 191 71.2
CAN.G354.14 Capsicum annuum HOM05D006972 ORTHO05D008519 2.1e-74 282.7 177 76.3
VMungo1215G1992 Vigna mungo HOM05D006972 ORTHO05D008519 2.1e-74 282.7 191 74.9
AL8G45620 Arabidopsis lyrata HOM05D006972 ORTHO05D008519 2.7e-74 282.3 182 73.1
Ah.02g113990 Amaranthus hybridus HOM05D006972 ORTHO05D008519 2.3e-73 279.3 189 66.7
ATR0807G046 Amborella trichopoda HOM05D006972 ORTHO05D008519 2.0e-72 276.2 189 69.3
arahy.Tifrunner.gnm1.ann1.B19VPR Arachis hypogaea HOM05D006972 ORTHO05D008519 2.5e-72 275.8 163 82.8
arahy.Tifrunner.gnm1.ann1.K20VQB Arachis hypogaea HOM05D006972 ORTHO05D008519 2.5e-72 275.8 163 82.8
FAN23G2574 Fragaria x ananassa HOM05D006972 ORTHO05D008519 1.1e-70 270.4 228 63.2
PSO675G3277 Papaver somniferum HOM05D006972 ORTHO05D008519 1.1e-70 270.4 167 76.6
AT5G66005 Arabidopsis thaliana HOM05D006972 ORTHO05D008519 1.8e-70 269.6 182 70.9
CDE04G1133 Ceratophyllum demersum HOM05D006972 ORTHO05D008519 1.8e-70 269.6 176 72.7
Haze_03661 Corylus avellana HOM05D006972 ORTHO05D008519 4.5e-69 265.0 154 81.2
HPP92_026034 Vanilla planifolia HOM05D006972 ORTHO05D008519 8.5e-68 260.8 188 66.0
FvH4_1g10330 Fragaria vesca HOM05D006972 ORTHO05D008519 2.1e-66 256.1 153 80.4
Medtr5g024200 Medicago truncatula HOM05D006972 ORTHO05D008519 3.6e-66 255.4 160 79.4
COL.COLO4_24144 Corchorus olitorius HOM05D006972 ORTHO05D008519 1.4e-65 253.4 169 71.0
Sc03g0003950 Simmondsia chinensis HOM05D006972 ORTHO05D008519 1.8e-65 253.1 154 76.0
SGA_v2.0_scaffold132G34519 Striga asiatica HOM05D006972 ORTHO05D008519 2.2e-63 246.1 170 70.6
Carub.0008s2851 Capsella rubella HOM05D006972 ORTHO05D008519 3.7e-63 245.4 198 63.6
RcHm_v2.0_Chr2g0090391 Rosa chinensis HOM05D006972 ORTHO05D008519 1.2e-58 230.3 138 81.2
RcHm_v2.0_Chr1g0346531 Rosa chinensis HOM05D006972 ORTHO05D008519 2.1e-58 229.6 138 80.4
unitig_747.g21812 Utricularia gibba HOM05D006972 ORTHO05D008519 1.1e-51 207.2 199 57.3
Peaxi162Scf00122g02416 Petunia axillaris HOM05D006972 ORTHO05D008519 1.0e-49 200.7 120 78.3
MD15G1231300 Malus domestica HOM05D006972 ORTHO05D008519 4.0e-49 198.7 123 77.2
FAN26G0227 Fragaria x ananassa HOM05D006972 ORTHO05D008519 1.5e-48 196.8 153 68.0
Os03g0130750 Oryza sativa ssp. japonica HOM05D006972 ORTHO05D008519 9.1e-46 187.6 129 69.0
FAN28G2862 Fragaria x ananassa HOM05D006972 ORTHO05D008519 1.0e-44 184.1 109 80.7
Mapoly0114s0024 Marchantia polymorpha HOM05D006972 ORTHO05D008519 1.9e-43 179.9 212 50.9
Sopen03g005970 Solanum pennellii HOM05D006972 ORTHO05D008519 1.4e-38 163.7 103 75.7
CANSAT35G0485 Cannabis sativa HOM05D006972 ORTHO05D008519 1.2e-34 150.6 92 80.4
Lsat_1_v5_gn_5_10160 Lactuca sativa HOM05D006972 ORTHO05D008519 2.1e-34 149.8 133 61.7
SMO352G0055 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 4.4e-32 142.1 135 55.6
RcHm_v2.0_Chr5g0047551 Rosa chinensis HOM05D006972 ORTHO05D008519 1.1e-30 137.5 79 82.3
Cre16.g682050 Chlamydomonas reinhardtii HOM05D006972 ORTHO05D008519 2.7e-29 132.9 193 43.0
Glyma.11G085800 Glycine max HOM05D006972 ORTHO05D008519 1.3e-28 130.6 138 56.5
MD15G1231400 Malus domestica HOM05D006972 ORTHO05D008519 1.9e-27 126.7 73 82.2
Actinidia22899 Actinidia chinensis HOM05D006972 ORTHO05D008519 7.3e-27 124.8 74 81.1
RcHm_v2.0_Chr5g0015201 Rosa chinensis HOM05D006972 ORTHO05D008519 7.3e-27 124.8 70 84.3
MCO16G109 Micromonas commoda HOM05D006972 ORTHO05D008519 1.5e-24 117.1 194 38.1
Pp3c7_7150 Physcomitrium patens HOM05D006972 ORTHO05D008519 3.7e-23 112.5 183 37.7
Mapoly0023s0154 Marchantia polymorpha HOM05D006972 ORTHO05D008519 3.2e-22 109.4 177 37.3
Pp3c11_19180 Physcomitrium patens HOM05D006972 ORTHO05D008519 2.0e-21 106.7 177 36.2
SMO147G0393 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 1.3e-20 104.0 135 37.8
Lsat_1_v5_gn_1_125281 Lactuca sativa HOM05D006972 ORTHO05D008519 9.5e-19 97.8 60 78.3
arahy.Tifrunner.gnm1.ann1.9GY3HT Arachis hypogaea HOM05D006972 ORTHO05D008519 3.6e-18 95.9 78 62.8
CBR_g19759 Chara braunii HOM05D006972 ORTHO05D008519 1.8e-17 93.6 135 45.9
Lsat_1_v5_gn_8_30121 Lactuca sativa HOM05D006972 ORTHO05D008519 3.1e-17 92.8 60 76.7
arahy.Tifrunner.gnm1.ann1.J6JT3S Arachis hypogaea HOM05D006972 ORTHO05D008519 2.6e-16 89.7 79 60.8
PRCOL_00004399 Prasinoderma coloniale HOM05D006972 ORTHO05D008519 7.5e-16 88.2 165 37.0
MD02G1111700 Malus domestica HOM05D006972 ORTHO05D008519 3.2e-14 82.8 172 34.3
arahy.Tifrunner.gnm1.ann1.A1T4XS Arachis hypogaea HOM05D006972 ORTHO05D008519 5.6e-11 72.0 59 59.3
arahy.Tifrunner.gnm1.ann1.BGC890 Arachis hypogaea HOM05D006972 ORTHO05D008519 8.1e-10 68.2 61 55.7
RcHm_v2.0_Chr5g0015211 Rosa chinensis HOM05D006972 ORTHO05D008519 2.9e-07 59.7 33 78.8


User provided reference genes

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