Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G153300 Manihot esculenta HOM05D007700 ORTHO05D009669 1.5e-134 483.8 266 100.0
Thecc.01G008500 Theobroma cacao HOM05D007700 ORTHO05D009669 1.3e-74 284.6 265 58.1
Potri.005G103300 Populus trichocarpa HOM05D007700 ORTHO05D009669 2.5e-73 280.4 267 58.1
CiPaw.07G004600 Carya illinoinensis HOM05D007700 ORTHO05D009669 3.3e-73 280.0 268 63.8
Sabra05G0085500 Salix brachista HOM05D007700 ORTHO05D009669 4.7e-72 276.2 267 56.9
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 6.2e-72 275.8 270 64.1
Cfa007052 Carpinus fangiana HOM05D007700 ORTHO05D009669 1.4e-71 274.6 274 63.1
Gorai.003G004000 Gossypium raimondii HOM05D007700 ORTHO05D009669 1.2e-70 271.6 266 60.5
CANSAT25G3310 Cannabis sativa HOM05D007700 ORTHO05D009669 9.9e-70 268.5 266 56.4
Gohir.D03G003800 Gossypium hirsutum HOM05D007700 ORTHO05D009669 2.2e-69 267.3 264 59.1
Psat4g208920 Pisum sativum HOM05D007700 ORTHO05D009669 2.9e-69 266.9 268 60.1
Dinv40165 Davidia involucrata HOM05D007700 ORTHO05D009669 2.4e-68 263.8 274 59.5
QL06p052538 Quercus lobata HOM05D007700 ORTHO05D009669 4.2e-68 263.1 271 55.7
Eucgr.I02272 Eucalyptus grandis HOM05D007700 ORTHO05D009669 5.4e-68 262.7 275 53.8
THA.LOC104804288 Tarenaya hassleriana HOM05D007700 ORTHO05D009669 1.6e-67 261.2 267 58.8
TPR.G28737 Trifolium pratense HOM05D007700 ORTHO05D009669 1.6e-67 261.2 266 60.2
Atru.chr3.942 Acer truncatum HOM05D007700 ORTHO05D009669 3.5e-67 260.0 270 53.7
Nn6g31772 Nelumbo nucifera HOM05D007700 ORTHO05D009669 5.6e-65 252.7 280 51.4
Ca_23118_v3 Cicer arietinum L. HOM05D007700 ORTHO05D009669 7.3e-65 252.3 269 57.6
arahy.Tifrunner.gnm1.ann1.PXC5PH Arachis hypogaea HOM05D007700 ORTHO05D009669 9.6e-65 251.9 275 53.5
ClCG01G020760 Citrullus lanatus HOM05D007700 ORTHO05D009669 1.3e-64 251.5 270 55.9
TAR625G0909 Trochodendron aralioides HOM05D007700 ORTHO05D009669 4.8e-64 249.6 273 56.8
Thhalv10022683m.g Eutrema salsugineum HOM05D007700 ORTHO05D009669 1.1e-63 248.4 271 50.9
AL3G50640 Arabidopsis lyrata HOM05D007700 ORTHO05D009669 3.1e-63 246.9 266 51.5
arahy.Tifrunner.gnm1.ann1.HE2L98 Arachis hypogaea HOM05D007700 ORTHO05D009669 5.8e-62 242.7 275 52.0
Lj3g0022870 Lotus japonicus HOM05D007700 ORTHO05D009669 5.8e-62 242.7 266 50.8
Medtr8g005870 Medicago truncatula HOM05D007700 ORTHO05D009669 7.6e-62 242.3 269 55.8
CsaV3_6G047710 Cucumis sativus L. HOM05D007700 ORTHO05D009669 1.3e-61 241.5 271 58.3
Aa31LG8G14930 Aethionema arabicum HOM05D007700 ORTHO05D009669 8.4e-61 238.8 266 49.6
AT2G17670 Arabidopsis thaliana HOM05D007700 ORTHO05D009669 1.1e-60 238.4 271 49.4
Sp3g31020 Schrenkiella parvula HOM05D007700 ORTHO05D009669 1.1e-60 238.4 269 50.9
PGR119G0746 Punica granatum HOM05D007700 ORTHO05D009669 1.9e-60 237.7 267 56.9
Actinidia22918 Actinidia chinensis HOM05D007700 ORTHO05D009669 6.0e-59 232.6 269 50.6
MELO3C007960.2 Cucumis melo HOM05D007700 ORTHO05D009669 6.0e-59 232.6 266 53.8
Solyc02g082970.1 Solanum lycopersicum HOM05D007700 ORTHO05D009669 2.3e-58 230.7 268 54.9
Sopen02g027760 Solanum pennellii HOM05D007700 ORTHO05D009669 5.1e-58 229.6 267 50.6
PGSC0003DMG400040241 Solanum tuberosum HOM05D007700 ORTHO05D009669 2.5e-57 227.3 271 49.4
C09p13500 Brassica napus HOM05D007700 ORTHO05D009669 1.6e-56 224.6 266 48.1
BolC9t54240H Brassica oleracea HOM05D007700 ORTHO05D009669 2.8e-56 223.8 266 47.7
Sed0015131 Sechium edule HOM05D000242 ORTHO05D009669 1.4e-55 221.5 251 50.6
Lj2P490T20 Lonicera japonica HOM05D007700 ORTHO05D009669 3.1e-55 220.3 269 49.8
Carub.0003s3177 Capsella rubella HOM05D007700 ORTHO05D009669 9.0e-55 218.8 235 49.4
BraA09t36788Z Brassica rapa HOM05D007700 ORTHO05D009669 4.5e-54 216.5 266 47.0
Cc00_g14260 Coffea canephora HOM05D007700 ORTHO05D009669 1.3e-53 214.9 268 47.0
A09p11480 Brassica napus HOM05D007700 ORTHO05D009669 2.2e-53 214.2 266 46.6
BcaB07g31715 Brassica carinata HOM05D007700 ORTHO05D009669 2.9e-53 213.8 271 45.8
CARHR107900 Cardamine hirsuta HOM05D007700 ORTHO05D009669 4.9e-53 213.0 227 52.4
VMungo0331G0753 Vigna mungo HOM05D007700 ORTHO05D009669 6.4e-53 212.6 271 47.6
Glyma.07G109000 Glycine max HOM05D007700 ORTHO05D009669 1.4e-52 211.5 273 48.0
Ciclev10025555m.g Citrus clementina HOM05D007700 ORTHO05D009669 4.2e-52 209.9 269 47.2
Rhsim10G0201800 Rhododendron simsii HOM05D000242 ORTHO05D009669 3.0e-50 203.8 202 52.0
Rhsim10G0203000 Rhododendron simsii HOM05D000242 ORTHO05D009669 6.7e-50 202.6 202 52.0
vmacro20514 Vaccinium macrocarpon HOM05D007700 ORTHO05D009669 6.7e-50 202.6 270 44.8
Prupe.7G178400 Prunus persica HOM05D007700 ORTHO05D009669 7.4e-49 199.1 268 45.5
COL.COLO4_22522 Corchorus olitorius HOM05D007700 ORTHO05D009669 2.1e-48 197.6 244 47.5
MBI05_g43154_MAGBIO Magnolia biondii HOM05D007700 ORTHO05D009669 2.1e-48 197.6 266 44.0
Gohir.A02G176100 Gossypium hirsutum HOM05D007700 ORTHO05D009669 1.2e-46 191.8 148 72.3
TWI73G0108 Tripterygium wilfordii HOM05D007700 ORTHO05D009669 2.2e-45 187.6 200 53.5
DCAR_023138 Daucus carota HOM05D007700 ORTHO05D009669 2.1e-43 181.0 176 56.8
HanXRQChr07g0192051 Helianthus annuus HOM05D007700 ORTHO05D009669 2.1e-43 181.0 273 43.2
Migut.C00922 Erythranthe guttata HOM05D007700 ORTHO05D009669 7.9e-43 179.1 171 56.7
Lsat_1_v5_gn_2_74520 Lactuca sativa HOM05D007700 ORTHO05D009669 3.9e-42 176.8 278 45.7
Peaxi162Scf01310g10029 Petunia axillaris HOM05D007700 ORTHO05D009669 3.9e-42 176.8 266 47.4
Dinv08534 Davidia involucrata HOM05D007700 ORTHO05D009669 6.7e-42 176.0 152 59.2
SalBow7G3569 Salvia bowleyana HOM05D007700 ORTHO05D009669 1.5e-41 174.9 232 46.1
CAN.G890.59 Capsicum annuum HOM05D007700 ORTHO05D009669 4.3e-41 173.3 151 67.5
CDE05G1147 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 4.3e-41 173.3 233 42.5
Nitab4.5_0003207g0040 Nicotiana tabacum HOM05D007700 ORTHO05D009669 5.7e-41 172.9 151 67.5
FvH4_1g10671 Fragaria vesca HOM05D007700 ORTHO05D009669 7.4e-41 172.6 194 50.5
Nitab4.5_0001581g0090 Nicotiana tabacum HOM05D007700 ORTHO05D009669 9.6e-41 172.2 151 66.9
SGA_v2.0_scaffold275G46573 Striga asiatica HOM05D007700 ORTHO05D009669 1.6e-40 171.4 243 46.1
Lalb_Chr03g0039951 Lupinus albus HOM05D007700 ORTHO05D009669 8.2e-40 169.1 198 52.0
FAN23G0395 Fragaria x ananassa HOM05D007700 ORTHO05D009669 1.1e-39 168.7 194 49.5
MD02G1120600 Malus domestica HOM05D007700 ORTHO05D009669 2.4e-39 167.5 270 38.9
EL10Ac6g13369 Beta vulgaris HOM05D007700 ORTHO05D009669 5.0e-37 159.8 210 45.2
Phvul.010G056500 Phaseolus vulgaris HOM05D007700 ORTHO05D009669 1.1e-36 158.7 281 38.8
HPP92_025432 Vanilla planifolia HOM05D007700 ORTHO05D009669 2.5e-36 157.5 278 38.1
AUR62041102 Chenopodium quinoa HOM05D007700 ORTHO05D009669 7.9e-35 152.5 197 46.2
AUR62026170 Chenopodium quinoa HOM05D007700 ORTHO05D009669 9.7e-33 145.6 197 45.2
Aqoxy6G01792 Aquilegia oxysepala HOM05D007700 ORTHO05D009669 2.2e-32 144.4 213 42.3
SHI08474 Sapria himalayana HOM05D007700 ORTHO05D009669 5.3e-31 139.8 105 62.9
MSTRG.1126 Avicennia marina HOM05D007700 ORTHO05D009669 2.6e-30 137.5 233 39.9
Sc03g0003890 Simmondsia chinensis HOM05D007700 ORTHO05D009669 5.9e-30 136.3 193 42.5
Ah.03g134060 Amaranthus hybridus HOM05D007700 ORTHO05D009669 1.7e-29 134.8 199 40.2
Actinidia17391 Actinidia chinensis HOM05D000192 ORTHO05D000123 1.1e-23 115.5 112 56.2
BcaC04g22956 Brassica carinata HOM05D007700 ORTHO05D009669 1.7e-21 108.2 112 50.9
Glyma.03G117900 Glycine max HOM05D007700 ORTHO05D009669 9.7e-17 92.4 266 32.7
ATR0739G057 Amborella trichopoda HOM05D007700 ORTHO05D009669 2.8e-16 90.9 240 29.6
ATR0661G421 Amborella trichopoda HOM05D007700 ORTHO05D009669 2.4e-15 87.8 123 42.3
CDE05G1645 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 6.7e-10 69.7 73 46.6


User provided reference genes

Program Settings