Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 1.1e-196 689.9 368 100.0
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 6.4e-133 478.0 350 70.0
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 5.1e-130 468.4 351 69.2
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 2.5e-124 449.5 350 68.3
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 2.1e-123 446.4 351 67.0
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 2.3e-122 443.0 356 69.9
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 9.7e-121 437.6 352 65.6
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 4.8e-120 435.3 352 67.0
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 3.4e-118 429.1 280 76.1
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 7.6e-118 427.9 351 65.5
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.2e-117 426.4 360 63.3
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 6.5e-117 424.9 360 62.8
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 6.5e-117 424.9 360 62.8
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 6.5e-117 424.9 357 63.6
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 6.5e-117 424.9 348 65.2
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 3.2e-116 422.5 307 70.7
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 5.5e-116 421.8 354 63.6
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 1.6e-115 420.2 349 66.2
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 2.1e-115 419.9 305 71.1
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 3.9e-114 415.6 370 63.2
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 6.7e-114 414.8 367 65.7
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 3.3e-113 412.5 305 67.2
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 9.7e-113 411.0 289 72.7
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 1.8e-111 406.8 357 65.5
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 6.9e-111 404.8 360 62.2
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 6.9e-111 404.8 347 64.0
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 5.9e-110 401.7 347 63.7
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 1.7e-109 400.2 309 68.6
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 4.2e-108 395.6 361 59.6
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 7.2e-108 394.8 278 71.6
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 9.4e-108 394.4 348 59.5
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 3.6e-107 392.5 351 61.0
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 4.7e-107 392.1 283 70.0
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 6.1e-107 391.7 347 59.1
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 1.0e-106 391.0 354 60.7
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 1.8e-106 390.2 351 59.3
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 2.3e-106 389.8 348 60.1
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 3.0e-106 389.4 351 58.4
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 3.9e-106 389.0 351 57.8
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 6.7e-106 388.3 348 59.8
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.5e-105 387.1 352 60.8
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 2.0e-105 386.7 347 58.2
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 2.0e-105 386.7 347 58.2
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 3.3e-105 386.0 350 59.4
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 3.3e-105 386.0 271 71.6
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 5.7e-105 385.2 352 57.4
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 9.7e-105 384.4 277 66.8
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 2.2e-104 383.3 351 57.5
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 2.2e-104 383.3 366 55.5
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 2.8e-104 382.9 351 59.8
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 4.8e-104 382.1 275 66.5
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 4.8e-104 382.1 273 70.0
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 6.3e-104 381.7 351 59.8
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 8.2e-104 381.3 349 58.7
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 1.1e-103 380.9 270 69.3
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 3.1e-103 379.4 384 55.5
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 9.1e-103 377.9 270 69.3
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 2.6e-102 376.3 348 60.3
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 5.9e-102 375.2 351 56.4
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 5.9e-102 375.2 351 56.4
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 1.0e-101 374.4 277 66.4
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 1.0e-101 374.4 277 66.4
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 1.0e-101 374.4 352 58.5
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 1.0e-101 374.4 271 67.9
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 1.0e-101 374.4 352 61.6
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 1.7e-101 373.6 354 57.1
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 2.2e-101 373.2 277 67.5
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 5.0e-101 372.1 259 69.1
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 8.5e-101 371.3 351 55.8
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 1.4e-100 370.5 276 66.7
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 1.4e-100 370.5 353 55.2
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 1.2e-99 367.5 360 54.4
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 1.6e-99 367.1 283 64.0
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 3.9e-98 362.5 369 58.3
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 8.8e-98 361.3 347 54.5
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.1e-97 360.9 351 54.4
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 2.0e-97 360.1 359 56.0
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 1.3e-96 357.5 355 58.0
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 2.0e-94 350.1 305 59.7
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 3.5e-94 349.4 276 63.4
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 4.5e-94 349.0 274 62.0
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 1.1e-92 344.4 257 65.0
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 7.2e-92 341.7 267 61.8
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 3.6e-91 339.3 361 51.8
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 2.6e-89 333.2 310 55.5
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 2.6e-89 333.2 332 53.3
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 4.8e-88 328.9 308 62.3
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 2.9e-85 319.7 286 55.9
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 1.6e-83 313.9 351 48.7
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 2.2e-80 303.5 275 55.6
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 2.8e-80 303.1 359 52.9
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 5.0e-77 292.4 271 55.7
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 3.3e-76 289.7 271 55.4
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 4.2e-76 289.3 212 67.9
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 2.9e-69 266.5 275 50.5
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 4.7e-67 259.2 213 62.4
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 4.0e-66 256.1 292 46.9
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 8.9e-66 255.0 273 51.6
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 1.5e-65 254.2 270 49.6
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 1.7e-64 250.8 269 48.7
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 4.6e-62 242.7 289 52.6
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 5.0e-61 239.2 252 56.7
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 5.0e-61 239.2 211 59.2
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 9.5e-60 235.0 211 58.8
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 1.6e-59 234.2 212 55.7
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 2.8e-59 233.4 254 53.5
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 5.2e-58 229.2 249 55.4
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 3.2e-55 219.9 254 50.8
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 1.7e-53 214.2 173 65.3
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 9.5e-52 208.4 250 47.6
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 1.1e-50 204.9 348 39.7
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 7.8e-46 188.7 265 41.1
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 8.4e-40 168.7 267 39.7
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 1.1e-39 168.3 284 38.4
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.2e-38 164.9 166 51.2
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 6.6e-37 159.1 150 56.7
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 9.6e-36 155.2 96 67.7
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 4.0e-34 149.8 134 63.4
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 2.2e-32 144.1 87 72.4
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 6.4e-32 142.5 184 46.2
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 7.1e-31 139.0 121 52.9
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 4.6e-30 136.3 107 62.6
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 9.3e-23 112.1 179 36.3
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 3.3e-20 103.6 108 49.1
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 2.1e-19 100.9 53 79.2
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 1.1e-18 98.6 93 71.0
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.5e-15 87.4 54 66.7
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 7.1e-15 85.9 131 33.6
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 7.1e-15 85.9 99 48.5
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.6e-14 84.7 47 76.6
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 3.0e-13 80.5 47 66.0
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 3.3e-12 77.0 47 70.2
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 3.3e-12 77.0 48 66.7
Lj2A1074G31 Lonicera japonica HOM05D005912 ORTHO05D007329 9.6e-12 75.5 57 63.2
SEGI_06824 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 2.6e-09 67.4 50 58.0


User provided reference genes

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