Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G148500 Manihot esculenta HOM05D006562 ORTHO05D008230 0.0e+00 1232.6 619 100.0
Potri.005G111000 Populus trichocarpa HOM05D006562 ORTHO05D008230 8.1e-237 823.9 619 68.5
QL06p051072 Quercus lobata HOM05D006562 ORTHO05D008230 5.8e-227 791.2 629 67.4
Sabra05G0091000 Salix brachista HOM05D006562 ORTHO05D008230 5.8e-227 791.2 635 64.7
Cfa007000 Carpinus fangiana HOM05D006562 ORTHO05D008230 2.9e-226 788.9 620 65.8
Haze_03732 Corylus avellana HOM05D006562 ORTHO05D008230 1.2e-224 783.5 656 62.5
Atru.chr3.853 Acer truncatum HOM05D006562 ORTHO05D008230 2.3e-223 779.2 655 64.4
Thecc.01G014800 Theobroma cacao HOM05D006562 ORTHO05D008230 5.6e-222 774.6 621 63.9
COL.COLO4_22460 Corchorus olitorius HOM05D006562 ORTHO05D008230 1.2e-221 773.5 624 64.3
CiPaw.07G060900 Carya illinoinensis HOM05D006562 ORTHO05D008230 2.8e-221 772.3 618 63.8
TWI53G1373 Tripterygium wilfordii HOM05D006562 ORTHO05D008230 2.9e-218 762.3 620 64.4
MD15G1242700 Malus domestica HOM05D006562 ORTHO05D008230 6.4e-218 761.1 620 63.7
Gohir.D10G089300 Gossypium hirsutum HOM05D006562 ORTHO05D008230 1.1e-214 750.4 625 63.0
Gohir.A10G098700 Gossypium hirsutum HOM05D006562 ORTHO05D008230 3.3e-214 748.8 625 63.0
Gorai.011G098200 Gossypium raimondii HOM05D006562 ORTHO05D008230 2.1e-213 746.1 625 62.9
Dinv33663 Davidia involucrata HOM05D006562 ORTHO05D008230 1.8e-212 743.0 619 63.0
RcHm_v2.0_Chr2g0099051 Rosa chinensis HOM05D006562 ORTHO05D008230 5.3e-212 741.5 632 62.0
GSVIVG01018736001 Vitis vinifera HOM05D006562 ORTHO05D008230 3.0e-207 725.7 621 61.0
TAR376G1060 Trochodendron aralioides HOM05D006562 ORTHO05D008230 7.4e-206 721.1 631 60.7
Actinidia22955 Actinidia chinensis HOM05D006562 ORTHO05D008230 1.4e-201 706.8 618 58.9
FAN28G2818 Fragaria x ananassa HOM05D006562 ORTHO05D008230 3.2e-201 705.7 626 59.9
vmacro22151 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 9.3e-201 704.1 619 60.1
vmacro22192 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 1.2e-200 703.7 619 59.9
Cpa.g.sc6.285 Carica papaya HOM05D006562 ORTHO05D008230 4.6e-200 701.8 648 59.4
CSS0025685 Camellia sinensis var. sinensis HOM05D006562 ORTHO05D008230 1.3e-199 700.3 620 58.9
FvH4_1g11470 Fragaria vesca HOM05D006562 ORTHO05D008230 3.9e-199 698.7 627 59.3
Duzib187G1447 Durio zibethinus HOM05D006562 ORTHO05D008230 5.6e-198 694.9 627 59.8
Lj2A480G48 Lonicera japonica HOM05D006562 ORTHO05D008230 5.6e-198 694.9 625 60.0
CANSAT25G3480 Cannabis sativa HOM05D006562 ORTHO05D008230 9.6e-198 694.1 626 59.7
FAN23G1005 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.3e-197 693.7 626 58.8
FAN19G2077 Fragaria x ananassa HOM05D006562 ORTHO05D008230 4.0e-196 688.7 643 58.0
Sed0025600 Sechium edule HOM05D006562 ORTHO05D008230 2.5e-190 669.5 601 59.9
Lj4g0007150 Lotus japonicus HOM05D006562 ORTHO05D008230 4.8e-189 665.2 625 57.0
CsaV3_6G047340 Cucumis sativus L. HOM05D006562 ORTHO05D008230 2.2e-186 656.4 626 57.0
TPR.G19508 Trifolium pratense HOM05D006562 ORTHO05D008230 2.9e-186 656.0 618 56.0
Medtr8g075250 Medicago truncatula HOM05D006562 ORTHO05D008230 3.2e-185 652.5 621 55.2
Eucgr.I02333 Eucalyptus grandis HOM05D006562 ORTHO05D008230 1.6e-184 650.2 627 57.3
Psat4g101960 Pisum sativum HOM05D006562 ORTHO05D008230 7.9e-184 647.9 622 55.1
Ca_03628_v3 Cicer arietinum L. HOM05D006562 ORTHO05D008230 1.8e-183 646.7 641 54.6
HanXRQChr15g0483891 Helianthus annuus HOM05D006562 ORTHO05D008230 1.5e-182 643.7 626 55.4
ClCG01G020460 Citrullus lanatus HOM05D006562 ORTHO05D008230 1.9e-182 643.3 621 57.3
Ciclev10025220m.g Citrus clementina HOM05D006562 ORTHO05D008230 1.1e-180 637.5 627 56.0
Prupe.7G171500 Prunus persica HOM05D006562 ORTHO05D008230 1.8e-180 636.7 521 63.9
Sp2g30560 Schrenkiella parvula HOM05D006562 ORTHO05D008230 1.2e-179 634.0 625 55.8
Sc16g0001970 Simmondsia chinensis HOM05D006562 ORTHO05D008230 1.5e-179 633.6 635 54.8
AL8G45460 Arabidopsis lyrata HOM05D006562 ORTHO05D008230 3.4e-179 632.5 615 56.9
Thhalv10003881m.g Eutrema salsugineum HOM05D006562 ORTHO05D008230 5.0e-178 628.6 614 56.4
Glyma.16G124500 Glycine max HOM05D006562 ORTHO05D008230 1.4e-177 627.1 630 54.9
VMungo0251G0646 Vigna mungo HOM05D006562 ORTHO05D008230 1.9e-177 626.7 620 55.0
Carub.0008s2836 Capsella rubella HOM05D006562 ORTHO05D008230 5.5e-177 625.2 620 55.6
Cc07_g11050 Coffea canephora HOM05D006562 ORTHO05D008230 6.1e-176 621.7 624 55.4
AT5G66130 Arabidopsis thaliana HOM05D006562 ORTHO05D008230 7.9e-176 621.3 614 55.0
DCAR_014038 Daucus carota HOM05D006562 ORTHO05D008230 1.0e-175 620.9 532 58.8
arahy.Tifrunner.gnm1.ann1.X2JQ1G Arachis hypogaea HOM05D006562 ORTHO05D008230 1.4e-175 620.5 624 54.3
Phvul.003G265000 Phaseolus vulgaris HOM05D006562 ORTHO05D008230 1.8e-175 620.2 629 54.8
arahy.Tifrunner.gnm1.ann1.6MN492 Arachis hypogaea HOM05D006562 ORTHO05D008230 5.7e-174 615.1 624 54.5
Lalb_Chr16g0391391 Lupinus albus HOM05D006562 ORTHO05D008230 1.3e-173 614.0 621 54.8
MBI05_g23389_MAGBIO Magnolia biondii HOM05D006562 ORTHO05D008230 1.7e-173 613.6 659 52.8
Lsat_1_v5_gn_3_72080 Lactuca sativa HOM05D006562 ORTHO05D008230 1.1e-172 610.9 630 55.6
MELO3C007925.2 Cucumis melo HOM05D006562 ORTHO05D008230 2.6e-171 606.3 668 51.6
AUR62003339 Chenopodium quinoa HOM05D006562 ORTHO05D008230 1.0e-170 604.4 580 55.7
CARHR281620 Cardamine hirsuta HOM05D006562 ORTHO05D008230 2.2e-170 603.2 582 56.0
Oeu048479.1 Olea europaea HOM05D006562 ORTHO05D008230 5.5e-169 598.6 621 53.9
BcaB04g20123 Brassica carinata HOM05D006562 ORTHO05D008230 3.0e-167 592.8 622 53.5
AUR62029498 Chenopodium quinoa HOM05D006562 ORTHO05D008230 2.0e-166 590.1 573 55.1
Nitab4.5_0001892g0110 Nicotiana tabacum HOM05D006562 ORTHO05D008230 3.3e-166 589.3 617 51.9
PGR119G1624 Punica granatum HOM05D006562 ORTHO05D008230 2.8e-165 586.3 626 51.9
Aqoxy5G01815 Aquilegia oxysepala HOM05D006562 ORTHO05D008230 1.2e-163 580.9 589 53.8
BraA09t36658Z Brassica rapa HOM05D006562 ORTHO05D008230 5.5e-161 572.0 629 52.0
BcaC04g23114 Brassica carinata HOM05D006562 ORTHO05D008230 2.7e-160 569.7 584 54.3
EL10Ac6g15524 Beta vulgaris HOM05D006562 ORTHO05D008230 4.7e-160 568.9 686 48.5
SalBow5G1234 Salvia bowleyana HOM05D006562 ORTHO05D008230 6.1e-160 568.5 639 49.1
Aa31LG1G14620 Aethionema arabicum HOM05D006562 ORTHO05D008230 8.8e-159 564.7 522 56.5
Solyc02g083600.4 Solanum lycopersicum HOM05D006562 ORTHO05D008230 1.2e-158 564.3 621 50.4
Nitab4.5_0003187g0030 Nicotiana tabacum HOM05D006562 ORTHO05D008230 2.6e-158 563.1 617 49.8
SGA_v2.0_scaffold229G43296 Striga asiatica HOM05D006562 ORTHO05D008230 1.7e-157 560.5 565 53.1
Migut.L00910 Erythranthe guttata HOM05D006562 ORTHO05D008230 8.2e-157 558.1 628 50.2
BolC9t54092H Brassica oleracea HOM05D006562 ORTHO05D008230 1.2e-155 554.3 583 53.3
C09p12020 Brassica napus HOM05D006562 ORTHO05D008230 7.7e-155 551.6 584 53.6
Sopen02g028380 Solanum pennellii HOM05D006562 ORTHO05D008230 1.0e-154 551.2 583 51.8
A09p10140 Brassica napus HOM05D006562 ORTHO05D008230 6.5e-154 548.5 613 52.0
Rhsim10G0209300 Rhododendron simsii HOM05D006562 ORTHO05D008230 7.2e-153 545.0 634 49.2
Peaxi162Scf00328g00616 Petunia axillaris HOM05D006562 ORTHO05D008230 2.7e-152 543.1 653 48.9
PSO700G0294 Papaver somniferum HOM05D006562 ORTHO05D008230 2.3e-151 540.0 646 48.3
Ah.03g149120 Amaranthus hybridus HOM05D006562 ORTHO05D008230 2.6e-150 536.6 640 47.8
PGSC0003DMG400003647 Solanum tuberosum HOM05D006562 ORTHO05D008230 3.4e-150 536.2 526 54.0
PSO170G3776 Papaver somniferum HOM05D006562 ORTHO05D008230 1.3e-149 534.3 645 48.7
SHI08537 Sapria himalayana HOM05D006562 ORTHO05D008230 1.6e-147 527.3 416 62.5
CAN.G1274.29 Capsicum annuum HOM05D006562 ORTHO05D008230 4.5e-147 525.8 549 51.5
Hund16502 Selenicereus undatus HOM05D006562 ORTHO05D008230 1.2e-139 501.1 432 58.8
MSTRG.15581 Avicennia marina HOM05D006562 ORTHO05D008230 5.9e-139 498.8 504 52.6
ECA246G3730 Erigeron canadensis HOM05D006562 ORTHO05D008230 1.2e-136 491.1 633 48.2
ATR0712G114 Amborella trichopoda HOM05D006562 ORTHO05D008230 4.7e-136 489.2 572 50.9
HPP92_022171 Vanilla planifolia HOM05D006562 ORTHO05D008230 3.0e-135 486.5 652 44.6
unitig_37.g12438 Utricularia gibba HOM05D006562 ORTHO05D008230 1.5e-134 484.2 626 45.2
Os03g0242100 Oryza sativa ssp. japonica HOM05D006562 ORTHO05D008230 5.2e-127 459.1 549 47.2
Zm00001eb398900 Zea mays HOM05D006562 ORTHO05D008230 3.6e-120 436.4 491 47.9
HPP92_022170 Vanilla planifolia HOM05D006562 ORTHO05D008230 1.5e-94 351.3 458 46.1
CDE02G3565 Ceratophyllum demersum HOM05D006562 ORTHO05D008230 1.8e-87 327.8 558 37.1
SMO329G0081 Selaginella moellendorffii HOM05D006562 ORTHO05D008230 2.6e-86 323.9 545 36.1
Pp3c8_14180 Physcomitrium patens HOM05D006562 ORTHO05D008230 1.6e-83 314.7 499 38.1
Mapoly0004s0213 Marchantia polymorpha HOM05D006562 ORTHO05D008230 4.8e-80 303.1 585 36.6
Dinv33664 Davidia involucrata HOM05D006562 ORTHO05D008230 7.9e-75 285.8 288 56.2
FAN26G2549 Fragaria x ananassa HOM05D006562 ORTHO05D008230 7.9e-59 232.6 215 56.3
SEGI_24182 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 1.5e-54 218.4 317 39.1
Hma1.2p1_0315F.1_g122300 Hydrangea macrophylla HOM05D006562 ORTHO05D008230 7.2e-52 209.5 198 60.6
MCO01G428 Micromonas commoda HOM05D006562 ORTHO05D008230 4.0e-42 177.2 623 27.0
PRCOL_00000425 Prasinoderma coloniale HOM05D006562 ORTHO05D008230 9.1e-31 139.4 511 28.0
Cre03.g196600 Chlamydomonas reinhardtii HOM05D006562 ORTHO05D008230 2.1e-27 128.3 619 24.7
Lsat_1_v5_gn_5_17820 Lactuca sativa HOM05D002511 ORTHO05D019442 5.7e-25 120.2 123 52.0
CBR_g51010 Chara braunii HOM05D006562 ORTHO05D008230 1.8e-23 115.2 373 28.7
Hund31353 Selenicereus undatus HOM05D006562 ORTHO05D008230 4.3e-20 104.0 104 53.8
Hund31354 Selenicereus undatus HOM05D006562 ORTHO05D008230 4.3e-20 104.0 104 53.8
Hund31048 Selenicereus undatus HOM05D006562 ORTHO05D008230 7.3e-20 103.2 104 53.8
Hund31049 Selenicereus undatus HOM05D006562 ORTHO05D008230 7.3e-20 103.2 104 53.8
SEGI_14672 Sequoiadendron giganteum HOM05D006562 ORTHO05D008230 1.9e-15 88.6 134 40.3
Sopen10g019740 Solanum pennellii HOM05D006562 ORTHO05D008230 7.0e-15 86.7 68 63.2
Actinidia17422 Actinidia chinensis HOM05D006562 ORTHO05D008230 8.3e-08 63.2 209 29.2
Carub.0002s2451 Capsella rubella HOM05D004094 ORTHO05D004601 3.2e-07 61.2 303 23.1
AL142U10030 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 6.0e-06 57.0 304 23.0
AL2G37830 Arabidopsis lyrata HOM05D004094 ORTHO05D004601 6.0e-06 57.0 304 23.0


User provided reference genes

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