Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G147000 Manihot esculenta HOM05D006469 ORTHO05D008034 4.8e-117 424.5 210 100.0
Manes.02G105600 Manihot esculenta HOM05D006469 ORTHO05D008034 1.6e-67 260.0 285 55.1
Potri.007G057000 Populus trichocarpa HOM05D006469 ORTHO05D008034 2.5e-57 226.1 282 49.3
Atru.chr3.815 Acer truncatum HOM05D006469 ORTHO05D008034 4.3e-57 225.3 281 48.4
Dinv33650 Davidia involucrata HOM05D006469 ORTHO05D008034 6.2e-56 221.5 291 48.5
GSVIVG01018765001 Vitis vinifera HOM05D006469 ORTHO05D008034 4.0e-55 218.8 203 57.1
Cfa006983 Carpinus fangiana HOM05D006469 ORTHO05D008034 6.9e-55 218.0 258 50.0
CANSAT25G3476 Cannabis sativa HOM05D006469 ORTHO05D008034 9.0e-55 217.6 204 57.4
TAR376G0066 Trochodendron aralioides HOM05D006469 ORTHO05D008034 4.4e-54 215.3 203 56.7
Lj4A220G94 Lonicera japonica HOM05D006469 ORTHO05D008034 7.6e-54 214.5 289 46.7
Gohir.A02G171200 Gossypium hirsutum HOM05D006469 ORTHO05D008034 9.9e-54 214.2 204 56.4
MD02G1130100 Malus domestica HOM05D006469 ORTHO05D008034 9.9e-54 214.2 279 45.5
Gohir.D03G008900 Gossypium hirsutum HOM05D006469 ORTHO05D008034 1.7e-53 213.4 170 62.9
Ciclev10026134m.g Citrus clementina HOM05D006469 ORTHO05D008034 3.8e-53 212.2 273 46.5
QL11p035074 Quercus lobata HOM05D006469 ORTHO05D008034 6.4e-53 211.5 188 59.0
Haze_03751 Corylus avellana HOM05D006469 ORTHO05D008034 1.9e-52 209.9 204 55.4
Gorai.003G009100 Gossypium raimondii HOM05D006469 ORTHO05D008034 1.9e-52 209.9 204 55.4
QL06p050760 Quercus lobata HOM05D006469 ORTHO05D008034 1.9e-52 209.9 293 45.1
QL06p050655 Quercus lobata HOM05D006469 ORTHO05D008034 1.6e-51 206.8 293 44.7
RcHm_v2.0_Chr2g0099281 Rosa chinensis HOM05D006469 ORTHO05D008034 1.6e-51 206.8 203 55.7
CANSAT25G3534 Cannabis sativa HOM05D006469 ORTHO05D008034 2.1e-51 206.5 196 56.6
Lalb_Chr05g0229831 Lupinus albus HOM05D006469 ORTHO05D008034 3.5e-51 205.7 289 43.3
Sp7g33770 Schrenkiella parvula HOM05D006469 ORTHO05D008034 4.6e-51 205.3 277 46.2
CiPaw.07G059900 Carya illinoinensis HOM05D006469 ORTHO05D008034 6.0e-51 204.9 203 55.2
Eucgr.I02338 Eucalyptus grandis HOM05D006469 ORTHO05D008034 7.8e-51 204.5 205 56.1
Hma1.2p1_0258F.1_g104040 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 1.0e-50 204.1 180 58.3
Thecc.01G016800 Theobroma cacao HOM05D006469 ORTHO05D008034 1.3e-50 203.8 288 44.4
Glyma.02G047300 Glycine max HOM05D006469 ORTHO05D008034 1.7e-50 203.4 205 53.2
Hma1.2p1_0258F.1_g104050 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 2.3e-50 203.0 204 54.4
AT4G35987 Arabidopsis thaliana HOM05D006469 ORTHO05D008034 3.0e-50 202.6 272 44.9
PSO170G4882 Papaver somniferum HOM05D006469 ORTHO05D008034 3.9e-50 202.2 170 58.2
TWI73G0981 Tripterygium wilfordii HOM05D006469 ORTHO05D008034 3.9e-50 202.2 216 53.2
FvH4_1g11701 Fragaria vesca HOM05D006469 ORTHO05D008034 5.1e-50 201.8 275 45.5
TPR.G24083 Trifolium pratense HOM05D006469 ORTHO05D008034 6.6e-50 201.4 204 52.5
A01p02720 Brassica napus HOM05D006469 ORTHO05D008034 8.7e-50 201.1 204 54.9
Medtr8g075480 Medicago truncatula HOM05D006469 ORTHO05D008034 8.7e-50 201.1 204 52.9
PSO700G0153 Papaver somniferum HOM05D006469 ORTHO05D008034 1.5e-49 200.3 170 57.1
Sc07g0001050 Simmondsia chinensis HOM05D006469 ORTHO05D008034 1.5e-49 200.3 170 58.8
CsaV3_6G047220 Cucumis sativus L. HOM05D006469 ORTHO05D008034 1.9e-49 199.9 285 42.8
Thhalv10025786m.g Eutrema salsugineum HOM05D006469 ORTHO05D008034 1.9e-49 199.9 274 45.3
Aqoxy5G01802 Aquilegia oxysepala HOM05D006469 ORTHO05D008034 3.3e-49 199.1 170 57.6
Psat4g100640 Pisum sativum HOM05D006469 ORTHO05D008034 3.3e-49 199.1 204 52.9
Actinidia22967 Actinidia chinensis HOM05D006469 ORTHO05D008034 5.6e-49 198.4 252 46.0
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 9.6e-49 197.6 279 44.8
HanXRQChr04g0119941 Helianthus annuus HOM05D006469 ORTHO05D008034 9.6e-49 197.6 203 52.7
Nn6g32040 Nelumbo nucifera HOM05D006469 ORTHO05D008034 9.6e-49 197.6 170 57.1
MELO3C007914.2 Cucumis melo HOM05D006469 ORTHO05D008034 1.6e-48 196.8 203 52.2
Sed0020941 Sechium edule HOM05D006469 ORTHO05D008034 1.6e-48 196.8 170 57.6
THA.LOC104807502 Tarenaya hassleriana HOM05D006469 ORTHO05D008034 1.6e-48 196.8 170 58.8
Aa31LG6G12960 Aethionema arabicum HOM05D006469 ORTHO05D008034 2.8e-48 196.1 269 45.0
C01p03020 Brassica napus HOM05D006469 ORTHO05D008034 2.8e-48 196.1 205 54.6
Ca_22385_v3 Cicer arietinum L. HOM05D006469 ORTHO05D008034 4.8e-48 195.3 169 58.0
Lsat_1_v5_gn_2_76041 Lactuca sativa HOM05D006469 ORTHO05D008034 4.8e-48 195.3 203 52.7
CARHR244380 Cardamine hirsuta HOM05D006469 ORTHO05D008034 6.2e-48 194.9 272 44.1
BolC1t00288H Brassica oleracea HOM05D006469 ORTHO05D008034 8.1e-48 194.5 281 44.8
SalBow5G1778 Salvia bowleyana HOM05D006469 ORTHO05D008034 8.1e-48 194.5 170 57.6
ECA238G1797 Erigeron canadensis HOM05D006469 ORTHO05D008034 1.1e-47 194.1 203 52.2
Phvul.003G263600 Phaseolus vulgaris HOM05D006469 ORTHO05D008034 1.4e-47 193.7 204 51.0
MSTRG.3610 Avicennia marina HOM05D006469 ORTHO05D008034 1.8e-47 193.4 170 57.6
BraA01t00258Z Brassica rapa HOM05D006469 ORTHO05D008034 3.1e-47 192.6 205 53.2
FAN26G2561 Fragaria x ananassa HOM05D006469 ORTHO05D008034 3.1e-47 192.6 203 52.7
Lj4g0017154 Lotus japonicus HOM05D006469 ORTHO05D008034 3.1e-47 192.6 204 51.0
Solyc03g033470.3 Solanum lycopersicum HOM05D006469 ORTHO05D008034 5.3e-47 191.8 171 54.4
Sopen03g006220 Solanum pennellii HOM05D006469 ORTHO05D008034 6.9e-47 191.4 171 54.4
Cc07_g10870 Coffea canephora HOM05D006469 ORTHO05D008034 9.0e-47 191.0 170 57.6
EL10Ac6g15486 Beta vulgaris HOM05D006469 ORTHO05D008034 1.2e-46 190.7 170 56.5
MBI05_g33508_MAGBIO Magnolia biondii HOM05D006469 ORTHO05D008034 1.2e-46 190.7 169 56.2
AUR62029479 Chenopodium quinoa HOM05D006469 ORTHO05D008034 3.4e-46 189.1 170 55.9
Oeu005141.2 Olea europaea HOM05D006469 ORTHO05D008034 3.4e-46 189.1 170 57.1
AUR62003357 Chenopodium quinoa HOM05D006469 ORTHO05D008034 4.5e-46 188.7 170 55.9
FAN19G1692 Fragaria x ananassa HOM05D006469 ORTHO05D008034 4.5e-46 188.7 278 43.9
CAN.G1817.1 Capsicum annuum HOM05D006469 ORTHO05D008034 5.8e-46 188.3 170 52.4
arahy.Tifrunner.gnm1.ann1.DLPQ3A Arachis hypogaea HOM05D006469 ORTHO05D008034 7.6e-46 188.0 205 51.7
arahy.Tifrunner.gnm1.ann1.S7P5W6 Arachis hypogaea HOM05D006469 ORTHO05D008034 7.6e-46 188.0 205 51.7
Migut.L00699 Erythranthe guttata HOM05D006469 ORTHO05D008034 7.6e-46 188.0 170 54.7
Migut.L00672 Erythranthe guttata HOM05D006469 ORTHO05D008034 9.9e-46 187.6 170 54.1
PGSC0003DMG402022530 Solanum tuberosum HOM05D006469 ORTHO05D008034 1.7e-45 186.8 171 52.0
PGR102G1692 Punica granatum HOM05D006469 ORTHO05D008034 8.4e-45 184.5 203 50.7
Zm00001eb398850 Zea mays HOM05D006469 ORTHO05D008034 3.2e-44 182.6 170 55.3
CSS0021178 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 4.2e-44 182.2 258 44.2
CSS0000310 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 9.3e-44 181.0 258 44.2
SGA_v2.0_scaffold45G17085 Striga asiatica HOM05D006469 ORTHO05D008034 1.6e-43 180.3 169 52.7
VMungo0251G1912 Vigna mungo HOM05D006469 ORTHO05D008034 1.3e-42 177.2 243 42.0
Os03g0243800 Oryza sativa ssp. japonica HOM05D006469 ORTHO05D008034 8.7e-42 174.5 170 52.9
DCAR_021507 Daucus carota HOM05D006469 ORTHO05D008034 1.8e-34 150.2 242 40.5
Duzib147G1015 Durio zibethinus HOM05D006469 ORTHO05D008034 3.3e-33 146.0 235 38.3
Pp3c16_25190 Physcomitrium patens HOM05D006469 ORTHO05D008034 4.3e-33 145.6 171 41.5
Carub.0007s0423 Capsella rubella HOM05D006469 ORTHO05D008034 9.6e-33 144.4 236 42.4
Nitab4.5_0003548g0050 Nicotiana tabacum HOM05D006469 ORTHO05D008034 2.4e-31 139.8 148 50.7
Sabra07G0048900 Salix brachista HOM05D006469 ORTHO05D008034 9.0e-31 137.9 222 40.5
Mapoly0087s0053 Marchantia polymorpha HOM05D006469 ORTHO05D008034 2.2e-29 133.3 172 39.5
Nitab4.5_0008011g0040 Nicotiana tabacum HOM05D006469 ORTHO05D008034 1.4e-28 130.6 158 46.2
Nitab4.5_0000438g0160 Nicotiana tabacum HOM05D006469 ORTHO05D008034 7.1e-28 128.3 97 59.8
Actinidia17434 Actinidia chinensis HOM05D006469 ORTHO05D008034 2.7e-27 126.3 155 47.7
Cpa.g.sc6.264 Carica papaya HOM05D006469 ORTHO05D008034 8.7e-26 121.3 92 63.0
SMO361G0665 Selaginella moellendorffii HOM05D006469 ORTHO05D008034 2.2e-24 116.7 168 36.3
Hund14051 Selenicereus undatus HOM05D006469 ORTHO05D008034 8.2e-24 114.8 242 33.9
BcaC04g20386 Brassica carinata HOM05D006469 ORTHO05D008034 5.3e-23 112.1 188 39.9
BcaC04g20390 Brassica carinata HOM05D006469 ORTHO05D008034 5.3e-23 112.1 188 39.9
Nitab4.5_0000864g0140 Nicotiana tabacum HOM05D006469 ORTHO05D008034 6.9e-23 111.7 165 40.6
FAN23G0491 Fragaria x ananassa HOM05D000153 ORTHO05D000118 5.5e-20 102.1 194 37.6
SEGI_12964 Sequoiadendron giganteum HOM05D006469 ORTHO05D008034 9.4e-20 101.3 113 43.4
C09p44210 Brassica napus HOM05D006469 ORTHO05D008034 2.1e-19 100.1 209 36.4
ClCG01G020380 Citrullus lanatus HOM05D000348 ORTHO05D000244 4.6e-19 99.0 83 60.2
Peaxi162Scf00328g00828 Petunia axillaris HOM05D006469 ORTHO05D008034 5.1e-18 95.5 134 44.0
CDE02G4028 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 8.8e-18 94.7 94 52.1
TAR376G1090 Trochodendron aralioides HOM05D006469 ORTHO05D008034 8.8e-18 94.7 77 59.7
BolC9t57293H Brassica oleracea HOM05D006469 ORTHO05D008034 1.1e-17 94.4 175 38.3
MD15G1244100 Malus domestica HOM05D006469 ORTHO05D008034 3.3e-17 92.8 86 52.3
Sabra07G0049000 Salix brachista HOM05D006469 ORTHO05D008034 2.2e-16 90.1 72 59.7
Prupe.7G169600 Prunus persica HOM05D006469 ORTHO05D008034 8.2e-16 88.2 148 44.6
CDE02G4243 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 1.1e-15 87.8 103 48.5
Cpa.g.sc6.265 Carica papaya HOM05D006469 ORTHO05D008034 6.9e-15 85.1 158 38.6
BcaC03g14989 Brassica carinata HOM05D006469 ORTHO05D008034 1.7e-13 80.5 121 46.3
unitig_46.g18721 Utricularia gibba HOM05D006469 ORTHO05D008034 5.0e-13 79.0 84 48.8
Ah.03g148920 Amaranthus hybridus HOM05D006469 ORTHO05D008034 3.2e-12 76.3 153 39.9
ATR0810G135 Amborella trichopoda HOM05D006469 ORTHO05D008034 5.7e-09 65.5 47 63.8
BolC2t08600H Brassica oleracea HOM05D006469 ORTHO05D008034 9.1e-07 58.2 102 40.2


User provided reference genes

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