Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 5.1e-180 634.4 348 100.0
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 6.1e-117 424.9 331 77.0
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 6.4e-106 388.3 375 67.5
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.2e-104 384.0 377 67.9
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 9.2e-97 357.8 363 61.7
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 1.6e-96 357.1 375 64.5
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 1.3e-95 354.0 365 63.6
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 3.3e-94 349.4 379 63.9
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 9.5e-94 347.8 381 59.1
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 3.1e-92 342.8 359 59.1
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 3.4e-91 339.3 371 63.3
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 2.1e-88 330.1 379 62.0
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 4.6e-88 328.9 367 59.1
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 6.0e-88 328.6 375 63.2
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 6.6e-87 325.1 370 61.1
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.9e-86 323.6 361 61.2
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.2e-85 320.9 362 61.9
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 2.8e-85 319.7 352 57.7
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 8.1e-85 318.2 367 57.8
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 8.1e-85 318.2 396 55.1
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 1.4e-84 317.4 367 60.2
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 1.8e-84 317.0 368 59.8
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 4.0e-84 315.8 372 58.9
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 2.6e-83 313.2 363 56.5
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 3.4e-83 312.8 385 60.0
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 4.4e-83 312.4 375 58.9
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 5.8e-83 312.0 382 57.3
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 5.8e-83 312.0 377 56.5
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.3e-82 310.8 377 55.7
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.3e-82 310.8 360 60.6
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.7e-82 310.5 356 57.3
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.2e-82 310.1 357 58.0
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 3.7e-82 309.3 364 55.8
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 3.7e-82 309.3 372 55.9
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 6.4e-82 308.5 382 55.0
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 6.4e-82 308.5 376 60.6
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 1.1e-81 307.8 357 55.2
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 1.9e-81 307.0 375 55.7
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.4e-81 306.6 371 58.2
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 4.1e-81 305.8 357 60.2
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 5.4e-81 305.4 362 56.4
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 9.2e-81 304.7 383 56.4
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 9.2e-81 304.7 361 58.4
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 1.2e-80 304.3 364 54.4
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.6e-80 303.9 355 59.7
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 2.1e-80 303.5 379 54.9
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 1.3e-79 300.8 358 57.0
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 1.3e-79 300.8 374 57.8
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 3.9e-79 299.3 376 55.9
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 1.5e-78 297.4 380 56.8
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 4.3e-78 295.8 375 57.6
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 2.1e-77 293.5 362 54.4
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 2.8e-77 293.1 389 56.8
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 3.6e-77 292.7 375 56.8
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 6.2e-77 292.0 380 56.3
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 2.4e-76 290.0 367 52.9
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 7.6e-75 285.0 363 53.4
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 9.9e-75 284.6 370 59.5
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.7e-74 283.9 384 52.9
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 2.2e-74 283.5 370 55.7
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 4.9e-74 282.3 378 56.6
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 1.2e-72 277.7 377 53.1
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 2.1e-72 276.9 365 58.1
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 4.6e-72 275.8 360 53.6
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.3e-71 273.5 368 54.1
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 3.0e-71 273.1 361 57.9
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.9e-70 270.4 360 56.9
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 2.5e-70 270.0 357 50.1
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 4.3e-70 269.2 377 52.0
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 4.3e-70 269.2 363 51.5
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 9.6e-70 268.1 449 46.1
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 2.1e-69 266.9 377 50.7
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 2.1e-69 266.9 380 52.6
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 3.6e-69 266.2 356 55.9
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 8.1e-69 265.0 351 55.6
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.3e-68 262.3 368 53.3
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.6e-67 260.0 368 53.3
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 3.4e-67 259.6 370 53.8
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 3.4e-67 259.6 367 55.6
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 5.8e-67 258.8 383 54.3
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 7.6e-67 258.5 356 49.4
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 7.6e-67 258.5 361 54.0
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.3e-66 257.7 362 54.1
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 1.7e-66 257.3 353 51.3
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 1.7e-66 257.3 356 50.8
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 3.8e-66 256.1 360 53.1
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.9e-65 253.8 365 53.4
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 3.2e-65 253.1 357 52.7
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 3.2e-65 253.1 378 53.7
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 7.1e-65 251.9 312 54.8
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 4.6e-64 249.2 244 61.9
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 1.0e-63 248.1 353 54.4
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 5.1e-63 245.7 330 55.8
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.1e-62 244.6 354 47.2
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 1.9e-62 243.8 353 52.7
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 3.3e-62 243.0 359 50.7
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.3e-62 243.0 436 44.0
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 4.3e-62 242.7 353 52.7
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 1.3e-61 241.1 365 47.9
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 1.6e-61 240.7 360 53.3
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 3.6e-61 239.6 357 49.3
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 3.6e-61 239.6 336 48.8
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 4.8e-61 239.2 360 50.8
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 6.2e-61 238.8 344 50.3
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 5.8e-59 232.3 334 55.4
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 7.6e-59 231.9 357 47.1
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 6.4e-58 228.8 437 43.0
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.9e-57 227.3 365 45.2
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 1.9e-57 227.3 358 49.2
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 2.4e-57 226.9 367 46.6
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 4.2e-57 226.1 365 47.1
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 2.1e-56 223.8 284 52.5
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.6e-56 222.6 444 42.3
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 7.9e-56 221.9 320 52.5
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 1.8e-55 220.7 332 46.7
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.8e-55 220.7 368 42.1
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.3e-55 220.3 320 51.9
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 3.7e-53 213.0 348 48.3
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 1.1e-52 211.5 181 70.2
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 1.8e-52 210.7 359 45.4
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 1.2e-51 208.0 358 46.9
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 2.9e-50 203.4 353 41.9
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 6.5e-50 202.2 352 42.3
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 8.4e-50 201.8 319 47.0
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 7.1e-49 198.7 360 39.7
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 2.1e-48 197.2 219 58.4
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 1.8e-47 194.1 332 41.3
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 3.9e-47 193.0 336 44.6
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 8.7e-47 191.8 355 48.7
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 1.5e-46 191.0 327 44.3
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 2.5e-46 190.3 368 44.6
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 5.7e-46 189.1 322 42.5
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 5.7e-46 189.1 367 40.6
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 1.4e-44 184.5 341 41.3
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 3.1e-44 183.3 327 44.6
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 3.2e-41 173.3 301 41.2
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.2e-40 171.4 340 40.3
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 3.9e-39 166.4 333 40.2
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 1.1e-38 164.9 328 43.9
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 2.5e-38 163.7 373 41.0
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 4.3e-38 162.9 207 52.2
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 8.2e-37 158.7 263 50.6
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 3.1e-36 156.8 382 35.1
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 4.1e-36 156.4 374 39.0
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 4.1e-36 156.4 380 36.8
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 3.4e-35 153.3 229 48.5
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 5.9e-35 152.5 365 35.6
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.3e-34 151.4 243 45.3
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 5.0e-34 149.4 217 49.8
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 2.5e-33 147.1 129 73.6
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 5.5e-33 146.0 373 34.9
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 7.2e-33 145.6 207 48.3
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 7.9e-32 142.1 227 45.8
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 1.0e-31 141.7 204 48.5
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 2.3e-31 140.6 325 39.4
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 8.8e-31 138.7 136 64.0
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 2.0e-30 137.5 216 47.2
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 2.0e-30 137.5 216 47.2
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 7.4e-30 135.6 209 45.5
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 7.4e-30 135.6 209 45.5
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 4.8e-29 132.9 222 48.6
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 3.4e-27 126.7 285 37.5
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 4.5e-27 126.3 204 48.5
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 8.5e-26 122.1 285 37.2
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 4.2e-25 119.8 328 38.1
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.3e-23 114.0 207 48.3
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 1.1e-17 95.1 244 34.8
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.5e-17 94.7 290 31.0
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 3.6e-16 90.1 321 34.0
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 3.6e-16 90.1 321 34.0
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 4.0e-15 86.7 345 35.1
Mapoly0004s0127 Marchantia polymorpha HOM05D003676 ORTHO05D030105 1.7e-13 81.3 428 28.0
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 9.1e-12 75.5 345 25.5
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.2e-11 75.1 56 73.2
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.7e-11 73.9 56 71.4
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 3.2e-09 67.0 73 47.9
TAR629G3197 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.1e-08 64.3 101 42.6
AagrBONN_evm.TU.Sc2ySwM_362.2718 Anthoceros agrestis HOM05D003676 ORTHO05D004262 8.0e-08 62.4 144 36.1
Nn8g38913 Nelumbo nucifera HOM05D003676 ORTHO05D004262 5.2e-07 59.7 53 58.5
PSO700G0244 Papaver somniferum HOM05D065651 ORTHO05D004262 5.2e-07 59.7 257 30.0
Atru.chr1.3639 Acer truncatum HOM05D003676 ORTHO05D004262 2.0e-06 57.8 56 58.9
PSO170G2947 Papaver somniferum HOM05D065651 ORTHO05D004262 2.0e-06 57.8 258 30.6
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.0e-06 57.8 45 71.1


User provided reference genes

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