Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 1.0e-97 360.1 192 100.0
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 7.9e-74 280.8 192 81.2
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 1.1e-51 207.2 195 62.6
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 9.4e-51 204.1 193 65.8
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 1.6e-50 203.4 195 66.2
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 4.7e-50 201.8 195 63.6
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 6.1e-50 201.4 194 64.4
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 6.1e-50 201.4 196 65.3
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 6.1e-50 201.4 192 66.1
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 3.0e-49 199.1 196 63.8
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 2.6e-48 196.1 193 64.2
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 3.3e-48 195.7 190 63.2
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 3.3e-48 195.7 190 63.2
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 5.7e-48 194.9 194 62.4
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 5.7e-48 194.9 195 62.6
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 5.7e-48 194.9 191 61.8
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 9.7e-48 194.1 192 62.5
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 9.7e-48 194.1 192 60.4
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 3.7e-47 192.2 192 63.5
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.8e-47 191.8 193 63.2
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 4.8e-47 191.8 195 62.1
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 4.8e-47 191.8 193 62.2
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 1.4e-46 190.3 192 62.5
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 1.8e-46 189.9 186 61.8
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 2.4e-46 189.5 191 60.2
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 3.1e-46 189.1 192 61.5
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 5.3e-46 188.3 193 62.2
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 5.3e-46 188.3 193 62.2
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 5.3e-46 188.3 193 62.7
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 7.0e-46 188.0 194 63.9
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.5e-45 186.8 193 62.2
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 2.0e-45 186.4 192 61.5
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 2.6e-45 186.0 192 61.5
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 3.4e-45 185.7 197 61.4
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 3.4e-45 185.7 199 57.8
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 5.9e-45 184.9 195 60.0
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 5.9e-45 184.9 192 59.9
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 7.7e-45 184.5 191 62.3
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 7.7e-45 184.5 197 61.4
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 1.3e-44 183.7 195 59.5
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 1.7e-44 183.3 192 59.9
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 2.2e-44 183.0 188 60.1
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 2.2e-44 183.0 195 60.5
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 2.9e-44 182.6 190 59.5
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 2.9e-44 182.6 192 60.9
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 3.8e-44 182.2 192 59.9
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 3.8e-44 182.2 193 61.1
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 5.0e-44 181.8 123 81.3
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 6.5e-44 181.4 194 59.3
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 8.5e-44 181.0 189 59.3
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 8.5e-44 181.0 190 59.5
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 8.5e-44 181.0 190 58.9
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 8.5e-44 181.0 190 58.9
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 1.1e-43 180.6 191 59.2
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 1.1e-43 180.6 193 59.6
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 1.4e-43 180.3 190 57.9
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 1.9e-43 179.9 192 60.4
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 2.5e-43 179.5 197 58.4
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 2.5e-43 179.5 195 59.5
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 3.2e-43 179.1 190 58.4
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 3.2e-43 179.1 190 58.4
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 3.2e-43 179.1 190 58.4
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 4.2e-43 178.7 195 57.9
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 5.5e-43 178.3 192 57.3
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 5.5e-43 178.3 195 59.0
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 9.4e-43 177.6 191 59.2
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 9.4e-43 177.6 192 58.9
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 9.4e-43 177.6 192 58.9
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 1.2e-42 177.2 192 60.4
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 1.6e-42 176.8 193 59.6
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 2.7e-42 176.0 191 57.6
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 3.6e-42 175.6 191 55.5
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 4.7e-42 175.3 191 57.6
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 6.1e-42 174.9 197 59.9
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 2.3e-41 172.9 191 57.6
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 2.3e-41 172.9 191 57.6
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 6.7e-41 171.4 191 57.1
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 6.7e-41 171.4 191 59.2
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 8.8e-41 171.0 191 58.6
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 2.6e-40 169.5 205 55.6
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 2.6e-40 169.5 185 60.0
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 5.7e-40 168.3 241 49.4
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 7.4e-40 167.9 196 55.1
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 1.3e-39 167.2 194 55.2
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 1.7e-39 166.8 191 55.5
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 1.1e-38 164.1 189 57.7
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 3.1e-38 162.5 194 55.7
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 4.1e-38 162.2 194 55.2
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 5.3e-38 161.8 190 56.3
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 1.2e-37 160.6 130 70.8
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 4.5e-37 158.7 189 54.5
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 5.9e-37 158.3 211 52.1
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 7.7e-37 157.9 145 63.4
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 1.0e-36 157.5 197 55.3
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 1.1e-35 154.1 186 54.3
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 1.5e-35 153.7 192 53.6
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 4.2e-35 152.1 139 63.3
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 1.2e-34 150.6 193 52.3
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 6.7e-33 144.8 203 52.2
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 1.3e-31 140.6 196 50.5
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 2.2e-31 139.8 192 51.0
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 2.8e-31 139.4 249 45.0
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 1.1e-30 137.5 137 59.9
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 7.0e-30 134.8 196 49.0
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 2.0e-29 133.3 191 48.2
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 3.5e-29 132.5 196 49.0
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 5.0e-28 128.6 126 64.3
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 6.5e-28 128.3 149 55.7
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 1.9e-27 126.7 96 74.0
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 4.7e-26 122.1 132 61.4
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 8.0e-26 121.3 136 55.9
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 1.0e-25 120.9 167 48.5
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 1.4e-25 120.6 124 60.5
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 3.0e-25 119.4 120 60.0
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 8.8e-25 117.9 94 73.4
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 7.5e-24 114.8 193 49.2
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 4.8e-23 112.1 136 49.3
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 2.4e-22 109.8 124 55.6
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 2.4e-22 109.8 133 51.9
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 2.7e-21 106.3 132 50.0
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.5e-21 105.5 169 43.8
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 3.8e-20 102.4 190 45.8
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 8.0e-18 94.7 96 61.5
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 6.3e-15 85.1 119 44.5
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 2.7e-13 79.7 67 59.7
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.3e-12 76.6 64 75.0
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 2.9e-12 76.3 126 47.6
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 8.6e-12 74.7 141 42.6
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 9.5e-11 71.2 113 44.2
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 9.5e-11 71.2 75 58.7
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 1.4e-09 67.4 74 56.8
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 1.4e-09 67.4 74 56.8
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 2.0e-08 63.5 79 44.3
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 8.3e-07 58.2 114 37.7
Zm00001eb093520 Zea mays HOM05D005654 ORTHO05D006438 1.1e-06 57.8 62 54.8
Mapoly0001s0539 Marchantia polymorpha HOM05D024399 ORTHO05D023494 4.1e-06 55.8 102 40.2
CARHR160590 Cardamine hirsuta HOM05D005654 ORTHO05D006438 5.4e-06 55.5 101 41.6


User provided reference genes

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