Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 1.1e-69 266.5 135 100.0
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 6.9e-32 141.0 135 64.4
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 3.5e-28 128.6 139 54.7
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 1.1e-24 117.1 137 50.4
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 9.9e-23 110.5 137 51.1
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 2.9e-22 109.0 138 49.3
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 4.9e-22 108.2 142 48.6
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 4.9e-22 108.2 142 48.6
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 4.2e-21 105.1 141 46.1
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.2e-20 103.6 136 47.8
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 2.7e-20 102.4 135 45.9
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 3.5e-20 102.1 138 47.1
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 3.5e-20 102.1 126 49.2
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 6.0e-20 101.3 139 49.6
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 1.0e-19 100.5 135 45.2
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 1.0e-19 100.5 136 46.3
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 1.3e-19 100.1 133 51.9
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 1.8e-19 99.8 135 48.1
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 3.0e-19 99.0 135 47.4
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 3.9e-19 98.6 136 49.3
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 5.1e-19 98.2 147 48.3
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 1.1e-18 97.1 135 51.1
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.9e-18 96.3 137 47.4
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 2.5e-18 95.9 138 47.8
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 3.3e-18 95.5 137 48.9
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 5.6e-18 94.7 135 45.2
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 7.4e-18 94.4 135 40.7
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 7.4e-18 94.4 138 44.9
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 7.4e-18 94.4 139 44.6
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 9.6e-18 94.0 136 44.1
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 2.1e-17 92.8 140 40.7
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 2.8e-17 92.4 136 50.0
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 4.8e-17 91.7 135 42.2
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 4.8e-17 91.7 130 43.8
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 6.2e-17 91.3 135 43.0
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 6.2e-17 91.3 135 44.4
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 8.1e-17 90.9 135 43.0
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 8.1e-17 90.9 135 42.2
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 8.1e-17 90.9 135 42.2
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 8.1e-17 90.9 135 43.0
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 8.1e-17 90.9 137 46.0
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.1e-16 90.5 135 41.5
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.4e-16 90.1 136 43.4
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 1.4e-16 90.1 145 44.1
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 1.8e-16 89.7 135 46.7
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 2.4e-16 89.4 135 42.2
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 3.1e-16 89.0 135 42.2
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 3.1e-16 89.0 135 42.2
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 3.1e-16 89.0 135 42.2
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 3.1e-16 89.0 130 44.6
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 3.1e-16 89.0 135 47.4
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 3.1e-16 89.0 133 43.6
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 3.1e-16 89.0 135 43.0
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 4.0e-16 88.6 135 40.0
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 4.0e-16 88.6 135 40.0
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 4.0e-16 88.6 135 43.0
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 4.0e-16 88.6 135 42.2
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 5.3e-16 88.2 135 41.5
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 5.3e-16 88.2 135 41.5
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 5.3e-16 88.2 133 45.9
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 6.9e-16 87.8 138 42.0
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-15 87.0 136 42.6
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 1.2e-15 87.0 136 41.9
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 1.5e-15 86.7 136 42.6
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 1.5e-15 86.7 136 42.6
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 1.5e-15 86.7 137 40.9
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.5e-15 86.7 136 42.6
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 2.0e-15 86.3 136 42.6
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 2.0e-15 86.3 136 42.6
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 2.0e-15 86.3 135 41.5
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 2.0e-15 86.3 130 43.1
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 2.6e-15 85.9 136 42.6
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 2.6e-15 85.9 136 42.6
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 2.6e-15 85.9 136 42.6
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 2.6e-15 85.9 136 42.6
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 2.6e-15 85.9 136 42.6
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 2.6e-15 85.9 130 41.5
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 2.6e-15 85.9 122 45.1
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.6e-15 85.9 138 44.2
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.4e-15 85.5 138 44.2
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 3.4e-15 85.5 132 43.9
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.5e-15 85.1 138 44.9
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 5.8e-15 84.7 136 41.2
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 5.8e-15 84.7 136 41.9
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 7.6e-15 84.3 133 42.1
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 7.6e-15 84.3 122 44.3
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 9.9e-15 84.0 136 41.9
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 9.9e-15 84.0 138 44.2
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 1.3e-14 83.6 138 44.2
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 1.3e-14 83.6 133 42.1
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.2e-14 82.8 138 42.8
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 3.8e-14 82.0 138 44.2
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 6.4e-14 81.3 133 40.6
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 8.4e-14 80.9 135 43.7
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 1.1e-13 80.5 137 44.5
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 1.1e-13 80.5 53 67.9
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.1e-13 80.5 143 41.3
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 1.4e-13 80.1 133 38.3
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 2.4e-13 79.3 139 45.3
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 4.2e-13 78.6 145 37.9
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 5.5e-13 78.2 137 40.9
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 5.5e-13 78.2 61 54.1
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 9.3e-13 77.4 122 39.3
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 1.2e-12 77.0 133 42.9
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.2e-12 77.0 143 38.5
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 2.1e-12 76.3 102 45.1
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 2.1e-12 76.3 138 37.7
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 2.7e-12 75.9 135 37.0
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 3.5e-12 75.5 142 38.7
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 4.6e-12 75.1 124 43.5
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 4.6e-12 75.1 124 39.5
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 6.0e-12 74.7 143 39.2
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 6.0e-12 74.7 135 41.5
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 1.3e-11 73.6 75 53.3
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 2.3e-11 72.8 52 61.5
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 3.0e-11 72.4 144 37.5
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 3.0e-11 72.4 141 38.3
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.0e-11 72.4 147 38.1
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 3.0e-11 72.4 124 40.3
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 6.7e-11 71.2 56 60.7
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 8.7e-11 70.9 143 37.1
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 8.7e-11 70.9 143 37.1
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 8.7e-11 70.9 143 37.1
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 8.7e-11 70.9 147 38.1
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.1e-10 70.5 145 35.2
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.1e-10 70.5 145 34.5
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 1.5e-10 70.1 131 39.7
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.5e-10 70.1 146 37.7
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.9e-10 69.7 124 39.5
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.9e-10 69.7 124 37.1
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.9e-10 69.7 131 37.4
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.5e-10 69.3 119 41.2
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 3.3e-10 68.9 127 37.0
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 4.3e-10 68.6 143 38.5
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 4.3e-10 68.6 119 41.2
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 5.6e-10 68.2 147 35.4
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 5.6e-10 68.2 124 39.5
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 5.6e-10 68.2 138 37.7
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 7.4e-10 67.8 144 35.4
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 7.4e-10 67.8 146 36.3
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 7.4e-10 67.8 144 35.4
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 7.4e-10 67.8 144 35.4
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 7.4e-10 67.8 146 36.3
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 7.4e-10 67.8 122 42.6
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 9.6e-10 67.4 148 35.8
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 1.3e-09 67.0 135 38.5
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 1.3e-09 67.0 135 40.0
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 1.6e-09 66.6 48 62.5
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.1e-09 66.2 141 36.9
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 3.7e-09 65.5 74 48.6
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 4.8e-09 65.1 128 34.4
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 4.8e-09 65.1 123 42.3
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 8.2e-09 64.3 47 57.4
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.1e-08 63.9 50 58.0
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.4e-08 63.5 63 49.2
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 1.8e-08 63.2 137 35.8
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 1.8e-08 63.2 137 35.8
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 1.8e-08 63.2 129 35.7
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 5.3e-08 61.6 142 33.8
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 5.3e-08 61.6 125 37.6
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 6.9e-08 61.2 142 33.8
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 1.5e-07 60.1 124 37.9
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 2.0e-07 59.7 148 31.8
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 2.0e-07 59.7 120 43.3
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.6e-07 59.3 59 45.8
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 4.5e-07 58.5 42 64.3
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 5.8e-07 58.2 124 40.3
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 7.6e-07 57.8 50 52.0
ATR0568G162 Amborella trichopoda HOM05D003805 ORTHO05D004300 1.0e-06 57.4 60 43.3
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 1.0e-06 57.4 37 62.2
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 1.0e-06 57.4 119 38.7
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 1.0e-06 57.4 60 51.7
ATR0568G115 Amborella trichopoda HOM05D003805 ORTHO05D004300 1.3e-06 57.0 52 46.2
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 1.3e-06 57.0 120 40.8
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 2.2e-06 56.2 121 35.5
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 3.8e-06 55.5 41 56.1


User provided reference genes

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