Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G135000 Manihot esculenta HOM05D006100 ORTHO05D007539 4.3e-59 231.1 115 100.0
Duzib147G1001 Durio zibethinus HOM05D006100 ORTHO05D007539 2.5e-22 109.0 112 60.7
COL.COLO4_22086 Corchorus olitorius HOM05D006100 ORTHO05D007539 5.5e-22 107.8 110 57.3
Thecc.01G036600 Theobroma cacao HOM05D006100 ORTHO05D007539 6.1e-21 104.4 111 59.5
THA.LOC104821276 Tarenaya hassleriana HOM05D006100 ORTHO05D007539 1.9e-19 99.4 94 61.7
Cfa004303 Carpinus fangiana HOM05D006100 ORTHO05D007539 2.5e-19 99.0 111 50.5
Haze_15098 Corylus avellana HOM05D006100 ORTHO05D007539 3.3e-19 98.6 110 50.9
Atru.chr3.567 Acer truncatum HOM05D006100 ORTHO05D007539 5.7e-19 97.8 112 55.4
FvH4_1g13390 Fragaria vesca HOM05D006100 ORTHO05D007539 5.7e-19 97.8 99 57.6
FAN19G3207 Fragaria x ananassa HOM05D006100 ORTHO05D007539 5.7e-19 97.8 99 57.6
TWI09G0021 Tripterygium wilfordii HOM05D006100 ORTHO05D007539 7.4e-19 97.4 110 53.6
FAN28G1903 Fragaria x ananassa HOM05D006100 ORTHO05D007539 9.7e-19 97.1 99 56.6
Ciclev10026748m.g Citrus clementina HOM05D006100 ORTHO05D007539 1.3e-18 96.7 116 54.3
RcHm_v2.0_Chr2g0101751 Rosa chinensis HOM05D006100 ORTHO05D007539 3.7e-18 95.1 111 50.5
Prupe.7G153900 Prunus persica HOM05D006100 ORTHO05D007539 6.3e-18 94.4 110 50.0
VMungo1215G0978 Vigna mungo HOM05D006100 ORTHO05D007539 4.1e-17 91.7 89 61.8
Dinv39980 Davidia involucrata HOM05D006100 ORTHO05D007539 3.4e-16 88.6 110 52.7
MD02G1148600 Malus domestica HOM05D006100 ORTHO05D007539 3.4e-16 88.6 110 50.9
Lj2g0016254 Lotus japonicus HOM05D006100 ORTHO05D007539 4.5e-16 88.2 111 52.3
MD15G1262900 Malus domestica HOM05D006100 ORTHO05D007539 4.5e-16 88.2 113 49.6
AT5G66780 Arabidopsis thaliana HOM05D006100 ORTHO05D007539 5.9e-16 87.8 95 56.8
TAR376G0804 Trochodendron aralioides HOM05D001794 ORTHO05D004177 5.9e-16 87.8 81 59.3
AL8G44670 Arabidopsis lyrata HOM05D006100 ORTHO05D007539 1.0e-15 87.0 108 50.0
Psat2g159960 Pisum sativum HOM05D006100 ORTHO05D007539 1.0e-15 87.0 84 58.3
Lalb_Chr09g0322441 Lupinus albus HOM05D006100 ORTHO05D007539 2.2e-15 85.9 83 56.6
Carub.0008s2773 Capsella rubella HOM05D006100 ORTHO05D007539 3.8e-15 85.1 88 59.1
Phvul.002G029900 Phaseolus vulgaris HOM05D006100 ORTHO05D007539 5.0e-15 84.7 91 54.9
FAN23G1739 Fragaria x ananassa HOM05D006100 ORTHO05D007539 8.5e-15 84.0 112 47.3
Lsat_1_v5_gn_4_148381 Lactuca sativa HOM05D006100 ORTHO05D007539 8.5e-15 84.0 101 48.5
arahy.Tifrunner.gnm1.ann1.L1JEHI Arachis hypogaea HOM05D006100 ORTHO05D007539 1.1e-14 83.6 117 47.9
QL06p045927 Quercus lobata HOM05D006100 ORTHO05D007539 1.1e-14 83.6 113 46.9
ECA232G0790 Erigeron canadensis HOM05D006100 ORTHO05D007539 1.4e-14 83.2 68 66.2
PSO675G2321 Papaver somniferum HOM05D006100 ORTHO05D007539 1.4e-14 83.2 118 49.2
BcaB07g29655 Brassica carinata HOM05D006100 ORTHO05D007539 1.9e-14 82.8 100 55.0
BcaC06g34744 Brassica carinata HOM05D006100 ORTHO05D007539 1.9e-14 82.8 73 63.0
C07p25000 Brassica napus HOM05D006100 ORTHO05D007539 1.9e-14 82.8 73 63.0
BolC7t43033H Brassica oleracea HOM05D006100 ORTHO05D007539 2.5e-14 82.4 73 63.0
Sed0016253 Sechium edule HOM05D006100 ORTHO05D007539 2.5e-14 82.4 86 52.3
FAN23G0264 Fragaria x ananassa HOM05D006100 ORTHO05D007539 4.2e-14 81.6 74 60.8
FAN26G0501 Fragaria x ananassa HOM05D006100 ORTHO05D007539 4.2e-14 81.6 106 44.3
TPR.G34229 Trifolium pratense HOM05D006100 ORTHO05D007539 5.5e-14 81.3 86 55.8
Medtr5g020060 Medicago truncatula HOM05D006100 ORTHO05D007539 7.2e-14 80.9 112 48.2
Sp2g29900 Schrenkiella parvula HOM05D006100 ORTHO05D007539 1.2e-13 80.1 95 50.5
CSS0029658 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 1.6e-13 79.7 104 47.1
Aqoxy6G01099 Aquilegia oxysepala HOM05D006100 ORTHO05D007539 2.1e-13 79.3 95 49.5
Gohir.A11G184500 Gossypium hirsutum HOM05D006100 ORTHO05D007539 2.1e-13 79.3 78 53.8
Nitab4.5_0000136g0440 Nicotiana tabacum HOM05D006100 ORTHO05D007539 2.1e-13 79.3 98 46.9
A07p17150 Brassica napus HOM05D006100 ORTHO05D007539 2.7e-13 79.0 92 53.3
BraA07t29442Z Brassica rapa HOM05D006100 ORTHO05D007539 2.7e-13 79.0 92 53.3
FvH4_1g13380 Fragaria vesca HOM05D006100 ORTHO05D007539 2.7e-13 79.0 112 44.6
arahy.Tifrunner.gnm1.ann1.IKK69W Arachis hypogaea HOM05D006100 ORTHO05D007539 3.6e-13 78.6 116 47.4
CiPaw.02G017200 Carya illinoinensis HOM05D006100 ORTHO05D007539 3.6e-13 78.6 70 64.3
FAN19G2702 Fragaria x ananassa HOM05D006100 ORTHO05D007539 3.6e-13 78.6 112 44.6
Gohir.A10G094900 Gossypium hirsutum HOM05D006100 ORTHO05D007539 3.6e-13 78.6 106 50.0
BcaB02g09991 Brassica carinata HOM05D006100 ORTHO05D007539 6.1e-13 77.8 92 51.1
RcHm_v2.0_Chr2g0101741 Rosa chinensis HOM05D006100 ORTHO05D007539 6.1e-13 77.8 118 45.8
Thhalv10005154m.g Eutrema salsugineum HOM05D006100 ORTHO05D007539 1.0e-12 77.0 95 50.5
HanXRQChr11g0324821 Helianthus annuus HOM05D006100 ORTHO05D007539 1.0e-12 77.0 97 50.5
Nitab4.5_0000434g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 1.4e-12 76.6 106 46.2
Duzib264G0645 Durio zibethinus HOM05D006100 ORTHO05D007539 1.8e-12 76.3 53 73.6
CiPaw.01G037400 Carya illinoinensis HOM05D006100 ORTHO05D007539 2.3e-12 75.9 110 45.5
BcaC03g18400 Brassica carinata HOM05D006100 ORTHO05D007539 3.9e-12 75.1 51 74.5
Nitab4.5_0003233g0010 Nicotiana tabacum HOM05D006100 ORTHO05D007539 3.9e-12 75.1 94 45.7
PSO541G1538 Papaver somniferum HOM05D006100 ORTHO05D007539 5.1e-12 74.7 90 46.7
Actinidia19182 Actinidia chinensis HOM05D006100 ORTHO05D007539 1.1e-11 73.6 107 43.9
Aa31LG1G15340 Aethionema arabicum HOM05D006100 ORTHO05D007539 1.1e-11 73.6 42 83.3
CARHR280920 Cardamine hirsuta HOM05D006100 ORTHO05D007539 1.1e-11 73.6 64 60.9
A02p44400 Brassica napus HOM05D006100 ORTHO05D007539 1.5e-11 73.2 88 55.7
C02p64790 Brassica napus HOM05D006100 ORTHO05D007539 1.5e-11 73.2 43 79.1
BolC2t12540H Brassica oleracea HOM05D006100 ORTHO05D007539 1.5e-11 73.2 43 79.1
BraA02t09357Z Brassica rapa HOM05D006100 ORTHO05D007539 1.5e-11 73.2 88 55.7
Glyma.11G067900 Glycine max HOM05D006100 ORTHO05D007539 2.0e-11 72.8 78 55.1
Nitab4.5_0001385g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 2.0e-11 72.8 106 46.2
Gohir.D10G093000 Gossypium hirsutum HOM05D006100 ORTHO05D007539 4.3e-11 71.6 91 53.8
Nn5g29589 Nelumbo nucifera HOM05D006100 ORTHO05D007539 4.3e-11 71.6 101 47.5
MD15G1262800 Malus domestica HOM05D006100 ORTHO05D007539 5.7e-11 71.2 58 62.1
Gorai.011G102200 Gossypium raimondii HOM05D006100 ORTHO05D007539 9.7e-11 70.5 91 53.8
PGR119G0418 Punica granatum HOM05D006100 ORTHO05D007539 9.7e-11 70.5 109 47.7
PGR102G3048 Punica granatum HOM05D006100 ORTHO05D007539 3.7e-10 68.6 87 48.3
Oeu009416.1 Olea europaea HOM05D006100 ORTHO05D007539 4.8e-10 68.2 112 45.5
MELO3C007824.2 Cucumis melo HOM05D006100 ORTHO05D007539 1.4e-09 66.6 96 38.5
EL10Ac6g15568 Beta vulgaris HOM05D006100 ORTHO05D007539 1.8e-09 66.2 95 46.3
CSS0018588 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 1.8e-09 66.2 101 43.6
Solyc02g062770.2 Solanum lycopersicum HOM05D006100 ORTHO05D007539 1.8e-09 66.2 75 49.3
Cpa.g.sc6.110 Carica papaya HOM05D006100 ORTHO05D007539 2.4e-09 65.9 86 51.2
ClCG01G019510 Citrullus lanatus HOM05D006100 ORTHO05D007539 2.4e-09 65.9 98 42.9
Oeu041448.1 Olea europaea HOM05D006100 ORTHO05D007539 3.1e-09 65.5 112 44.6
GSVIVG01018974001 Vitis vinifera HOM05D006100 ORTHO05D007539 3.1e-09 65.5 111 46.8
MSTRG.2759 Avicennia marina HOM05D006100 ORTHO05D007539 5.3e-09 64.7 115 44.3
CAN.G358.97 Capsicum annuum HOM05D006100 ORTHO05D007539 5.3e-09 64.7 106 38.7
Sopen02g013800 Solanum pennellii HOM05D006100 ORTHO05D007539 5.3e-09 64.7 75 49.3
CANSAT01G1084 Cannabis sativa HOM05D006100 ORTHO05D007539 1.2e-08 63.5 82 52.4
Rhsim08G0115500 Rhododendron simsii HOM05D006100 ORTHO05D007539 1.2e-08 63.5 112 43.8
DCAR_017276 Daucus carota HOM05D006100 ORTHO05D007539 1.5e-08 63.2 86 45.3
PGSC0003DMG400015478 Solanum tuberosum HOM05D006100 ORTHO05D007539 1.5e-08 63.2 73 49.3
Lsat_1_v5_gn_3_76280 Lactuca sativa HOM05D006100 ORTHO05D007539 2.0e-08 62.8 113 38.9
Migut.H00995 Erythranthe guttata HOM05D006100 ORTHO05D007539 4.5e-08 61.6 100 46.0
Peaxi162Scf00515g00519 Petunia axillaris HOM05D006100 ORTHO05D007539 4.5e-08 61.6 107 39.3
Solyc02g085330.1 Solanum lycopersicum HOM05D006100 ORTHO05D007539 4.5e-08 61.6 101 42.6
CsaV3_6G046200 Cucumis sativus L. HOM05D006100 ORTHO05D007539 7.7e-08 60.8 94 41.5
AUR62004046 Chenopodium quinoa HOM05D006100 ORTHO05D007539 1.3e-07 60.1 117 37.6
FAN28G0382 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.3e-07 60.1 41 65.9
vmacro17841 Vaccinium macrocarpon HOM05D006100 ORTHO05D007539 1.3e-07 60.1 113 38.1
Glyma.16G140500 Glycine max HOM05D006100 ORTHO05D007539 2.9e-07 58.9 98 46.9
MBI16_g38642_MAGBIO Magnolia biondii HOM05D006100 ORTHO05D007539 3.8e-07 58.5 39 74.4
Os03g0723400 Oryza sativa ssp. japonica HOM05D006100 ORTHO05D007539 3.8e-07 58.5 53 52.8
FAN26G1330 Fragaria x ananassa HOM05D006100 ORTHO05D007539 5.0e-07 58.2 43 65.1
MD02G1148700 Malus domestica HOM05D006100 ORTHO05D007539 5.0e-07 58.2 103 37.9
Sopen02g030020 Solanum pennellii HOM05D006100 ORTHO05D007539 1.1e-06 57.0 102 41.2
unitig_899.g14492 Utricularia gibba HOM05D006100 ORTHO05D007539 1.9e-06 56.2 88 46.6
CDE01G0731 Ceratophyllum demersum HOM05D006100 ORTHO05D007539 2.5e-06 55.8 66 53.0
Eucgr.I02450 Eucalyptus grandis HOM05D006100 ORTHO05D007539 4.2e-06 55.1 116 42.2
Peaxi162Scf00008g03716 Petunia axillaris HOM05D006100 ORTHO05D007539 4.2e-06 55.1 40 60.0
HanXRQChr16g0530351 Helianthus annuus HOM05D006100 ORTHO05D007539 5.5e-06 54.7 112 35.7
PGR044G2447 Punica granatum HOM05D006100 ORTHO05D007539 7.2e-06 54.3 47 61.7


User provided reference genes

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