Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 1.0e-69 266.5 130 100.0
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 4.3e-47 191.4 120 81.7
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.5e-44 183.0 112 82.1
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 4.4e-44 181.4 116 79.3
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.3e-43 179.9 114 78.9
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 4.9e-43 177.9 115 80.0
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 6.4e-43 177.6 112 79.5
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 6.4e-43 177.6 112 78.6
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 6.4e-43 177.6 112 81.2
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.1e-42 176.8 120 75.8
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 1.4e-42 176.4 110 80.9
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 2.4e-42 175.6 120 76.7
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 3.2e-42 175.3 116 78.4
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 3.2e-42 175.3 112 81.2
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 5.4e-42 174.5 112 79.5
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 9.2e-42 173.7 116 74.1
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.6e-41 172.9 115 75.7
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 2.7e-41 172.2 120 72.5
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 4.6e-41 171.4 112 75.9
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 4.6e-41 171.4 111 74.8
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 7.8e-41 170.6 117 71.8
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.0e-40 170.2 120 70.8
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 1.3e-40 169.9 115 76.5
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.3e-40 169.9 115 76.5
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.7e-40 169.5 112 75.9
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 3.0e-40 168.7 120 72.5
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.0e-40 168.7 115 75.7
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 3.9e-40 168.3 112 75.0
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 5.0e-40 167.9 113 74.3
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 8.6e-40 167.2 112 72.3
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.1e-39 166.8 112 74.1
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 1.5e-39 166.4 114 73.7
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.5e-39 166.4 120 71.7
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.5e-39 166.4 116 73.3
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.9e-39 166.0 111 73.9
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 1.9e-39 166.0 116 74.1
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 3.3e-39 165.2 113 72.6
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 3.3e-39 165.2 116 70.7
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 3.3e-39 165.2 115 74.8
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 4.3e-39 164.9 114 71.9
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 5.6e-39 164.5 116 74.1
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 5.6e-39 164.5 130 67.7
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 7.3e-39 164.1 117 71.8
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 7.3e-39 164.1 115 72.2
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 7.3e-39 164.1 113 71.7
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 9.5e-39 163.7 120 72.5
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 9.5e-39 163.7 120 72.5
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 9.5e-39 163.7 115 71.3
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 1.6e-38 162.9 115 72.2
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 2.1e-38 162.5 112 75.9
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.1e-38 162.5 107 76.6
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 2.1e-38 162.5 117 71.8
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.1e-38 162.5 107 77.6
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 2.8e-38 162.2 109 73.4
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 3.6e-38 161.8 118 68.6
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 4.7e-38 161.4 119 73.1
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 4.7e-38 161.4 115 69.6
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 4.7e-38 161.4 107 76.6
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 4.7e-38 161.4 109 73.4
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.1e-37 160.2 117 69.2
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.1e-37 160.2 115 68.7
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.1e-37 160.2 115 72.2
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.1e-37 160.2 115 71.3
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.1e-37 160.2 112 71.4
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.1e-37 160.2 109 71.6
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.1e-37 160.2 115 71.3
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.1e-37 160.2 117 70.1
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.4e-37 159.8 112 73.2
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.3e-37 159.1 112 69.6
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.3e-37 159.1 115 67.8
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 3.1e-37 158.7 118 66.1
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 3.1e-37 158.7 121 67.8
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 4.0e-37 158.3 109 73.4
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 5.2e-37 157.9 112 70.5
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 6.8e-37 157.5 114 69.3
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 6.8e-37 157.5 113 71.7
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 6.8e-37 157.5 108 69.4
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 8.9e-37 157.1 120 70.0
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 1.5e-36 156.4 113 69.9
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 1.5e-36 156.4 112 72.3
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.5e-36 156.4 117 66.7
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.5e-36 156.4 107 75.7
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 2.6e-36 155.6 112 70.5
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 3.4e-36 155.2 116 69.0
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 4.4e-36 154.8 115 71.3
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 7.5e-36 154.1 114 70.2
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 7.5e-36 154.1 115 68.7
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.3e-35 153.3 112 68.8
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 1.3e-35 153.3 113 67.3
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 2.2e-35 152.5 111 67.6
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 2.2e-35 152.5 111 70.3
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 2.9e-35 152.1 115 67.0
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 4.9e-35 151.4 112 69.6
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.9e-34 149.4 111 70.3
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 7.0e-34 147.5 112 67.9
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 9.2e-34 147.1 116 64.7
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 1.2e-33 146.7 166 50.6
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.2e-33 146.7 111 67.6
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 1.6e-33 146.4 110 70.0
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.6e-33 146.4 110 70.0
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 1.6e-33 146.4 112 67.9
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 1.6e-33 146.4 113 66.4
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 2.1e-33 146.0 112 67.0
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 2.7e-33 145.6 110 69.1
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.7e-33 145.6 112 67.9
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.5e-33 145.2 112 67.0
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 1.0e-32 143.7 109 68.8
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.0e-32 143.7 109 68.8
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 1.3e-32 143.3 117 63.2
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 2.3e-32 142.5 109 68.8
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 3.0e-32 142.1 107 70.1
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 3.9e-32 141.7 119 63.0
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 5.1e-32 141.4 108 66.7
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 5.1e-32 141.4 110 67.3
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 1.1e-31 140.2 107 69.2
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.1e-31 140.2 107 69.2
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.1e-31 140.2 109 69.7
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.5e-31 139.8 107 68.2
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 1.5e-31 139.8 99 72.7
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 1.5e-31 139.8 94 75.5
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.5e-31 139.8 106 68.9
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 2.5e-31 139.0 110 66.4
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 7.3e-31 137.5 112 63.4
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 9.5e-31 137.1 109 64.2
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.2e-30 136.7 94 71.3
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.6e-30 136.3 156 51.3
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.8e-30 135.6 93 75.3
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 3.6e-30 135.2 112 63.4
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 6.2e-30 134.4 106 67.0
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.3e-29 132.5 93 73.1
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 5.2e-29 131.3 94 68.1
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 7.5e-28 127.5 93 72.0
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 1.9e-26 122.9 94 67.0
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 4.1e-26 121.7 94 66.0
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.2e-25 120.2 94 66.0
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 6.0e-25 117.9 116 51.7
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.3e-24 116.7 105 55.2
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 3.0e-24 115.5 105 56.2
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 1.1e-23 113.6 89 64.0
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 2.5e-23 112.5 112 60.7
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.5e-20 103.2 72 69.4
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 7.6e-20 100.9 71 70.4
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 9.9e-12 73.9 49 83.7
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.9e-10 69.7 49 79.6
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 5.4e-10 68.2 49 75.5
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 4.6e-09 65.1 107 43.0
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 6.0e-09 64.7 137 35.0
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 6.0e-09 64.7 51 64.7
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.7e-08 63.2 39 84.6
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 2.1e-06 56.2 134 32.8


User provided reference genes

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