Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 1.8e-107 392.5 183 100.0
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 2.5e-61 239.2 142 79.6
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 7.3e-61 237.7 142 78.9
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.1e-60 236.1 142 78.2
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 2.1e-60 236.1 142 78.2
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 8.1e-60 234.2 142 78.2
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.1e-59 233.8 142 78.2
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 2.3e-59 232.6 142 78.2
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 3.1e-59 232.3 142 76.8
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 4.4e-58 228.4 143 76.9
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 5.8e-58 228.0 141 78.0
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 7.5e-58 227.6 143 75.5
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.3e-57 226.9 142 74.6
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 1.7e-57 226.5 143 76.2
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.7e-57 226.5 141 75.9
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 2.2e-57 226.1 144 77.8
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 6.4e-57 224.6 141 72.3
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 6.4e-57 224.6 143 74.8
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.4e-56 223.4 143 74.8
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.4e-56 223.4 143 74.1
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 1.9e-56 223.0 143 73.4
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 4.1e-56 221.9 147 73.5
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 5.4e-56 221.5 143 74.1
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 5.4e-56 221.5 143 74.1
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.6e-55 219.9 142 76.1
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 4.6e-55 218.4 143 73.4
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.7e-54 216.5 144 73.6
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 2.3e-54 216.1 144 71.5
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 3.0e-54 215.7 142 73.9
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 3.9e-54 215.3 143 73.4
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 3.9e-54 215.3 142 73.2
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 3.9e-54 215.3 143 72.7
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.1e-53 213.8 148 71.6
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.1e-53 213.8 142 71.1
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 1.9e-53 213.0 147 70.1
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 2.5e-53 212.6 147 70.1
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 2.5e-53 212.6 147 70.1
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 3.3e-53 212.2 144 72.9
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 5.6e-53 211.5 143 72.0
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 9.5e-53 210.7 138 71.7
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 9.5e-53 210.7 138 72.5
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.1e-52 209.5 149 69.8
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.1e-52 209.5 148 70.3
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 2.1e-52 209.5 145 69.7
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 6.2e-52 208.0 147 71.4
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 8.1e-52 207.6 119 82.4
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 8.1e-52 207.6 175 60.0
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.4e-51 206.8 155 68.4
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.8e-51 206.5 145 69.0
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 2.4e-51 206.1 147 70.1
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 4.0e-51 205.3 155 66.5
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 8.9e-51 204.1 138 73.9
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 8.9e-51 204.1 145 69.0
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.2e-50 203.8 144 69.4
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 2.6e-50 202.6 144 71.5
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 5.8e-50 201.4 126 78.6
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 5.8e-50 201.4 151 64.2
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 7.6e-50 201.1 138 71.7
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.3e-49 200.3 149 67.8
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.2e-49 199.5 144 69.4
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 2.9e-49 199.1 145 70.3
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 4.9e-49 198.4 147 65.3
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 3.2e-48 195.7 125 77.6
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 7.1e-48 194.5 146 68.5
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 2.1e-47 193.0 142 69.0
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 2.7e-47 192.6 145 66.9
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 4.6e-47 191.8 150 67.3
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 6.0e-47 191.4 156 62.8
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 7.8e-47 191.0 147 66.7
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 7.8e-47 191.0 126 73.8
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.0e-46 190.7 137 65.7
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.3e-46 190.3 122 74.6
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.7e-46 189.9 143 66.4
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.3e-46 189.5 147 66.7
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 3.0e-46 189.1 124 73.4
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 3.0e-46 189.1 119 76.5
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 5.1e-46 188.3 125 72.8
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 8.7e-46 187.6 147 65.3
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.9e-45 186.4 143 67.1
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 2.5e-45 186.0 173 57.8
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 3.3e-45 185.7 145 65.5
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 4.3e-45 185.3 123 69.9
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 5.6e-45 184.9 136 67.6
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 7.3e-45 184.5 145 64.8
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 9.6e-45 184.1 119 73.9
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 9.6e-45 184.1 143 65.7
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 1.2e-44 183.7 122 73.0
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.6e-44 183.3 143 65.7
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 2.1e-44 183.0 119 67.2
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.1e-44 183.0 122 72.1
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 3.6e-44 182.2 120 74.2
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 3.6e-44 182.2 119 75.6
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 3.6e-44 182.2 143 65.7
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 3.6e-44 182.2 144 66.0
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 4.7e-44 181.8 119 67.2
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 6.2e-44 181.4 119 68.9
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 6.2e-44 181.4 119 67.2
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 6.2e-44 181.4 121 71.1
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 6.2e-44 181.4 143 63.6
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 8.1e-44 181.0 121 72.7
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 8.1e-44 181.0 124 70.2
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 8.1e-44 181.0 131 70.2
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 1.1e-43 180.6 119 66.4
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.1e-43 180.6 119 68.9
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 1.1e-43 180.6 147 63.9
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.8e-43 179.9 122 71.3
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 2.4e-43 179.5 119 68.1
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 3.1e-43 179.1 121 69.4
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 4.0e-43 178.7 143 61.5
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 5.2e-43 178.3 119 66.4
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 6.9e-43 177.9 120 70.8
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 1.2e-42 177.2 120 66.7
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 1.2e-42 177.2 120 66.7
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 1.5e-42 176.8 124 66.9
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 2.6e-42 176.0 120 65.8
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 2.6e-42 176.0 120 65.8
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 2.6e-42 176.0 121 69.4
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 2.6e-42 176.0 124 69.4
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 7.6e-42 174.5 120 65.0
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 7.6e-42 174.5 136 65.4
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 7.6e-42 174.5 124 68.5
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 7.6e-42 174.5 134 62.7
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.9e-41 172.6 123 68.3
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 2.9e-41 172.6 142 61.3
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 3.8e-41 172.2 120 64.2
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 3.8e-41 172.2 119 65.5
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 4.9e-41 171.8 103 81.6
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 6.4e-41 171.4 135 64.4
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 3.5e-39 165.6 121 67.8
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 6.0e-39 164.9 142 58.5
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 1.0e-38 164.1 125 65.6
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 5.1e-38 161.8 198 48.0
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 5.1e-38 161.8 105 76.2
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 5.6e-37 158.3 135 62.2
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 9.6e-37 157.5 122 62.3
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.3e-36 157.1 150 56.7
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 9.0e-35 151.0 118 63.6
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.5e-29 132.9 159 45.3
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.1e-27 127.5 136 48.5
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 7.6e-26 121.3 140 51.4
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 1.1e-24 117.5 61 93.4
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 3.9e-22 109.0 61 85.2
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 8.7e-22 107.8 184 38.0
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 1.0e-17 94.4 149 35.6
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 3.8e-17 92.4 92 50.0
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 1.2e-15 87.4 91 50.5
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 2.5e-13 79.7 52 73.1
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 9.0e-11 71.2 77 49.4
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 2.3e-06 56.6 55 56.4
VMungo1383G0961 Vigna mungo HOM05D001558 ORTHO05D005808 3.9e-06 55.8 39 61.5
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 8.8e-06 54.7 95 35.8


User provided reference genes

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