Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1518.1 852 100.0
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1335.9 853 87.5
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1282.7 861 81.0
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1262.7 845 81.2
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1253.8 855 79.3
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1236.5 790 82.3
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1221.8 845 81.3
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1218.0 850 79.4
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1212.6 842 78.5
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1209.5 843 78.5
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1208.4 850 80.2
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1206.4 850 80.6
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1204.9 855 77.4
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1203.0 863 76.6
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1202.6 848 76.1
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1198.0 838 76.8
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1197.6 837 76.6
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1197.6 837 76.6
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1197.6 850 80.4
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1195.6 855 78.1
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1193.7 837 76.3
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1190.3 848 74.3
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1188.7 851 75.4
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1187.2 848 73.9
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1186.8 837 75.9
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1186.4 833 76.8
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1185.6 837 75.7
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1181.4 856 76.9
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1180.2 835 76.4
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1179.9 851 75.1
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1177.2 848 77.4
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1170.2 799 78.6
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1169.5 797 79.7
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1166.4 842 73.6
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 0.0e+00 1162.9 850 78.1
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1160.2 794 78.2
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1156.7 848 73.3
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1154.4 852 73.8
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1152.9 849 74.1
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1152.9 849 73.5
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1146.7 849 73.6
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 0.0e+00 1145.6 854 73.1
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 0.0e+00 1145.6 850 75.2
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1142.1 767 77.7
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1140.6 828 74.2
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1140.2 847 73.8
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1139.8 757 80.4
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1139.8 847 73.4
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1139.4 845 72.1
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1137.9 758 80.1
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1137.5 846 73.3
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1136.3 865 72.8
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 0.0e+00 1135.9 798 75.9
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 0.0e+00 1135.9 832 76.4
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 0.0e+00 1135.6 830 75.3
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 0.0e+00 1135.2 849 74.2
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1134.0 854 72.8
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1130.5 827 73.6
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1127.1 828 73.3
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1126.7 820 74.8
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1125.2 820 75.0
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1124.0 820 74.9
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1122.8 827 73.2
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1122.1 849 73.3
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 0.0e+00 1118.2 832 75.4
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 0.0e+00 1114.0 835 74.0
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1114.0 787 75.0
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1112.4 841 72.3
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 0.0e+00 1110.5 960 66.1
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1110.5 787 74.7
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1105.5 843 73.3
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1104.4 837 69.3
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 0.0e+00 1103.6 887 71.4
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 0.0e+00 1100.9 837 72.0
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1099.7 792 73.4
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 0.0e+00 1099.0 840 72.9
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1098.6 843 74.3
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1095.5 800 71.6
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1094.0 792 73.0
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 0.0e+00 1094.0 841 69.0
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 0.0e+00 1089.7 851 73.0
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 0.0e+00 1088.6 794 73.0
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1085.5 758 75.2
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 0.0e+00 1085.5 838 70.2
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1081.6 850 69.4
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 0.0e+00 1079.7 842 72.2
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 5.8e-312 1074.7 894 67.3
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 2.6e-310 1068.5 733 75.3
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 1.9e-305 1052.4 841 68.3
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 9.5e-305 1050.0 837 67.4
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 5.2e-303 1044.3 834 67.3
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 1.7e-301 1039.3 675 77.8
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 8.3e-301 1036.9 799 68.7
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 1.1e-297 1026.5 837 68.7
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 2.8e-296 1021.9 906 64.2
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 7.6e-294 1013.8 671 76.3
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 4.4e-286 988.0 652 77.3
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 9.9e-286 986.9 760 72.0
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 2.7e-283 978.8 652 76.5
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 4.6e-283 978.0 842 62.0
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 3.3e-281 971.8 836 62.4
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 5.3e-279 964.5 760 68.3
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 9.9e-278 960.3 856 64.3
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 3.8e-277 958.4 626 77.3
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 4.6e-275 951.4 638 77.9
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 2.3e-266 922.5 791 65.2
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 2.6e-262 909.1 790 59.0
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 5.1e-258 894.8 569 79.4
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 9.3e-252 874.0 851 54.6
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 1.4e-247 860.1 853 53.9
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 2.5e-241 839.3 790 54.7
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 8.5e-229 797.7 789 60.2
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 1.7e-224 783.5 788 52.5
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.4e-218 763.8 862 55.3
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 2.6e-201 706.4 429 83.9
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 3.0e-165 586.6 482 66.8
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.9e-156 557.4 441 68.5
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 1.3e-147 528.1 322 84.2
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 3.8e-128 463.4 772 37.0
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 2.6e-124 450.7 381 75.1
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 1.7e-123 448.0 312 71.5
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 9.1e-122 442.2 789 34.6
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 2.6e-121 440.7 269 82.5
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 1.7e-107 394.8 394 56.1
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 1.7e-99 368.2 854 31.0
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 3.3e-79 300.8 280 60.4
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.4e-76 290.8 306 56.2
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 1.1e-63 249.2 289 52.9
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 2.2e-51 208.4 180 62.2
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 6.4e-51 206.8 132 78.0
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 6.4e-43 180.3 126 73.0
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 8.4e-43 179.9 142 73.2
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.8e-35 154.5 157 55.4
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 4.9e-35 154.1 157 55.4
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.2e-34 151.4 158 57.6
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 2.3e-32 145.2 121 66.9
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 4.2e-18 97.8 75 72.0
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 1.4e-08 66.2 60 55.0


User provided reference genes

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